Microsatellites /Tandem Repeats database

Genome: Brachyspira hyodysenteriae WA1

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
1476GAT-AAT-AAT-AAT-AAT-AAT-AAT-AATDesign primers
11805TTAATTTTATTTATAATTTTAATTDesign primers
12148TTAATTTTATTTATAATTTTAATTDesign primers
21887ATTAAATAATTTAATAATTAAGTADesign primers
32039AGAGAAGAAGGTATAAAAGAAGGTATAAAAGAAGGTDesign primers
141964AAAATATAAGAGATTATAAGAGAATATACGDesign primers
154862TTCAAATTAAAATTCTAATTTAAADesign primers
176156TTC-TTC-TTC-TTC-GTC-TTC-TTC-TTCDesign primers
226933AAAGAAAAAATAAGAGAAGAAAAGADesign primers
233635AATAATAAAATTATAAAATATTAADesign primers
242304ATATTA-ATATTA-ATTTTA-ATATTADesign primers
289147AA-AA-CA-TA-TA-AA-CA-TA-AA-AA-CA-TADesign primers
289678ACTTAATTAAAAGATTTAATTAAAGGATTTAATTAAAAADesign primers
292394TTTTATCATTTTATTATTTTTTCADesign primers
332902TAATTTTTATATATTTTTATTATTTTTTATTGATTATTATDesign primers
359439AA-AA-AT-AA-AT-AT-AA-AA-AC-AA-AA-AADesign primers
370537AAGAAAATAAGAAGATAAGAAAAGAAGAAAAGDesign primers
386220TAATAATAATAACAATAATAATAGDesign primers
386299AATAATCAGAATAATATTAATAATCAAAATAATATAAATAACCAAAACAATATTDesign primers
389543AAAGAAATAGAAAAAGCAAGAGAADesign primers
400774ATAAAGATAATAAAAATAATAAAGAAADesign primers
409396AAATATAAATAGAACTATTAATATDesign primers
415538AGTTT-AGTTT-AGTGT-TGTGT-TGTGT-TGTGT-TGTGT-TGTGT-TGTGT-TGTGT-TGTGT-TGTGT-TGTGT-TGTGT-TGTGT-TGTGT-TGTGT-TGTGT-TGTGT-TGTGT-TGTGT-TGTGT-TGTGT-TGTGT-TGTGTDesign primers
425746AAATTAAATGATATTAAAGTAAAATDesign primers
456033TATGGAAAATTTGGATAATAATAACAATAATTTGGATAATAATAACAATAATTTGGATAATAADesign primers
472066TATAATAAAATAGAAAATAATAAAADesign primers
483257AAAGAGATAGAGTAAGAGAAAGAGDesign primers
490189TAAAATAGAAGAAAATAATAAAAAADesign primers
511124TCTTTTTCTATTTCTTCTTCTATTDesign primers
542371AATTT-ATGTT-CTGTT-CTGTT-CTGTT-CTGTT-CTGTT-CTGTT-CTGTT-CTGTT-CTGTT-CTGTTDesign primers
565574AAACTAT-GAACAAC-CAACAAC-CAACAAC-CAACAAC-CAACAAC-CAACAAC-CAACAAC-CAACAACDesign primers
580400GAACCTAAAAAAGAAGAACCAGCAAAAGAAGAAGCTAAAACTGAADesign primers
602157ATAATATTTATAATACTTATAATATTTDesign primers
602700TTAAGATTAACATTAAAATTTAGADesign primers
604475AATAATAATATATAATAATTATTATTAATADesign primers
624857TTCTCTTTTTTTTCTTTTTTCTCTTCTDesign primers
654890ATAATAATATTAAAAATAATAATADesign primers
655105AAAACAGAAAAGACAGAAAAAATAGAAAAAGCAGAADesign primers
655526AATG-TCAC-TCAC-TCAC-TCAC-TCAC-TCAC-TCAC-TCAC-TCAC-TCAC-TCAC-TCAC-TCAC-TCAC-TCAC-TCAC-TCAC-TCAC-TCAC-TCAC-TCAC-TCAC-TCAC-TCAC-TCAC-TCAC-TCAC-TCAC-TCACDesign primers
