Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Mycobacterium sp. KMS

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
31654	GTAGCCGCCCTGGTCTGGGTAGCCGCCCTGATCGGGGTAGCCGCCGCGGTCGGGGTATCCGCCCTGCTCGGG	Design primers
76436	CGAACCCGTCGA-GCAACCCGTCGA-GCAACCCGTCGA	Design primers
150385	ACCGAG-CCCGAG-CCCGAG-CCCGAG	Design primers
150466	GCCGAGCCCGAGGTCGAGGCCGAA	Design primers
151198	GCTCGTGCTCGGGCACGTGTTCGT	Design primers
180606	CCGGCGCCGCCGCCGACGCCGGTG	Design primers
198826	CGTCCCCGGCTGAGTCACGCGCCGGCCCGCCGGCTGAGTCACGCGCCGGCCCGCCGGCTGAGTCACGCGCCG	Design primers
236628	GTCGGCAACACCGGCGTCGGCAACGTCGGCTTCTTCAACACCGGC	Design primers
248269	CCGCCGACCCCGGCCGATCCCCTCCGACGC	Design primers
258280	GGCGGTGGCGCTGGGGGTGACGGT	Design primers
301295	TCGGCCTCGTCCTCGGACTCGGCG	Design primers
348069	TCGTAGTTCATGGCACCGAAGTTCATGGCACCGTAGTTCACAGCA	Design primers
411513	GACGGCTCCGATGGCTCCGATGGCTCCGACGGCTCG	Design primers
428369	CGG-CCG-CCG-CCG-CGG-CGG-CGG-CCG	Design primers
454331	GAC-CAC-GAC-GCC-GAC-CAC-CAC-CAC-CAC-GAC-GAC-GAC-CAC-CAC-GAC-GAC-GAC-CAC-GAC-AAC-CAC	Design primers
454419	ACGACGACGACGCAGCCGACGACCACACAGCCGACCACGACCCAGCCGACGACCACACAG	Design primers
463237	TGACGAACCGGTTGT-CGAAGAACCGGTCGT-CGAAGAACCGGTCGT-CGAAGAACCGGTCGT	Design primers
470154	CGACGGCGACGACCGCGACGACGGCGC	Design primers
470281	CACCAGCACGACCACGAGCACCACCGTCAGCACGAC	Design primers
487061	CCGCGCCGCTCCCCGCGGCGCCGCC	Design primers
487269	GCAGCCGAAGCCGCAGACGCCGCC	Design primers
487501	TACGGCTCAGGGTCTGGCTCAGGGTCCGGCTCCGGG	Design primers
497681	CGGGTTCGGGTGCTGGTTCGGCTT	Design primers
503510	GTCGGCCGCGTGGTGGTCGTCGTCGGCTGGGTGGTCGTCGTGGTCTGTTGGGTGGTGGTCGTC	Design primers
512965	CGTGGTCTCGGGCGGCGCCGTCGTCTCCGTCGGCGCCGTCGTCTCGGTCGGCGA	Design primers
515510	GCCGGG-CCCGGG-CCCGGG-CCCGGG	Design primers
558274	GCTGCTGCTCCTGGTGCTGCTGTT	Design primers
564740	CGATCACGATCGCGATGACGATCG	Design primers
630868	ACGGCTGTCCGTAGGCGGGCTGGCCGTAGGCCGGCTGACCGTAGG	Design primers
636720	TGCGCGCTGCCGGGCGCTGCTGCTCGCCGC	Design primers
714394	CGGCCAAGAAGGCCCCGGCCAAGAAGGCTCCCGCGAAGAAGGCTCCGGCCAAGAAGGCTCCGGCCAAGAAGGTCA	Design primers
717038	CCAGCGCCCGCGCCCGCGCCAGCA	Design primers
732958	CGACGACGTCGACGTCGACGAGGA	Design primers
