Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Xanthobacter autotrophicus Py2

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
6121	GCGCGCA-GCGCGCA-GCACGCA-GCACGCA	Design primers
16040	AGGGGGCGTTC-CGGGGGCGTTC-CGGGGGCGTGC	Design primers
58150	GCGCCCGGCCGCGGCCGGGCGAGCCCAGCC	Design primers
162443	GCGCTGGTGCTGGCGCTTGCGCTG	Design primers
189627	CCAGAA-CCAGAA-CCCGAA-CCAGAA-CGAGAA	Design primers
213912	CGCCTCGCTCACCGGCTTCTCGCTCACCGGTCCTTCGCTCACCGG	Design primers
329179	CAC-CAC-CAG-CAC-CAC-CAG-CAG-CAC	Design primers
352689	GGCGGCGACGGCGGCGACGGCGTC	Design primers
362078	AGCAGGGCTATTACGGGCCGGGCTATTACGGCCAGGTCTATTACG	Design primers
379625	GCTTCAGAAGAAGCCGGGCTCAGAAGAAGCCAGGCTCAGAAGAACCCG	Design primers
383288	GGAGCCCGCGATTTTGGTGCTCGCGATCTTGGAACTCGCGATCTTGGAACACGTGATTTTGGAGCCGGTGATGTTGGGGCCCGCGATCTT	Design primers
388440	GCTGGTGGTGGTGCAGGTGCTGATGCTGGT	Design primers
408478	CTGTCCTGAAGCGTGTCCTGAACCGTGTCCTGGAGC	Design primers
409798	GGTGGCGGCGGCGGTGGCGCTGGCGCTGGC	Design primers
438926	GCGGCCGGGCATTGTGCTGCGGCCTCGCATTATGCTGCGGCCGGGCATTGTGCT	Design primers
466721	CAG-CAG-CAG-CAC-CAT-CAG-CAT-CAG	Design primers
490040	CAGGTGCCGGTGCCGGTGCAGGGG	Design primers
509089	GTGCCGGTGCTGGTGCCGGTGCAG	Design primers
529663	GGCCCCCGCCGCCCCCCGCCGCCCCCGGCC	Design primers
537197	CGCTGGTGCTGGCCCTGGTGCTGG	Design primers
550409	GGCCGGTGAGGCCCGTGAGGCCGATGA	Design primers
550996	AGCCGCGCT-GGCCGCGCT-GGCCGCGCT	Design primers
563798	CCGGTG-CCGGAG-CCGGAG-CCGGGG	Design primers
564784	GCCATC-GCCATC-GCCACC-GCCAAC	Design primers
657690	TCAAGGGCAAGGACAAGGTGAAGG	Design primers
683326	GGAGAG-GGAGAG-GGAGTG-GGAGTG-GGAGAA	Design primers
715633	GGTGGCCTCCTGTAC-CGTGGCCTCCTGTAC-CGTGGCCTCCTGCGC-CGTGGCCTCCTGCGC	Design primers
739101	CGGCGGAGGCGGCGGCGAGGGCGG	Design primers
752612	TCTTGAAGAAAGTTCTTGGAGAAAGTTCTTGGAGCAAGT	Design primers
849409	GAAGATAAAGATGAAGATGAAGAA	Design primers
931141	CATCGCCAACGCCCTCGCCATCGG	Design primers
939666	AGACCGAGTATCTGGACCGAGTACCTGGACCGAGTACCT	Design primers
951441	CAAGAAGAAGGACGACGACAAGAAGAACGACCAGAAGAAGGACAA	Design primers
953798	GGGCGGGGCCGGGGGCTGGGACGG	Design primers
994837	CCAGCACCGGCACCAGCACCATCA	Design primers
997952	GCGCCGCTCCGTGCCGAGCCGCGCG	Design primers
1061444	GGGGGGCAAGACCTC-GGGGAATAAGACCTC-GGGGAATAAGACCTC-GGGGAATAAGACCTC-GGGGAATAAGACCTC	Design primers
1181467	GATGACGATGCCGATGGCGATGGC	Design primers
1222928	CCCGGCCCGCTCCGGCCGGGTCCGG	Design primers
1261944	CTCAGGT-CACAGGT-CACAGGT-CACAGGT-CACAGGT	Design primers
1317197	GGGGCGGGCGAGGCGGGCGGGGCGGGG	Design primers