683052TATT-ATTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTGDesign primers
687607ATATATTATAATATTATAAAATATADesign primers
687739TTAAGGA-CTGTTGA-TTGTTGA-TTGTTGA-TTGTTGA-TTGTTGA-TTGTTGA-TTGTTGA-TTGTTGA-TTGTTGA-TTGTTGA-TTGTTGA-TTGTTGA-TTGTTGA-TTGTTGA-TTGTTGA-TTGTTGA-TTGTTGADesign primers
690962ATATATTATAATATTATAAAATATADesign primers
691094TTAAGGA-CTGTTGA-CTGTTGA-CTGTTGA-CTGTTGA-CTGTTGA-CTGTTGA-CTGTTGA-CTGTTGA-CTGTTGA-CTGTTGA-CTGTTGA-CTGTTGA-CTGTTGA-CTGTTGADesign primers
705798ATGGAAGATATAATAGAAGAGATAATGGGTGATATADesign primers
711580AATTCTAGCAATTCTACCAATTCTACCDesign primers
718879AATATAATAATTTAATAATATACTDesign primers
729562TCTTTC-TTTTTC-TTTTTC-TTTTTC-TTTTTCDesign primers
747699ATAAAAATAATAATATAAATATAAAAAAAADesign primers
771840TATCTTTATTATTTTTATTAGCTTTATDesign primers
774843AAATAAAAATATAAACAAAAATACDesign primers
783496TTTTATAAAATGTTAAAAAATTATATAAATDesign primers
803566TTATATTAATTGATATTTATTTATTTTAATDesign primers
863698AAATAATAAAAAAATAATATAATADesign primers
904932TAATA-TAATA-TTATA-TATTA-TAAAADesign primers
915022AATATTAATAATAATATCAATAATDesign primers
915071AAAAATGAAAATAATAATATAAATDesign primers
915337TTTAAAATATTTAAAAGATTTAAAAAADesign primers
978713CAAATTAATAAAATTTAATATATATTAATADesign primers
978781ATCTA-TAACA-AGCCA-AGCCA-AGCCA-AGCCA-AGCCA-AGCCA-AGCCA-AGCCA-AGCCA-AGCCA-AGCCA-AGCCA-AGCCADesign primers
982448ACTA-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGCDesign primers
985734TTCTTTCTCTTTTTTCTCTTCATTCTCDesign primers
1005060AGAAGAAGGTAT-TAAAGAAGGTAT-TAAAGAAGGTATDesign primers
1019670ATATTTTTACTTATTTTTTCATATTTTTTADesign primers
1020293GTTTTTATC-TTTTTTATC-TTTTTTATCDesign primers
1021080CTTCTGCTTCTTCATCTGCTTTTGDesign primers
1022223CTTCTGCTTCTTCATCTGCTTTTGDesign primers
1075307TTATAAAATATTAATAAATTATTAATAAAAAATDesign primers
1085094ATTATTTTCAGTATTTTCATTACTTTCDesign primers
1104157AA-AA-AA-AA-TA-AA-AT-AA-AA-AT-AG-AA-ADesign primers
1131884TAAAAAATTAACAAATTTAAAAATDesign primers
1156615AT-AA-AT-AA-AT-AT-CC-AT-AA-AT-AT-AA-AA-AT-ATDesign primers
1166480ATTTTT-ATTTTT-ATTTAT-ATTTTCDesign primers
1176309AAATTAATAAAAGTAAATAAAAAATAATATDesign primers
1176429TTGATTATTTTTGATTGATTTTGATTGATTDesign primers
1198149TTTATCTTTATATTCATCTTTTTCDesign primers
1210264AAAAAAATAAAAAAGAAAATAATAAAGAAADesign primers
1228129TATTTTTATTTCTCTTTTTACTTTDesign primers
1231533TTTTTATAAATTTATATCAATTTTTATATTDesign primers
1240111AATATAATGAATAAAATAATTAATAATATAAATAATDesign primers
1242011TTTAG-TGCGG-TGCGG-TGCGG-TGCGG-TGCGG-TGCGG-TGCGG-TGCGGDesign primers
1245827TAATATAATAATATACTTATATAADesign primers