749856	CAGGACAAGGCC-AAAGACAAGGCC-GAAGACAAGGCC-GAAGACAAGGCC	Design primers
761009	CGAGGGCGAGCGCGAGCGCGACGG	Design primers
820341	GGCCGCCGCGCTGTCCGCCGCGGTGGCCGACCCGCT	Design primers
841911	GCGAAGACCTCGCCGAGGACGAAGACCCCGACGAGGGCGAGGACCTCGACGAGC	Design primers
864171	CACCGCCACCACCGCCGCCGCCGC	Design primers
918879	TGG-CGG-TAG-CGG-CGG-CGG-TGG-CGG	Design primers
991228	TCGCGGGGAAAAGGCGGGGAAAGGGCGGGGAAA	Design primers
1142254	AGGCGGAGCCGGAAGCGGAGGCGG	Design primers
1298076	CGGGCCGATCGGGCCGGTCGGGGCGAT	Design primers
1301585	CCGCGGCGGCGATGTCGGCGACGCCGATGTCCGCGGTGGCGTTGT	Design primers
1324011	GCTGGCCAAGCTGGCGAAGCTGGCCGA	Design primers
1360671	CCGCCACCTCCGCCGCCTCCGCCGCCGCCGCCGCCG	Design primers
1360714	CGCCGCCTCCGCCGCCACCACCGCCCCCGCCGCCGG	Design primers
1510942	GACGCCGACGGCGGCGCCGACGCC	Design primers
1597504	GCGATC-GCGTTC-GCGTTC-GCGTTC	Design primers
1608445	GCAGTC-GATGTC-GATGTC-GATGTC-GATGTC-GATGTC	Design primers
1618617	CGG-CGG-TGG-TGG-CGG-AGG-CGG-AGG-TGC-CGG-CGG-TGG-AGG-TGG-CGG	Design primers
1666190	CGCCCG-CGCCCG-CTCCCG-CGCCGG	Design primers
1673033	ACATCGAAAACGACATCGCGAACGACATCGAAGACC	Design primers
1775654	ACTCGC-CCTCGC-CCTCGC-CCTCGC	Design primers
1868703	GAGCGGCGGCTGGCGGCGGCGACCGTCGGC	Design primers
1950398	CGACATCGACTTCGACACCGAGAT	Design primers
2017557	GGTCAGACCACTCGATCAAACCACTCGGTCATACCACTCGGTCATACCACTA	Design primers
2088040	GCCGCGAAGAAGGCCCCCGCCAAGAAGACCGCCGCGAAGAAGACC	Design primers
2092124	GAC-CGC-CGC-GAC-CGC-GGC-GGC-CGC-CGC	Design primers
2098308	GCGGGGATCGCCGGCGGCGACGGGATGGCCGGCGGCGCGGGGATGGCAGGCGGCGAGGGGACCGCGGGCGGC	Design primers
2122232	GAGCCCGCGCCCGAACCCGAGCCCGAGCCC	Design primers
2222044	CTCGCCGCCGGTCGCGGCCGCCCGCCGCCG	Design primers
2242876	ACGTCGACCTCGACGCCGTCGTCG	Design primers
2287379	GACTACGACGAATACGACGATTACGAC	Design primers
2318033	GTCGTCGCCGTCCTCGTCTTCGTC	Design primers
2319823	GGGCCCGGGCCGGGGCGCGGGCCC	Design primers
2330814	GAACCGGCCGACGTAGGACCGGCGGACGAAAAACCGGCGGACATAGAACCGGCGGACATAGAACCGGCTGACGAG	Design primers
2350171	CGCCGCCCCCGCCGCCACCGCCGG	Design primers
2389569	CGGTCTCGCCACCGGTGTCCCCACCGGTCTCGCCTC	Design primers
2389706	AGCTCCTCCTCGTCGAGATCCTCCTCGCCGAGATCCTCCTCACCGAGCTCCTCCTCGCCG	Design primers