1324905	GGCTTCGGCCTCGTCTTCGGCATC	Design primers
1328054	AGCAGGAGAGCGGCAAGCACGCGAGCGGCAAGCAAGACGGCGGCA	Design primers
1333825	AAGCTGTCGGATGCCAAGCCGTCCGACGCCAAGCCGTCCGACGCC	Design primers
1338074	GCTTCGGCTTCCGCTGCGGCTTCC	Design primers
1342919	GGCGGCATGGGTGGCATGGGCGGCATG	Design primers
1347841	CCGCCGCAAGAGCCACGGCAAGAGCCGCAGCGAGAG	Design primers
1390924	CGAAGACGAAGGCGAGGACGAAGG	Design primers
1435079	CGGCGCGGCCCTGCGCTGCGCGCCG	Design primers
1455920	GCCGCCACCGCCACCGCCGTCGCC	Design primers
1545987	TTGGAGTCTTGGAC-TTGGAGTCTCAGAC-TTGGAGTCTCAGAC-TTGGAGTCTCAGAC	Design primers
1561988	GTGTTCCGCCCAAACAAGTTCCGCCCAAGCAGGTTCCGCCCAAAT	Design primers
1593047	ATCGTGCTGTTCGTGCTGATCGTGCGG	Design primers
1631794	CGCGC-CGCGG-AGCGC-CGCGC-CGCGC	Design primers
1658241	CTCAGCAAGGTGAAGCTCGGCAAGGTGAAGCTTGGCGAGGTGAAG	Design primers
1726413	CCCCCGTCAAATGCATTCTCGTCAAATGCACTCCCGTCAAACGCG	Design primers
1849414	CGGCCAAGGGTGACGCCAAGGGTGGCGCCAAGGGTG	Design primers
1849468	AAGCTCCCGCCAAGGTTCCCGCCAAGGTTCCCGCCAAGGCTCCGGCCA	Design primers
1852308	CGGCAGGCGTCACCGGAGCAGGTGTCACCGGGGCAGGCGTCACCG	Design primers
1875942	CGCCCT-CGCCCT-CGCCTT-CGCCCT	Design primers
1931519	CTTGGGCGCTTCCTTGGACGCTTCCATGGGCGTTTC	Design primers
1942065	GCCGCCGCCGCCACCGCCGCCGGC	Design primers
1991077	AGGCTT-GGGCTT-CGGCTT-CGGCTT	Design primers
1998861	GTGTTCGCCCGTCTCCTGCGCGCCCGTCTCCTGCGCGCCCGTCTC	Design primers
2071248	CGCGCCGCGGGGCGCCGCGTCGCGC	Design primers
2129984	TACGCCCAGCAGGGCTACGGGCAGCAAGGCTATCCCCAGCAGGGC	Design primers
2179014	CGAAGC-CCAAGC-CCAAGC-CGAAGC	Design primers
2239855	GCGGGAACGGGCGCGGGAGCAGGCGCGAGCACGGGC	Design primers
2242023	ATGACCCAGGCCCAGGTGAACCAGGCCGAGATGAACCAGGCCGAA	Design primers
2263750	GCCGGCGCTGGCGCCGGTGCCGGC	Design primers
2270949	GCCCGTGCCCGCGCCCATGCCCGG	Design primers
2274358	GACGGACCTGAATACGGACCTTAATACGGACCCGAA	Design primers
2321685	GGC-GGC-GGG-GGC-GGC-GGA-GGA-GGC	Design primers
2329004	CGCCGCCCCCGCCACCGCCGCAGC	Design primers
2382016	CGAGCCGACCCGCGCCGAGCTGAGC	Design primers
2390762	CGAGGGCCAGGGCGAGGCCGAGGT	Design primers
2427942	TGGCGCGCGGCGGCGCTCGGCGCCGCGCGG	Design primers
2428518	CCG-CCG-CCG-CCT-CCA-CCG-CCG-CCG	Design primers
2430008	CTTCGGGGCATCCGCCTTCGGCGCGTCGGCCTTGGGGGCTTCCGC	Design primers
2461623	GGGCTTGGGCCTCGGCTTCGGCTT	Design primers
2481700	GGTTGGCAAGGCACT-CGTGGTCAAGGCACT-CGTGGTCAAGGCACT-CGTGGTCAAGGCACT	Design primers
2485212	ATCGGCACCGGCCTCGGCATCGCC	Design primers
2491082	CTTGGTCGCACCGGACTTGGTCGTAGCAGACTTGGCCACACCGGA	Design primers
