Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Leptothrix cholodnii SP-6

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
10529	TC-AC-GC-CC-AC-GC-GC-AC-GC-CC-AC-GC	Design primers
11123	CGCGGGTGACGCGACCCGGGTGATGCGACCCGGGTGATGCGA	Design primers
25869	CGCCGCGCCTGGCCGCGCTGCGGCG	Design primers
35536	CAGGTG-CAGGTG-CAGGTG-CCGGTG	Design primers
35561	GGGAGC-GGGAGC-GGGAGC-GGGAGC	Design primers
35586	GGGGCA-GGGGCA-GGGGCA-GGGGCA-GGGGCA	Design primers
35645	CGGTGCCGGGGCAGGTGCAGGTGC	Design primers
36355	CGTCGTCGTTGTCGTCGTCGTCCT	Design primers
152513	GGCATGGGCGGCATGGGTGCCATGGGC	Design primers
154649	TCGGCATCGCCATGGGCACCGGCA	Design primers
164544	GCTGCGACTGCGGTTGCGGCTGCC	Design primers
189372	CCCGA-CCCGA-CCCGG-CCTGA-CCCGC	Design primers
193642	CCGCTG-CCGCTG-CCCCTG-CCGCCG	Design primers
195279	CGC-CGC-CGC-CGT-AGC-CGC-CGC-CAC-CAC-CGC	Design primers
195317	CCGCCGCCACCGCTGCGGCCACCACCGCCGCCGCCGCCACCGCCG	Design primers
248288	GCTCTGAC-GCCCTGAC-GCCCTGAC-GCCCTGAC-GCCCTGAC	Design primers
348148	GAGATCGAGTTCCAGATCGAGAGC	Design primers
353767	GGAACAGGAAGAGAAACAGGAACAGGAACA	Design primers
371680	CCGGCACCGGCTCCCGCACCGGCG	Design primers
406814	CCCGCACCG-GCCGCACCG-GCCGCACCG	Design primers
408235	ATCGCCTGCAGCGCCTGCATCGCCTGG	Design primers
422863	AGCGCCCGCCAAGGCGCCCGCGAAGGCGCCTGCCAA	Design primers
422924	GCGAAGAAGGCTGCACCGGCAACCAAGGCTGCACCGGCCAAGAAGGCCGCAGCG	Design primers
431605	TCAACCTCAAGCTCAGCCACAACC	Design primers
443695	CTGATCCACTGAGCCACTGACCCA	Design primers
492668	GCGGTGGCGGCGGCGCTGGCGCTG	Design primers
518453	GGGCCGGTG-CGGCCGGTG-CGGCCGGTG	Design primers
522190	GGCGGCATGGGTGGCATGGGCGGCATGGGCGGCATG	Design primers
529463	CTG-CTG-CTG-CTG-CTG-GTG-ATG-CTG	Design primers
532394	TGAAACGCCAGG-GAAAACGCCAGG-GAAAACGCCAGG	Design primers
541598	GGCGCA-GACGCA-GACGCA-GACGCA-GACGCA	Design primers
565586	GACGAGGCCGACGTGGCCGACGTGGCC	Design primers
602571	CGGTGC-CGGTGC-CGGGGC-GGGTGC	Design primers
602655	GCCGCCGCCGCTGCTGCCGCCGCGTCCGCCACCGCC	Design primers
607868	TCGTGTGTG-TCGGGTGTG-TCGGGTGTG-TCGGGTGTG-TCGGGTGTG	Design primers
641501	AG-CC-CG-AG-CC-GG-CG-CC-CG-CG-CC-CG	Design primers
710471	CCGGTCGCCGCGCCGGTGGCCGAGCCGGTCGCGGCA	Design primers
715669	GCGCCGTCGCCGGCGTCGGCGCCC	Design primers
726092	AGCTGCACAAGCTGCGCAAGCTGCACC	Design primers
739949	CCCCACGCCGCCACGCCCTCACGC	Design primers
764251	TTGGCC-TCGGCC-TCGGCC-TTGGCC	Design primers
783568	TCGACCGGTCCACCGGTCGGCCGG	Design primers
796515	AGCAGGTCGCGCAGGTCGAGCAGGTCG	Design primers
799937	GGGAGC-TGGAGC-TGGAGC-TGGAGC	Design primers