2390940	CGTCGAGGTCGATGTCGACGTCGA	Design primers
2394668	GGGAGGTCGGCGAGGTCGGCGAGGTCG	Design primers
2407101	GCGTTCGCATTCGCGTTCGCGTTC	Design primers
2428615	CACCGTGGCCGACCGGGACCACACGCTCACCGACCGGGACCACACGCTGACCGACCGGGACCA	Design primers
2428730	CAGACCGGTCCGCAGCCGATGGCC-CAGACCGGTCCGCAGCCGATGGCC-CAGACCGGGCCGCAGCCGATGGCC	Design primers
2437877	CCAAGGGCGACGCTTCGAAGGGCGACGCTTCGAAGACCGACGCTT	Design primers
2441392	CCGACGCCGACAGCGACGCCGTCG	Design primers
2501831	CGT-CGA-CGA-GGA-CGT-CTA-CGA-CGA-CGA-GGA-CGA-GGA	Design primers
2542837	GCCGCCGCGGCCGCCGTCGCGGCC	Design primers
2548728	CGG-CGG-TGG-CGG-GGG-CGG-CGG-CGG	Design primers
2582060	CCGCGGCGGCGGCCACGGCCTCGG	Design primers
2618700	GCGCCGGCC-GCGCCGGCC-GCACCGGCC	Design primers
2645112	CACCCCCACCGGCACCACCACCGGCACTCCCGCCGG	Design primers
2652770	TCAGTACGGTCAGCCGCAGTACGGGCAACCTCAATACGGCCAGCA	Design primers
2654408	GCGGCGGCGGCGTCGGCGGCCGCG	Design primers
2848416	CGTCGA-GGTCGA-CGTTGA-CGTTGA-CGTTGA	Design primers
2848501	GTCGGTGCCGGTGTCGGTGCCGGT	Design primers
2913331	GCGTCGGCGGCGGCGGCGGCGTTG	Design primers
2952280	CCAGGTCGGCCAGGTCGACCAGATCGG	Design primers
2983914	CGAGTACGCCGACGGCGACTATGCCGACAGTGAGTATGCCGACGA	Design primers
3041247	CGGAGCCTGAGCCAGAGCCGGAGG	Design primers
3054325	GACCTGACGGATCTGACGGACCTGGCG	Design primers
3080588	GAGCGCCCCGGGAGCCACCCGGTAGCGGCCCGG	Design primers
3094272	GGTGTCCGT-TGTGTCCGT-TGTGTCCGT	Design primers
3103595	GGCACCGCCGACACCGCCGACACCGCC	Design primers
3182999	TGCCGGCGGTGCCGGAGGCGCCGGCGG	Design primers
3207672	CGATCGCGATGATCGCGACCATCGCGA	Design primers
3215004	AAACGGACA-CAACGGACA-CAACGGACA	Design primers
3229653	GGTTGCGGCGCAGGCTGGGGCGCAGGCTGGGGCGCA	Design primers
3370508	GGGCCCAGGATTTTTCGGCCCGGGAATTTTCGGCTCAGGAATTTT	Design primers
3378774	CGACGCCGACGATGACGCCGTCGC	Design primers
3386581	CCTGGT-TCTGGT-TCTGGT-TCTGGT	Design primers
3398172	TGTGACAGATGTGACCGATGTGACCGA	Design primers
3446833	CGTCGGTTA-CGTCGGTCA-CGTCGGTCA-CGTCGGTCA-CGTCGGTCA	Design primers
3489194	ACCGGCGCGGGA-GCGGCAGCGGGA-GCGGCAGCGGGA-GCGGCAGCGGGA-GCGGCAGCGGGA-GCGGCAGCGGGA-GCCGGCGCGGGA-GCCGGCGCGGGA-GCCGGCGCGGGA-GCGGGCGCGGGA	Design primers
3489384	CACCCTGCGGGAGCGCGGTCTGCGGGAGCGCGGTCTGCGGGAGCG	Design primers