2565017	GGCGCGGGCGTGGGTGCGGACGCG	Design primers
2572919	GCGGACCGCGTCGGG-GCTGCCCTCGTCGGG-GCTGCCCTCGTCGGG-GCTGCCCTCGTCGGG-GCTGCCCTCGTCGGG-GCTGCCCTCGTCGGG	Design primers
2589064	ACGGAAGCCGCCGCCGAAGCCGCCCCGGAAGCCTCC	Design primers
2649608	CGCCCACGGCCACGTCCACGCCCG	Design primers
2693152	CCGGTCCGGGCCGATCGGGTCCGGC	Design primers
2693248	CGCCGG-CGCCGG-CGCTGG-CGCCGC	Design primers
2740058	TCTTCTTCTTCGTCGTCTTCTTCC	Design primers
2751192	GTCTCAGGTGGAGTGGAA-GTCTCAGGTCGGGTGGAA-ATCTCAGGTCGGGTGGAA-ATCTCAGGTCGGGTGGAA	Design primers
2760444	ACGCCTACGCCGACGGCTACGGCT	Design primers
2778095	CC-GC-GC-CG-GC-GC-CC-AC-GC-AC-GC-GC	Design primers
2792422	GGCGGCGGGCGTGGCGGCCGGCTTGGCGGCGGGGGC	Design primers
2820353	TCAGGCAAATCCCCTTCGGGCAAATCCCCGTCCGGAAAACCCCCT	Design primers
2821746	CGCGGGCGCGGCGGCGGGCGTGGG	Design primers
2828429	GGGCTGGGATTG-GGGCTGGGATTG-GCGCTGGGATCG	Design primers
2872974	TCGCCGCCATCGCGGCCATCGCCGCCC	Design primers
2890930	CGGCTCGGCAGGTGACGGTTTGGCAAGTGACGGTTTGGCAGGTGACGGTTTGGCAGGTGG	Design primers
2893510	GGCGGCTTCGGCGGCGTCCTCGGCGGCGGCATCCGC	Design primers
2906535	GGCTCGGCGCGGACCGGCTCAGGGCGGGCCGGCTCGGCGCGGGCG	Design primers
2913273	CGCCGCCGCCACCGCCACCGCCGA	Design primers
2937383	GCGAGGCCGAGGCCGAGGGCGACG	Design primers
2983637	TGGGGTTGGGCTTGTGGTCGGGGT	Design primers
3016563	CACCAG-CACCAG-AACCAG-CCCCAG	Design primers
3018648	AGTGGGGCGGCCAAGAGCGAGCCGGCCAAGAGCGGGGCGGTGAAG	Design primers
3018768	AAGACCTCCGCCTCAAGGACCGCCGCCTCAAAGACTCCCGCATCA	Design primers
3069209	TTTCCCGTCACACCCGTTCCTGTCACACCCGTTCTTGTCACACCC	Design primers
3082470	GGCGCT-GGCGCT-GGCGGT-GGTGCT	Design primers
3153366	GCTGCGGATAGCCCTGCTGCGGGTAGGCCTGCTGCGGATAAGGCT	Design primers
3198768	TCAAGGGCAAGGACAAGGTGAAGG	Design primers
3203199	CGACGACGCCGATGACGACGACGC	Design primers
3245680	GTGCCG-GTGGCG-GTGGCG-GTGCCG	Design primers
3291072	GACAGA-GAAAGA-GAAAGA-GAGAGA-GAGAGA	Design primers
3396525	GGCTGGGCGACGAACTGCTGGGCGGCGAGCTGCTGGCCGGCGAAC	Design primers
3421902	GGCCGAGGCCGCAGCCGAGGCCGA	Design primers
3433838	TGATCGTGTGCCGAGTTATCTTGTGCCGAGTGGTCTCGTGCCGAG	Design primers
3442251	GGGTCTTGGTGGGGCGGGTCTTGACGGGGCGGGTCATGGCGGAGC	Design primers
3458903	GTCTCGGCCAAGCCCGCTTCCGCCAAGCCCGCCTCGGCCAAGCCG	Design primers
3476744	ACCTGCGCCCAAGCCCCTTGCGCCCAAGCCCCCGGCGCCTAAGCC	Design primers
3482865	GAGGACGCCGAGGTGGACGACGAGGATGACGCCGTG	Design primers
3494934	ATCGCGGGGGAGGGCATCGCTTGGGACGGCATCGCGGGGGGCGGC	Design primers
3510525	CGCAGCAGCCTTGGGAGCGGCAGCCTTAGGGGCAGCAGCCTTGGC	Design primers
