Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Deinococcus gobiensis I-0

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
42513	GTGGCTGGCCTGAAGGGGGCTGGCGTGAGGGGGGCTGGCCTGAAG	Design primers
57548	TCCTCGGCCCAGACCCCGGCGGCCCAGACCTCCTCGGCCCAGACG	Design primers
59233	GCGCAGGCGCGGGTGCAGGCGCTGGAGCAG	Design primers
93562	CTCGCCGCCCTGGCCGCCCACGCCGCC	Design primers
118016	GGCCGGAGCCGGAGCCGGGGCTGG	Design primers
118336	GCTGGTGCTGGCCCTGGTGCTGGG	Design primers
126428	CGAGGGCCGCAGCGGGGGCAGCAGTGAGGGGCGCAG	Design primers
129922	AGGGTGGCGACGGTGGCGAGGGCGGCG	Design primers
132046	ACCTGA-ACCTGA-TCCTGA-ACCCGA	Design primers
151525	CGCAGCAGCAGCCCCAGCCCCAGC	Design primers
162868	GCGGGCCGGGGCGGGCCGGGGCCGG	Design primers
302922	GGCAACGGCATCGGCAAGGGCAAG	Design primers
359532	GACCGCGGCGGCTACGGCGGCGGCGACCGTGGCGGC	Design primers
371704	CTGTCCCGCCGTCCCGCCGTCCCG	Design primers
394472	CGCAGCGGCAGCCCCAGCAGCAGC	Design primers
433492	GACGCCCGCGACCGGCACCCCGGCGACCGGGACGCCCGCTACGGA	Design primers
443238	GCAGCAGGAGCAGCCGCAGCAGCA	Design primers
448672	GGTCGGGGTGGGGGTCGGCGTCGG	Design primers
448946	GGCGTCGGGGTCGGGGTGGGGGTCGGCGTAGGGGTG	Design primers
460649	CCCGCCGCCGAAGTGCCGGCTGCTGAAGTGCCGGTGGCCGAAGTG	Design primers
499656	GGGCGCTGGCGGGCGCGGCCTGGCCCTGGC	Design primers
511613	CGGGGTGGGGGTCGGGGTGGGGGT	Design primers
530355	CTGGTTCTGATTCTGGTCCTGGTT	Design primers
537713	GGTGGCGATGGCGTTGGCGGTGTC	Design primers
539761	GCTGGCGGTGGCGCTGGCGCTGAC	Design primers
544923	CGGGGCCGGGCGGGGCCGGGCGGGG	Design primers
607676	CCCAGAGCGCCCTGAGCGCCCAGAGCG	Design primers
666170	CGCACCCGGACCCGCACGCGCCCC	Design primers
743843	GGGGGTCGGGGGATCGGGGGGCCG	Design primers
811235	CAGGCCCGCGAGGAGGCGCGCGAGCAGGCCCGCCTG	Design primers
860230	CGGCG-CTGCG-CGGCG-CGGCG-CTGCG	Design primers
864609	GGCCCTGGCCCCGGTCCTGGCCCT	Design primers
866024	GCCCTGCCCGGCCGTGACCTGACCT	Design primers
897309	CGGCCTCGGCGTCGGCCCCGGCCC	Design primers
928670	GGGCCGGGGCGGGGGCCGGCGCCG	Design primers
930507	CGCTGCCGGTGCCGGTGCCGCCGC	Design primers
931049	CGGGGTGGGGGTCGGGGCCGGGGC	Design primers
973617	CCGGACGACACCGGCCCGGACGACCCCAGTCCGGACAGCTCCGGC	Design primers
981436	TGTTCCTGATCCTGTTCGTGTTCT	Design primers
1006046	GTGGTCGGCGTGGTGGTCGTGGGCGTGGTGGTCGTGGGGGTGGTG	Design primers
1006113	CCGGGCCCTGGGGACCCTGGGGGCCCTGAGGACCCTGGGGGCCCTGGGGACCCT	Design primers
1018223	GCCGCTGCCCCTGCCGCCGCCGCG	Design primers
1027103	CGCCTGGGCCTGAGCCTGGGCCTG	Design primers
1027283	GGCCCGGGCGCGGGCCTGGGCCTG	Design primers
1063842	GCCTGGGGCTGGGCCTGGGCCTCG	Design primers
1080619	GGGCTGGACCGGCGCGGGCTGCATGGGCGCGGGGCGCACCGGCGC	Design primers
1095951	CTGAAGCTCCGCTCAAGCGCCGCTGAAGGTCCG	Design primers
1154129	CGC-CGC-CCC-CGC-CGC-CCC-CGC-CGC	Design primers