3489498	GCGCGGCGGGCCGCGGCGGGGCGGG	Design primers
3522312	CGG-CGG-CGG-TGG-TGG-CGG-CGG-CGG	Design primers
3538687	CACCTCCGAGGAGTCCGACAGCTCCGAGGAGACCGACAGCTCCGAAGAGACCGA	Design primers
3539059	AGAGCCCGAACCGGAGCCGGAACCCGAGCCGGAGCCGGAGCCCGAACCCGAACC	Design primers
3547576	CTTCGACGTTTAGTCGGCTCGCCG-ACGCGACGTTTAGTCGGCTCGCCG-ACGCGACGTCTAGTCGGCTCGCCG	Design primers
3574147	GGTCGGCCAGGCGGTCCGCGAGGCGCTCGGCCAGCC	Design primers
3751986	CGGCGTCGTCGGCCTCGTCGGCGTGGT	Design primers
3756422	CCGTTTCCCAACGTTTCCCAGCGTTTCCGA	Design primers
3770229	CTGCTGCTGCTGTTGCTGCTGCTGCAGCTG	Design primers
3777620	CCGTTTCCCAACGTTTCCCAGCGTTTCCGA	Design primers
3812378	TCATCGGAGTCCTCATCGGAGTCTTCGTCGGAATCC	Design primers
3812415	CGTCAGAATCCTCGTCCTCGTCGGAATCCTCGTCCTCGTCGGAATCCTCGTCGT	Design primers
3812482	GTCGTCGTCCTCTTCGTCGTCGTCGTTGTC	Design primers
3812545	ATCCTC-GTCCTC-GTCCTC-ATCCTC-ATCCTC	Design primers
3814740	CGTCGTCGTCCTCGTCTTCGTCGTCGTCCTCGTCGG	Design primers
3837368	CGCCGCCGCGGCCGCGGCCGCCGT	Design primers
3845410	CGTCGGCTTCGGTGTCGGAGTCGG	Design primers
3845439	GTGTCGGAGTCGGCGTCGGAGTCGGCGTCG	Design primers
3847387	CCGCCGTCCTCGTCGCCGGCATCCTCGTCGCCGCCGGTCACGTCG	Design primers
3897613	TTCTTGGCGGCC-TTCTTGGCGGCC-TTCTTGGCCGGC	Design primers
3923213	CGCCGTCCCCGCCGTTCCCGCCGGCCC	Design primers
3923567	CGCCGCCGAGGCCGCCGACACCGCCGA	Design primers
3923636	CGGCACCGC-CGGCACCGC-CGGCTCCGC	Design primers
3924500	CGCCGTTGCCCCCGTTGCCGCCGTTGCCGCCGTTGC	Design primers
3924543	CCCGCCGTT-GCCGCCGTT-GCCGCCGTT	Design primers
3924588	GGCGCCGTTGCCGCCGTTGCCGCCGTT	Design primers
3924769	CCGTTGCCG-CCGTTGCCG-CCGTTACCG	Design primers
3924895	GTGCCGCCG-CTGCCGCCG-CTGCCGCCG	Design primers
3925033	GTGCCGCCGGTCCCGCCGGTGCCGCCG	Design primers
3933251	GCG-TCG-GCG-TCC-TCG-TCG-GCG-GCG	Design primers
3992678	CCTCTGTCGAGGGCTTTGTCGAGGGCTTTGTCGAGG	Design primers
4019164	ACG-GCG-ACG-CCG-ACG-ACG-TCG-GCG	Design primers
4067144	GACGTCGAAGTCGACGTTGACGCC	Design primers
4094614	CATCCCCCATCGCATCCCCCATCCGATGCCCCATCG	Design primers
4114202	TGCTCGCGCTCGTGCTGGTGTTCG	Design primers
4144912	TCGAAGAGCTCGAACAGCTCGATGAGC	Design primers
4168241	TGCACCTGCGCCTGCCCCTGCACC	Design primers
4172833	TCGAAAACAGCGTCCCCGAGAGCAGCGTCCTCGAAAACAGCGCCG	Design primers