799973	AGGCTCTGGAGCGGGTGCCGGCACTGGAGCCGGTGCTGGCGCTGGAGCCGGTGC	Design primers
802555	TCGGGCGCGGCGTCGCGCGCGGCTTCGATCGCGGCG	Design primers
808431	CCGCTTTCT-GCGCTTTCT-GCGCTTTCT	Design primers
812456	CGCGTCGAGCGCCTCGAGCGCGCCGAG	Design primers
878624	CGGCGGAGGGGCCGGCGGCGGCGGCGGGGCGGGCGGAGGTGGCGGGGCCGGCGG	Design primers
878801	CGG-CGG-CGG-TGG-TGG-CGG-CGG-CGG-CGG-GGG	Design primers
886366	TGCTGCTGCTGTCGCTGCTCCTGC	Design primers
1022438	AGCCGGCGCGGGCGCGGGTGCCGGCGCAGGAGCGGGGGCCGGTGCGGGTGCGGG	Design primers
1059273	CTGCAGCAGCAGCGGCAGCTGCTG	Design primers
1128154	GGCCGGCTTGGCGGGCTTGGCCGGCGT	Design primers
1186431	CGACGAACCTCCGGAAGACGAACTGCCGGACGACGAGCCGCCGGA	Design primers
1224546	ACCCGGCGCGGCCCGACGCGGCCCGGCCCG	Design primers
1249697	GCGCAGCGGCGCGGCGGTGCAGCG	Design primers
1313614	CCAGCA-CCAGCA-GCACCA-GCAGCA-CCA	Design primers
1317059	CGCCTGAGCCTGCGCTTGCGCCTG	Design primers
1342394	GGC-GCC-GTC-GCC-GCC-GCC-GTC-GCC	Design primers
1374030	AAGCGGGTT-CAGCGGGTT-CAGCGGGTT	Design primers
1376767	ATCCGCCCG-CTCCGCCCG-CTCCGCCCG	Design primers
1386301	CCAGGCCGAGGCCCTGGCCCAGGC	Design primers
1423683	CGCGGCCGAGGCCGCTGCCACGGC	Design primers
1429154	ATCGG-TTCGG-ATCGG-ATCAG-GTCGG	Design primers
1461958	GTGGCGGTGGTGGTGGCGGTGGCC	Design primers
1516466	CGGTGCTGGTGCCGGCGCAGGTGC	Design primers
1542153	GCGCCAGCGCCGCCGCCAGCGCCA	Design primers
1649708	CGCCGGCGGCGGCGCAGGCGGCGG	Design primers
1670715	GCCGGTGCCGATGCCGGAGCCGGT	Design primers
1703090	GCCACCGCCAGCGCCACCGCCACC	Design primers
1742236	CCAGCGCCAGCCCCTGCGCCAGCA	Design primers
1743812	CGCTGCTGCTGCCGGTGCCGCGGC	Design primers
1756863	GCTGCGGCGCCGGCTGCTGCGCCTGCTCCGGCACCG	Design primers
1764642	GCCGCCACTCCGGCCGCCACCCCGGGCGCCACTGCG	Design primers
1871056	TGCCGCTGACGCCGCCGCTGGCGC	Design primers
1878418	CTGACCACCGCGCAGGTCGTCGCGCTGAGCACCGCCCAGATCGCCGCGCTGACCACCGCACAGGTCGAAGCC	Design primers
1887112	CTGGTGGTGGTGATGCTGGTGGCGGTGCCGCTGGTGCTGTTGCTG	Design primers
1919012	AGCTGGCGCAGATGGCGCAGCTGACGC	Design primers
2000402	GCCCAGGCGCAGGCCGAGGCCGAG	Design primers
2078273	ACGGCGCCGGCGACCGCGACGGCC	Design primers
2084097	CTTCGCCGGCTTCGCGGGCGTCGCCGG	Design primers
2098937	GCCGGCGCCGGGGCCGTCGCCGGC	Design primers
2099623	ATCAGCATCACCAGCAGCACCAGC	Design primers
2143745	GCAGTCGGGGCAGCCATCGGGGCAGCAACCGGGGCA	Design primers
2146015	CGGTGCCGCCGGTGACGCCGGTGCTGC	Design primers
2184956	CCGCACCCCCACCCGCGCCGGCAC	Design primers
2233709	CAGCGCCAGTGCCTGCGCCACCGC	Design primers
2298684	CGGCGCCAGCGCCCGCGCCAGCGC	Design primers
2299515	CGCTGCTGCTGCCGCTGGCGATGC	Design primers