1280573AT-TT-AA-AA-AT-AT-TT-AA-CA-AT-AT-AT-AG-AA-ATDesign primers
1285028ATATAATTATAAAAATAAATAAAADesign primers
1291909TAATATTAATTTCAATATTGATATDesign primers
1295235TATAAAATAATATAAAAATATATATAATAADesign primers
1306744TATAATATCTTTTATTTTATCTTTAATAATATCTTCDesign primers
1307040TTCTATACCTTCTTTAATACCTTCCTCTTTACCTTCDesign primers
1315576TTTGATAATTTTTCATAATCTTTCATAAATDesign primers
1318801TATAAATATTAATATAATTGTAAADesign primers
1334086ATTTTA-ATTTTA-TTTTTA-ATTTTTDesign primers
1338682TATA-AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGCDesign primers
1344727AAAAGACAAAGAAAAAGTAAAAGADesign primers
1358898AA-AA-TA-AT-AA-TC-AA-TA-AT-AA-AA-TA-TA-AA-AADesign primers
1365294CAAAATCTAAATCATAATCATAATDesign primers
1368722CTTGTTTTTTTAGCAGGTGCTTTTTTAGCAGTAGCTTTTTTAGCADesign primers
1368784TGTTTTTTTAGCAGCTGGTTTTTTTGCAGATGCAGTTTTAGCAGCAGCTTTTTTAGCAGCTGGTTTCTTAGCAGCDesign primers
1386905TATTATTATTTTGATTATTATTTTDesign primers
1405171AAAACTAAAAAAGTAAAAAAGTAADesign primers
1412730AAAGCTGAGGCAGAGGCAAAAGCTAAAGCTGCCGCTGAAGCAAAAGCTAAAGCTGCTGCAGAGGCAAAAGCAAAAGCTGAGGCAGAGGCAAAAGCTDesign primers
1413923TTTTTTTATTTTATTTTATTTTATTDesign primers
1420414AATATTTATATTATTATTAGTATTDesign primers
1422504CACTATAACCGCTATAACAACTATAACDesign primers
1422646TTTTTATTTTTTTTATTTGTTTCTTDesign primers
1432092AT-TT-TT-CT-TT-TT-AA-TT-TT-AT-TT-CTDesign primers
1435594TATATTTATTTTGATATTTTTATTDesign primers
1442863TT-TT-TA-TT-AT-TT-TT-TA-TT-TA-TT-TA-TA-TT-TTDesign primers
1443507TATTTT-TATTTT-TATTAT-TTTTTT-TATTATDesign primers
1463343TGATGATAATGATGAAGAAGATGADesign primers
1488578TTTTTCCCCTTG-TTCTATACCTTG-TTCTATACCTTG-TTCTATACCTTG-TTCTATACCTTG-TTCTATACCTTG-TTCTATACCTTG-TTCTATACCTTGDesign primers
1506578AATATTAAAATTAATATTAATAATDesign primers
1514148TA-TT-TT-AT-AT-TT-TT-TT-AT-AT-TT-TT-TDesign primers
1533366TTATTTTTATTTAATTATTATTGTATTTTAATTDesign primers
1595719TATAATATTATATACAATAATATTATATATAATAADesign primers
1609831TTTATTTCATCTTCTTTTAGATTATCTTCTTTTATTAAATCTACTDesign primers
1637481ATCTTAAAAAATCTTTAGAAAACCTAAAAADesign primers
1641208TTTTTATTTATATATTTATTATTATTTTTCTTTTTCDesign primers
1646259TTTCCTTAGTTTCCTTATTTTCTTTAGDesign primers
1649981AA-AA-AA-TA-AA-AA-AA-AT-TA-TA-AA-AA-TA-TA-TADesign primers
1655712AATT-ATTT-AATT-AATT-AATT-AATTDesign primers
1683353CAATTTAATGGTAAAATTAATGGTAAAATTAATGGTDesign primers
1716763AAATTTTTAAATTTGTCAATTTTTDesign primers
1725329AATAGAAAAAGATATAGAAATAGTDesign primers
1735233CAAATAAT-AAAATAAT-AAAATAATDesign primers
1750279ATTTTATTATTTTAGTATTATATTDesign primers