3510665	CGGCGGGCTTGGCGGCGGACTTGGCGGCCGGCTTTG	Design primers
3518603	GCTCTCGCTTTCGCTTTCGCTCAC	Design primers
3590494	GTCGAGGGCGAGGTTGAGGGCGAG	Design primers
3662432	CGGCGCGGTGCGGCGCGACGGGGCG	Design primers
3666469	GAGGCGAAGGCGGATGCGGTGGCG	Design primers
3711381	TCCAGTGGGCTCGTCCATTTGGCTCGTCCGGGGGGCTCG	Design primers
3714378	GTGGTCGTGAGCCGCGTGGTCGTGGCCGGCGTGATCGTGTCCCGC	Design primers
3718868	TCACCACGAAGGACACCACGAAAGGCACCACGACGG	Design primers
3735673	CGCGGGGATCCGGCGCCGGGATGCGGCGCGGGGATGCGG	Design primers
3778361	CCGCCCTCGCGTTCCGGGCCCTCGAGTTCCGGGCCCTCGAGTTCCGGGCCCTCGCGTTCT	Design primers
3781253	AGGCGGCACAAGGTCAAGCGGCTCAAGGTCAAGCAGCTCAAGGTC	Design primers
3785087	TCGTCATCATCATCATCATCATCATCGTCG	Design primers
3797535	GGGCGGCGCCATGCACGGCGGGGGCATGCAGGGAGGCGGCATGCC	Design primers
3807733	CGA-TGA-CGA-CGA-CGA-GGA-CGA-TGA	Design primers
3818735	TCACGC-TCTCGC-TCTCGC-TCTCGC	Design primers
3836161	AAGTCCGCCGCGAAG-GCATCCGCCGCGAAG-GCATCCGCCGCGAAG	Design primers
3856811	GCCGGCGCGGGCGCCGCCTCCGGC	Design primers
3880140	CGTCCT-CGTCCT-GGTCCT-GGTCCT	Design primers
3887062	CCGGTC-CCGGTC-CCGGCC-CCTGTC	Design primers
3897382	AAATCACACGCGCCCAAATATCTCGCGCCCAAATCACTCGTGCCG	Design primers
3934652	CCACCACCGCCACCAGCGCCACCGCCG	Design primers
3953592	GGCGCTCCAGGCTGCTCCAGGCTGCTCCAG	Design primers
4013642	GCCTTGCGGACGTGGCGGTCTCGCGGACGTAGCGGACTCGCGGGCGTGGCG	Design primers
4094062	GGCCGTCGAGCTGGCTGTCGAGCTGGCTGCGGAGCTGGCTGTAGAGCTGGCTGTCGAGCTGGCTGCCGAGCTGGCTGTAGAGCTGGCTGCCGAGCT	Design primers
4094159	GCTGCGGAGCTG-GCTGCGGAGCTG-GCCGCCGAGCTG-GCTGTAGAGCTG-GCTGTCGAGCTG-GCTGCCGAGCTG-GCTGTAGAGCTG-GCTGCCGAGCTG-GCTGCCGAGCTG-GCTGCCGAGCTG-GCTGTAGAGCTG-GCTGCCGAGCTG-GCTGCCGAGCTG-GCTGCCGAGCTG-GCTGCGGAGCTG	Design primers
4094340	CCGTCGAGCTGGCTGTAGAGCTGG-CTGCCGAGCTGGCTGTAGAGCTGG-CTGCCGAGCTGGCTGCCGAGCTGG-CTGCCGAGCTGG	Design primers
4094425	TGCGGAGCTGGCCGTCGAGCTGGC-TGTAGAGCTGGCTGCCGAGCTGGC-TGTAGAGCTGGCTGCCGAGCTGGC-TGCGGAGCTGGCTGCGGAGCTGGC-CGCCGAGCTGGCTGTAGAGCTGGC-TGCCGAGCTGGCTGCGGAGCTGGC-TGCCGAGCTGGCTGCCGAGCTGGC	Design primers
4227780	TCGTCGCCCCCGATACTGGCGCCCCCGATACTGGCGCCCCCGATA	Design primers
4247156	CTGCCGTTGCCGCTGCCCCCGCCG	Design primers
4249981	TTGGTGTCCTTGGCCTTGGCGTCCTTCGCCTTGCTGTCGTGGGCCTTGGCGTCCTTGGCCTTGGTGTCCTTGGCG	Design primers
4286785	GCCTGCGGCCAAGCCCGCCGCCAAGCCCGCCGCCAA	Design primers
4303168	CCCGCCGCCGCCCCCGCGCCCACC	Design primers
4306394	CCAGGCGCAGGCGCAGGCCCAGGT	Design primers
4307375	CAAGAAGACGCAAGGCACGAAGACGCAAGCTACGAAGGCGCAAGG	Design primers
4311019	CGGCCGCTGCCGCGCCTGCGGCTGCTGCGCCCGCCGCTGCTGCGC	Design primers