2382271	AGCGCTGCAGCGCGGCAGCGCTGA	Design primers
2390843	GGCGTTCCCA-ATCGTTCCCA-ATCGTTCCCA	Design primers
2410709	CCGACGCCGCCGCCGATGCTGACGCCGCCG	Design primers
2422464	CTGCCGTTACCCCGGCGTTACCCCGGCGTTACC	Design primers
2436795	CGCGCA-CGCGCA-CGCTCA-CACGCA	Design primers
2497303	ACGACCCGACGCAGGACAACCCGAAGCAGGACGACGCCATGCAGG	Design primers
2510461	GCGTGGCCG-ACGTGGCCG-ACGTGGCCG	Design primers
2512229	CCAGCACCAGCGCCTGCACCGGCA	Design primers
2513405	CGC-CGA-CGA-CGC-GGA-CGA-CGG-CGA-CGA	Design primers
2579664	GCTGGTGCTGCTGCTGGCGCTGGC	Design primers
2598161	CGGTGCCGATGCCGATGCCGATGCCGGTGGCGGCGC	Design primers
2618439	CCTCAAGCTCAACCTCGACCTCTA	Design primers
2650072	TCAACCGCCGTCCATCAACCGCCCTTCATCAACCGCCGGTCA	Design primers
2685633	GCGCTGCCGCTGACGCTGGTGCTG	Design primers
2698032	TCCGGCCGGTGCGGCCGGTGCGGCCGG	Design primers
2730366	CCTCGGCATCGGCATCGGCGTCGGCCTCGGCCTCGT	Design primers
2735042	GCGCCGGCCGTT-GCGCCGGCCGTT-GCGCCGTCGGTT	Design primers
2736488	GAGCTG-GACCTG-GACCTG-GATCTG	Design primers
2739389	GCCCCGGCCCGCGCCGCCCCGCCAC	Design primers
2748865	AGCCCG-AGCCCG-AACCCG-AGGCCG-AACCCG	Design primers
2831488	CGAAGGCAGCGAACGCAGCGACGGCAG	Design primers
2838933	TTGAACTTGGCCTTGAACTTGGTCTTGAACTCGTCC	Design primers
2848942	GCGTCGGCCGCATCGGCCGCATCGGCC	Design primers
2999197	GCGCATCAGCGCCGGATCAGCGCCGGATCAGCG	Design primers
3007854	CGAGCTGGTCGCGCTGGTCGAGCAGGT	Design primers
3108372	GCTCCAGATCCAGCGCCAGCTTCA	Design primers
3199995	ACCGGC-ACCGGC-CCCGGC-GCCGGC	Design primers
3206832	CGGCGCCGGCGACGGCACCGGCGG	Design primers
3207195	CGCCGGCTCCGGCGACGGCGTCGG	Design primers
3289142	ACTGCACAAACCGCACAAACCGCACAA	Design primers
3289220	GGTTTGTGCAGTTTGTGCGGTTTGTGC	Design primers
3306272	CATCCGCAGCCGCACCCGCATCGG	Design primers
3321777	CCGCCGCCAGCGCCACCGCCTGCGCCGCCGGCAGCG	Design primers
3353893	CGGCCCGACCCGGCGCGGCCCGGTC	Design primers
3355645	CTTCAACTTCATCGTCAACTTCGA	Design primers
3379177	TGCCGC-TGCCGC-TGGCGC-TGCTGC	Design primers
3413461	CGACGGCGCCGGAGACGGAGACGGAGACGGCGATGG	Design primers
3419781	GGGCGTCGGAGCGGGTGCCGGTGC-GGGCGTCGGAGCGGGTGCCGGTGC-AGGCGTCGGCGCCGGTGCCGGTGC	Design primers
3427019	CCACGGCTACGGCCACGGCCACGG	Design primers
3431868	GTGCTG-GTGCTG-ATGCTG-GCGCTG	Design primers
3444253	GCCTGCGCCGGCGCCAGCGCCAGC	Design primers
3450384	GCGGCAGCGGCCGGGGCAGCGGCT	Design primers
3459532	GATCACGCCGTCGATCACGCTGTCGATCACCGCGTC	Design primers
3491932	CGGCAGCGTCAGCGCCAGCGGCAG	Design primers
3501765	GTGTTCCCGTTGTTCCCGGTGTTCCCA	Design primers
3532546	GCGGAGGCCGAGGCCGAGGCGGTGGCGGCG	Design primers
3562473	GCGGTGACGGTGGCGCTGGCGATG	Design primers