1756249ATT-ATT-ATT-AAT-GTT-ATT-ATT-TTT-ATT-ATTDesign primers
1792226ATAATAAATAAAAATAAAAAATACTAGATADesign primers
1796571ATTTTTATTTGTATTATTATTTTGDesign primers
1807161AAATAAAATTAAATGATATAAAATTDesign primers
1813051TATTATTATCATTGTTATTATTTTDesign primers
1815384ATTAT-ATTAT-ACTAT-ATGAT-ACTAT-AATATDesign primers
1816360GTTTTGTAAATTTATTGTAAATTATTTGTAAATDesign primers
1841701TGGTTTTGGTGTTGGTGTTGGTTADesign primers
1848734TATAT-TATAT-TATTT-TATAA-TATAADesign primers
1880583TAATAAAAAAATAAAATGATAAAADesign primers
1912246TA-TT-AT-TT-TT-TA-TT-AT-AA-TT-TT-TT-AT-TT-TTDesign primers
1934289ATAAAGATAATAAAGACAATAAAGAAADesign primers
1939989TCG-TCA-TAA-TCA-TCT-TCA-TCG-TCA-TAA-TCA-TCG-TCG-TAG-TCA-TCA-TCA-TCG-TCADesign primers
1940052TCATCAAAATCATCATCGAAGTCATCGTCAAAGTCADesign primers
1940094TCATCATCGTAATCGTCGTCATCGTCATAGTCATCATCATAATCGDesign primers
1940223TCATCGTCATAATCATCTTCATCATCATAGTCATCADesign primers
1945892AT-TA-AA-AT-TA-AT-AT-TA-TA-AA-TA-AADesign primers
1952124TA-TA-GT-GT-TT-GT-TT-GT-TT-GT-TT-GT-TT-GT-TT-GT-TT-GT-TT-GT-TT-GT-TT-GT-TT-GT-TT-GT-TT-GTDesign primers
1958960AAAATAAAATTATAAATAAAAATGDesign primers
1960780AAAGTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTDesign primers
1963890ATTTAGG-CTTGTTG-CTTGTTG-CTTGTTG-CTTGTTG-CTTGTTG-CTTGTTG-CTTGTTG-CTTGTTGDesign primers
1981503ATATTTTAATTTATATTAATATACTATAATDesign primers
1987715TA-AA-AT-TA-TA-AA-AA-TT-TA-TA-AA-AA-AA-TA-TADesign primers
2013606ATATA-AAAGT-CAAGT-CAAGT-CAAGT-CAAGT-CAAGT-CAAGT-CAAGT-CAAGT-CAAGT-CAAGT-CAAGT-CAAGT-CAAGT-CAAGT-CAAGT-CAAGT-CAAGT-CAAGTDesign primers
2020767AAATATAGAAAATACAGAAGATATAGADesign primers
2051153TAATCAAAATATTATCAAAATATTATCAAAAAADesign primers
2070465TATATT-TATATT-GATATT-TTTATTDesign primers
2117155AACAAGATTTAACTAGATTTAAAAATATTTDesign primers
2136463TTTAATATTAATTCTAATTTTGATDesign primers
2161618TT-TT-AT-TC-TA-TT-AT-AT-TT-TT-TT-AT-ADesign primers
2195370AAAATATCAAATATAAATTATAAAGTATDesign primers
2198990TTAGCTTTTTTAGCTTCTATAGCTTTTDesign primers
2244267AGAAGGTATAAAAGAAGGTATAGTACAAGGTAAAAADesign primers
2244493TTATAATATTATTATATTATAAGADesign primers
2264421TTTTTTTATTTTTTATTATTGTTTTDesign primers
2264508ACAATAATAAATAATAATAATTAATAATAADesign primers
2271155TTATTTTATTATGTTATAATTTTADesign primers
2313122TTTTTTAAATTATTTTAATTTTTTTAAAATDesign primers
2315031TT-TA-TA-TT-CA-TA-TT-TA-TC-TT-TA-TADesign primers
2338179TTTATTATTATTTATTTATATTTCTTATTTDesign primers
2377606AA-TA-CA-AA-TA-AA-AA-TA-AA-AA-AA-CADesign primers
2381250TGGAGGTGTTGGAGGAGTAGGAGGTGTDesign primers
2410075AATTAATATTAAAATTCAAAATAADesign primers