4179881	GCCGTC-GCCGTC-GTCGTC-GCCATC	Design primers
4180031	CTGCTCGCCCTTCGGCTGGTCTCCCTTGGGCTGCTCGCCGTCGGG	Design primers
4180164	TCAGCCTTCACCTCG-GGGGCCTTCACCTCG-GGGGCCTTCACCTCG	Design primers
4211751	CCCGGACCGCCGCCGGGCCCGCCGCCCGGTCCCCCG	Design primers
4225311	CGCCTTCTTGGCAGGCGCCTTCTTGGCCGGGGTCTTCTTGGCCGG	Design primers
4225485	CTTCTTCACGGGAGCCTTCTTTACGGGAGCCTTCTTTGCGGGCGC	Design primers
4228902	TGAGATCGAGATTGAGGTCGAGAT	Design primers
4271924	CGCCGGAGCCGGCGCCCGCCCCGGCGCCGA	Design primers
4285931	CAGTATCAGCAGCCGGACTACCAGCAGCCGCAATACCAGCAGCCCCAGTACCCGCCGCCG	Design primers
4347248	AGAACGCGAACGATGACAACGCCAACGACGACAACGCGAACGACC	Design primers
4353126	CACGGCCACGGACACCGCCACGGT	Design primers
4353776	CGGCGGTGGCGGCGGGGGCGGCAG	Design primers
4358721	GCTGGGGCTGGCGCTGCGGCTGGC	Design primers
4392738	CCGGCCTCACCGGTCTCATCGGCCTCA	Design primers
4425206	GCGTCGGCGACGTCGTCGGCGTGG	Design primers
4481176	CCTCCTCGACCTCCCCGACCTCCTCGA	Design primers
4486633	CGTCGACGTGGAGGTCGACGTCGA	Design primers
4519391	TCGCCGTCGCGGTGGCCGTCGCGG	Design primers
4521941	CGTCGCCGGCGCCGACGCCGTCGA	Design primers
4527122	CCGCAACCACAACCGCATCCGTAACCACAACCACAA	Design primers
4551959	CGG-CGG-CGA-CGG-CGG-CGC-CGC-CGG	Design primers
4552415	CGGCAACGGCGGGAACGGCGGCGACGG	Design primers
4552460	CGGCGGCCGCGGCGGCGACGGTGG	Design primers
4599160	TCATCGAGTTCCTCATCGAGTTCGGCGTCGAGTTCC	Design primers
4632807	CCGTCGGTGGGGGCACTGTCGTTGGGGGGACTGTCGTTGGGGGCACTGTCGTTGGGGGGA	Design primers
4641053	GACCTTGACCTGGGCCTTGACCAT	Design primers
4665422	CATCGCGCCGGTGGCGCCAAGGGA-GTCAGCGCCGGTGGCGCCAAGGGA-GTCAGCGCCGGTGGCGCCAAGGGA	Design primers
4681828	AAGAAGGCCCCGGCCAAGAAGTCGGCGGCCGAGAAGGCTCCCGCC	Design primers
4692460	CGCCGCGACGCCGCCACGCCGCGC	Design primers
4787438	GCCGGAGCCCGAGCCGGAACCGGA	Design primers
4797768	CCCGCCCCGGCCCCCGCGCCCGTCGCCGCC	Design primers
4798133	CGCCCC-GGCCCC-GGCCCC-GGCCCC	Design primers
4836989	ACCCGA-GCCCGA-GCCCGA-CCCCGA	Design primers
4838823	TGGCGATCGCGACGGCGATGGCGA	Design primers
4886188	CCGCGCCGCCCTGCGCCTCGCCGCG	Design primers
4923133	CCGGCAACGGACCGGGCAACCGACCCGGCAGCGGGC	Design primers
4926039	CGCGGGGTCCGGCGGGGTCACGCCGGGTGC	Design primers
4972695	CGGCGAGC-CGGCGAGC-CAGCGAGC	Design primers