3575626	TCGCTGCTGGTGGCGCTGCTGCTGGCGCGGCTGGTG	Design primers
3586662	ATCAGCATCACCAGCAGCACCAGC	Design primers
3588528	GGCTGC-GGCTGC-GGCGGC-GCCTGC	Design primers
3598036	CCGGCGCGGCCAGGCACGGCACGGC	Design primers
3636301	GCGGTCGCAGTCGCGGTCGCGGCC	Design primers
3725136	CACCAG-CACCAG-CGCCAG-CAGCAG	Design primers
3737073	CGCGGGCCTCGCCGAGGGCCTCGTTGCCGGCCTCGC	Design primers
3839675	ATCCTGATCCCGTTCCTGATCCTG	Design primers
3879540	CTCAAGTCGACCAACGAGGAGCTGCAGTCGACCAACGAGGAACTGCAATCCACCAACGAGGAG	Design primers
3890859	CGGTGTGAC-AGGTGTGAC-GGGTGTGAC-GGGTGTGAC	Design primers
3891100	GGTCACACCTGTCACACCCGTCACACC	Design primers
3913227	GCCAAG-GGCAAG-GGCAAG-GGCAAG	Design primers
3984157	GCCAAGAAGGCCGCCAAGACCGCCGCCAAGCCGGCC	Design primers
4034407	CAGCAGCGCCAGCAGCACGAGCAGCGC	Design primers
4040004	GGCGGCGGCGGGGGCCGCGTCGGC	Design primers
4046358	CTGCTGCTGCTGCCGCTGCTGCTG	Design primers
4047498	CGCTGATCGCGGCCCTGATCGCCGCGCTGACCGCGA	Design primers
4099619	CGCTGGCGCTCGCGTTGGCGCTGG	Design primers
4140603	ATGCAGCGGCGGGCAGCGGCATGCGGCCGC	Design primers
4150001	TCTTGACCGGCGCCTTGGCCGGCGCCTTGACCGGTG	Design primers
4201954	CGCTGCTGGCGCTGGTGGCGCTGCTGC	Design primers
4294565	CGGTGCCGGAGCGGGTGCCGGGGCGGGTGC	Design primers
4294603	CCGGAG-CGGGGG-CCGGAG-CCGGAG-CGGGAG-CGGGAG	Design primers
4315691	GCCGTTCGAGCCATTCGAGCCGTTCGA	Design primers
4359293	CGGCCA-CCGCCA-CCGCCA-CCGCCA-CCGCCA	Design primers
4456923	CACCGCCAGCACCGACGCCAGCACCAGCCCCAGCAC	Design primers
4520046	GCGGTGATCGGCGCGGTGGCCGGCGCGGTGATCGGC	Design primers
4548093	CCGACG-CAGACG-CAGACG-CAGACG	Design primers
4604627	GGCCGG-CACCGG-CACCGG-CACCGG-CACCGG-CACCGG	Design primers
4628960	CCAGCGCCACCAGCACCACCAGCGCCA	Design primers
4641270	CGGCGACCGGCGAGGCGACCGACGCAGCCACCGGCGCGGCGGCCGGCG	Design primers
4643767	GCTGATGTGGCTGACGTGGCTGATCTG	Design primers
4645538	GGCCGCCGTGAGACGGCCGTGAGGAGGCCGTGA	Design primers
4685188	CGGTGCCGATGCCGATGCCGGTGTCGGTGA	Design primers
4707393	CGCGATGGCGATCACGATCGCGCT	Design primers
4718509	CGTCGAGAT-CGTCGAGAT-CGTCGACAT	Design primers
4740252	CAGCGCCACCGCCAGCGCCAGCGC	Design primers
4743694	ATCGCCGCCCTCGCCCTTGCCACCCTCGCCACCGGCGCCCACGCC	Design primers
4744250	GGGCTGTGGCTGTGGCTGGGGGTG	Design primers
4775933	GCCAGCGTCAGCGCCAGCGCCACC	Design primers
4792365	CGGCCTGGGCCTCGGGCTCAGCCT	Design primers
4792484	CCGACACGGACACCGCCACCGACC	Design primers
4860771	ATGGAATCGACGGAATCGATGGAATCG	Design primers
4870305	CAGCGAAAGCGACATCGACCGCGA	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

10529

TC-AC-GC-CC-AC-GC-GC-AC-GC-CC-AC-GC