2452603TTAATTTTTTATAGTTTTTTTTAATAATTTDesign primers
2457426AAAATGAATATGATAATGAAAATTDesign primers
2462839ATATAATACAATATAAGATAATATADesign primers
2529484ATTATTATTTATTGCTATTTATTATTATAADesign primers
2529555TGTCTTTAATAATGTCGTTAATATTTTTTTTAATAADesign primers
2542635TTTATATAAATTTATATTCACTTATATATADesign primers
2597523TCA-TTA-TAA-TTA-TTA-TTA-TTA-TTADesign primers
2602286TTGAAAATTTATTTGAAAATGTTTTTGAAAGTTTAADesign primers
2613013TA-TA-AT-AA-AA-TA-CC-AT-AA-AA-TA-TA-AA-TA-AADesign primers
2624989GCAGCAGTAGCAGCAGCTCCAGCADesign primers
2636492AAAAAATT-AAAAAATT-ACAAAATTDesign primers
2651644ATATTTACATATTTTCATAATTACDesign primers
2653298TCAGATATTTCAAATATTTCAAGTATTTCAAGTATTTCAAGTATTTCAAGTATTTCAAGTATTTCAAGTATTTCAAGTATTTCAAGTATTTCAAGTATTTCAAGTATTTCAAGTATTTCAAGTATTTCAAGTATTTCAAGTATTTCAAGTATTTCAAGTATTTCAAGTATTTCAAGTATTTCAAGTATTTCAAGTATTTCAAGTATTTCAAGTATTTCAAGTATTTCAAGTATTTCAAGTATTTCAAGTATTTCAAGTATTTCAAGTATTTCAAGTATTTCAAGTATTTCAAGTATTTCAAGTATTTCAAGTATTTCAAGTATTTCAAGTATTTCAAGTATTTCAAGTATTTCAAGTATTTCAAGTATTTCAAGTATTTCAAGTATTTCAAGTATTTCAAGTATTTCAAGTATTTCAAGTATTTCAAGTATTTCAAGTATTTCAAGTATTTCAAGTATTTCAAGTATTDesign primers
2656100AGTAAAGTACAGAAAAATAAAATAADesign primers
2670086TAATTT-TAATTT-TACTTT-TAATTADesign primers
2675598ATAATATATATATAATTTAAATATAATATTTTTDesign primers
2685532TAAAGAAAATAAAGAAAGTAATGAAAADesign primers
2711324TAATA-TAATG-CGATG-CGATG-CGATG-CGATG-CGATG-CGATG-CGATG-CGATG-CGATG-CGATG-CGATG-CGATG-CGATGDesign primers
2734730ATAAT-ATATT-AATAT-AATAT-TATADesign primers
2744932AAGTGATATTAAGTGCTATTAATAGATATTDesign primers
2757425TTTTATTTTTTTATATATTATGTTADesign primers
2761279TATAAAATAATATAAAAGAATAAAGAATAADesign primers
2761932ATCTTAATATTAATGTTAATCATADesign primers
2770987ATAATATTATAAAATTATATTATTDesign primers
2776364TATTATAGTATATTATAAAATATTATGTTADesign primers
2777608TATCTATATTTTATGAATATTTTATCTGAATTTDesign primers
2793669AAATAAAAGTAAAGATAAAAATATDesign primers
2800515AAAATAAAATTAATAATAAAAATATAAATADesign primers
2863646AAT-TAT-TAT-TAT-TAT-TAT-TAT-TATDesign primers
2898615TA-AT-AT-AT-GT-AT-TT-TT-AA-GA-TT-TA-TA-TT-TT-TT-AT-AT-CT-AT-AT-TT-TDesign primers
2912088AAT-TAT-ATT-TAT-AAT-AAT-AAT-TATDesign primers
2941323ATCAAAATAATCAAGATAATCAGAATADesign primers
2941364AATCAAAATAATCAAAACGATCAAAATDesign primers
2941395ATAATCAAAATAATCAGAACAATCAAADesign primers
2958931TTTTTCTTTTACTTCTTCTTTTACDesign primers
2974753TCTTTTTCTTCTTTCTCTTCTTTTTTTDesign primers
2988215TTAATAATTCTTCATTATTCTTGGTAATTCDesign primers

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