4374454	TGGTATGAAATGATATGAATTGATACGAAA	Design primers
4374597	AAATGATATGAAATTAGATGAATTGAGATG	Design primers
4405518	GTGGTCGTGAGCCGCGTGGTCGTGGCCGGCGTGATCGTGTCCCGC	Design primers
4455643	GGCAGCGGCCGCGGCAGAGCCAGC	Design primers
4479873	GCCACCGCCGCCGCCACGTCCACC	Design primers
4487707	ATCGCGGTGATCGCGCTGATCGCGGGG	Design primers
4495390	TCGCCTTCTCCTTCGCCCTCGCCG	Design primers
4510298	CCGCCAGCGCCTCCAGCGCCGCCGGCG	Design primers
4531339	GGGCCTTCATGACACCTTTGCCTTCATGACACCTTCGCCTTCATGGCACCT	Design primers
4547242	CTGGAGCTGAAGCTGGTGGTGGAG	Design primers
4601805	CACGATCACGCCCATGATGATCATGCCCATCACGATCATTCCCAT	Design primers
4617688	CACGGC-CACGGC-CGCGGC-GACGGC	Design primers
4630909	GAGGCGGAGGTGGAGGAGGCGGCG	Design primers
4669937	GGTGGC-GGTGGC-CGTGGC-GGTGGC	Design primers
4754673	GAGCCGGAGGCGAAGCCGGAGGCGAAGCCG	Design primers
4819313	GCTGGT-GCTGGT-GCTGCT-GCCGGT	Design primers
4823966	TCGCCATCGTCATCGCCATCGTCA	Design primers
4848042	GGCGGAGCGGGGCGTGGCGAGGCCG	Design primers
4863628	GGACGAGGAGCGATTGGACGACGAGCGATTGGACGACGAGCCGTT	Design primers
4896327	GCGGCCGCGACCGTGGCCGAGGCC	Design primers
4902977	GCGGTGGCGCTGGTGGTGGCGCTG	Design primers
4903270	CCCGCCCCGTCCCGCTCCGCCCGGC	Design primers
4961951	CGCCGGCGACGGCGCCGAAGCCGG	Design primers
4962758	GATCCTGCGACCGAGGATCCTGCGACCTGGGATCCTGCGATCCCG	Design primers
5028603	CCTTGCCGGCCCTAGCCGGCCCTAGTCGGC	Design primers
5117568	GGCGGCAAGAAACGCGGCGACAGGAAACCCGGCGGCGAGAAACCC	Design primers
5121455	GCCGCCGGG-ACCGCCGGG-ACCGCCGGG	Design primers
5121762	CCCGGACCGCCCGGGCCGCCCGGACCG	Design primers
5121790	CTGGACCAC-CTGGACCAC-CTGGACCAC	Design primers
5122542	GGTGCCGGCATGGGGGCGGCCGGCATGGGAGGTGCAGGACTGGGG	Design primers
5136711	CGTCGTGGTCGGCGTGGTCGTCGTGGG	Design primers
5161914	CGA-GGA-CGA-CGA-GGA-TGA-GGA-CGA-GGA-CGA-CGG-GGA-TGT-CGA-CCA-GAT-CGA-CGA-GGA-AGA-GGA	Design primers
5186548	GCTGGCGCGGGCGCTGGCGCTGGG	Design primers
5238335	CTG-CTG-GCG-CTG-CTG-GAT-CTG-CTG-TTG-CTG-ACG-CTG-CTG-GAT-CTG-CTC-CTG-CTG-GCG-CTG-CTG-CTG-TTG-CTG	Design primers
5239077	GGACGACCAGGACCACCAGGACCACCA	Design primers
5239218	GGACCACCAGGACCGCCAGGCTCACCAGGACGGCCAGGACCACCCGGATAGCCA	Design primers
5243234	CCGCCCCGGCCCCCTCCCCAGCCC	Design primers
5273712	CGCCGGCGCTGGCGGCGGCGCTGG	Design primers
5275290	GCCGAGGCGGAGGCCGAGGCCGCG	Design primers
5285995	GGCCGCACCGGCCGCGCCGGCCGCGCC	Design primers
5286208	CGCGAGGCCCGTCCCGAGCGCGAGCCCCGTGCGGAGCGGGAGCCCCGTCCCGAG	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

6121

GCGCGCA-GCGCGCA-GCACGCA-GCACGCA