4987486	ATC-ATC-GTC-GTC-ATC-ATC-GTC-ATC-GTC-ATC-GTC-ATC-ATC-GTC-GTC-ATC-ATC-GTC-ATC-GTC-ATC-GTC-GTC-ATC-GTC-ATC-GTC-ATC-GTC-ATC-GTC-GTC-ATC-ATC-GTC-ATC-GTC-ATC-GTC-ATC-GTC-ATC-ATC-GTC-ATC-ATC-GTC-ATC	Design primers
4987631	TCGTCATCA-TCGTCATCA-TCGTCATCA-TCGTCATCA-TCGTCATCA	Design primers
4987677	CATCGTCATCGTCGTCATCGTCGTCATCGTCGTCAT	Design primers
4987714	GTCATC-GTCATC-GTCATC-GTCGTC-GTCGTC	Design primers
4987745	TCGTCATCGTCATCATCGTCATCGTCGTCGTCGTCGTCATCGTCATCGTCATCGTCATCG	Design primers
4987806	CATCGT-CATCGT-CATCGT-CATCGT	Design primers
5005560	GCCGCCGCCACCGCCGTCGTCGCC	Design primers
5079190	GGTTCG-GGTTCG-GGCTCG-GGTTCG	Design primers
5093498	ACCAGCACGACCAGCCCGACCAGCACG	Design primers
5108951	CTGGTGGTGGTGCTGGCGCTGCTG	Design primers
5116341	CGCCTTCTTCGCCGCGGTCTTCTTGGCCGCGGTCTTCTTCGCCGGCGCCTTCTTGGCCGC	Design primers
5329306	CGCCGACACCGACGGCGACACCGA	Design primers
5337165	AACCCC-CACCCC-AACCCG-AACCCG-AACCCG-AACCCG	Design primers
5361077	CACCCGGTCTGACGACGCCCGGTCTCACCACACCCGGCCTGACCACGCCCGGTCTGACCACGCCCGGCCTGACCA	Design primers
5371348	CCC-CCG-CCG-CCG-CCT-CCG-CCG-CCG	Design primers
5375621	CACCGCCACCACCACCACCGCCGC	Design primers
5388672	GAAGAAGGCACCCGCCAAGAAGGCCCCGGCGAAGAAGGCTCCGGCCAAGAAGGCCGCCGCGAAGAAGGCGCCCGC	Design primers
5460501	CCGCCGAACCGGACTACACCGCACCGGACTACACCGCACCGGACTACGCCGAACCGGAGT	Design primers
5487866	AGG-CGG-GGG-TGG-TGG-CGG-CGG-AGG-GGG-TGG-CGG-CGG-CGG-TGG-CGG	Design primers
5493532	GGGGCCGGGGCTGAGGCCGGGACC	Design primers
5522375	CGTCGGCATCGGCGTCGACGACGG	Design primers
5531468	GGTGGC-GGGGGC-GGGGGC-GGCGGC	Design primers
5548923	GCCGGGGTGGCCGCGGTGGCCGAGGTG	Design primers
5561006	GCACGGAAAGCCACGGAAAGGCACGGCACG	Design primers
5582081	CCCACG-ACCACG-ACCACG-ACCACG	Design primers
5594627	CGCCGACGCCGCGGCCGACGCCGT	Design primers
5630543	TGCTGCTGATGCTGGTGCTGCTGG	Design primers
5637889	GGCCTGGTCGTCGGCCTGGTCACCGGCCTGGTCGGC	Design primers
5642901	TGATGCCCGGTATGGGCGGCATGCCCGGTATGGGCGGGATGGCCGGTATGGACG	Design primers
5703829	TCTTCGTCG-TCTTCGTCG-TCTTGGTCG	Design primers
5722488	GTTCCC-CTTGCC-GTTGCC-CTTGCC-GTTGCC-GTTGCC	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

31654

GTAGCCGCCCTGGTCTGGGTAGCCGCCCTGATCGGGGTAGCCGCCGCGGTCGGGGTATCCGCCCTGCTCGGG