1158125	GGTGCCGGCCGTGCCGGCGGTGCCGGC	Design primers
1175759	TGACGGCGACGG-AAACGGCGACGG-AAACGGCGACGG	Design primers
1182917	GGGCCTGGGCGTGTGCCTGGGCAT	Design primers
1198235	CCGCCAAGGCCGCGCCGGCCAAAGCCGCGCCCGCCAAGCCCTCCC	Design primers
1204589	GTTCCAGCACCCGCGCCAGCACCCGTGCCAGCACCG	Design primers
1244975	CGACCC-GGACCC-GGACCC-TGACCC	Design primers
1291436	GACCTCGCCGCCCAGCTCCTCACCGCCCAGCACCTCGCCACTCAG	Design primers
1294815	CTGCTGCTGCCGCTGCTGCTGCCG	Design primers
1319027	CGACCACGACCGCGATCACGGCCA	Design primers
1347763	TGCCCAGCGCGATGCCCAGCACGTAGGCCAGCGCGA	Design primers
1387543	CGCCGCCGCGCCGCTGCGCCGCCT	Design primers
1399158	AGGCCGAGGCCCCGGCCGAGACCG	Design primers
1403440	GTCCCGGCCCGACCCCTCCCGGCCC	Design primers
1422588	TCGGTGCCGTCGATGCCGTCGGTGTCG	Design primers
1426431	CGGCGGTGGCGGCGGCGACGGCGG	Design primers
1497846	CTCAGACGGCCCAGACCCAGGCCGCCCAGACCCAGTCGGCCCAGA	Design primers
1516848	GCCCAGCCCCAGCCCCAGGCCCAC	Design primers
1551641	TCCAGC-CCCAGC-GCCAGC-GCCAGC	Design primers
1557155	TGCCCCTGCCCGTGCCGCTGCCCC	Design primers
1571051	GAGGCC-GAGGCC-GAGGTC-GAGGCC	Design primers
1573682	GGGGCCGGGGCAGAGGCCGGGGCG	Design primers
1699571	TGCGCGAGATCCGCGAGATGCACGAGA	Design primers
1702344	CCTGAGCCTGGGCCAGAGCCTGGG	Design primers
1726255	CGGCGTCGGTGTCGGGGTCGGCCT	Design primers
1764381	CCCAGCGCCAGCCCCAGGACCAGC	Design primers
1813114	CCTGAAGGCCTGAACGGCTGAAGG	Design primers
1850046	CCGATGCCCATGCCGATGCCCATGCCCATG	Design primers
1881487	GATCGTGATCGGCATCGTGATCCT	Design primers
1902070	TCCCGTTCC-CCCCGTTCC-CCCCGTTCC	Design primers
1921169	CGAGGTGGAGGTCGAGGTCGAGAT	Design primers
1930206	GCTCAGGCCCAGGCTGAGGCTCTG	Design primers
1931310	CAGCGGCAGCCGCAGCGCCAGCGT	Design primers
1953122	CGGCCTGCTCGGCCAGCTCGGCCTGCT	Design primers
2018332	CGTTGGGGGCCGCGTCGGGGGTGGCCGCGTCGGGGGTGGCCGCGT	Design primers
2054127	CC-GC-GC-CC-AC-GC-CT-GC-GC-CC-AC-GC	Design primers
2060946	GCCCTCTGTGCCCTCCGTGCCCTCTGT	Design primers
2102074	TCCGGC-CCCGGC-CCCGGC-CCCGGC	Design primers
2113721	AGCAGCAACAGCAGGAGCAGCGGC	Design primers
2191892	AGGCTCAGGCGCAGGGTCAGGCGC	Design primers
2228273	CGTGGCGGCGGGGGTGGTCGCGGCCGGGGTCGTCGCATCGGGGGT	Design primers
2239284	CTG-GTG-CCG-GTG-CTG-GGG-CTG-CTG-CTG-CTG	Design primers
2327458	CGTCGCCCAGCATGTCGCGCAGCACGTCGGCCGGCA	Design primers
2352459	GGCCCCGCCCCCGGCTCCGGCCTC	Design primers
2354607	CGGCGGCAGCGGCAGCGGAGGCGG	Design primers
2364967	TCCGTCTGCGTCTGGGCCGTCTGGGTCTGCGCGGTCTGGGTCTGG	Design primers
2396633	CATCAGCAGCAGCACCAGGATCAG	Design primers
2420147	GCTTCGGCTTCCGCTGCGGCTTCC	Design primers
2422730	CCCGTCGCCGCCCGGCGCCACTCGCCGCCG	Design primers
2429173	CGCGCCGCCCGCGCGCAGCCGGCTCGCCGCCAG	Design primers
2485047	GCAGGGCCAGGGGCACGGTCAGGG	Design primers
2507698	GGCCTGGGCGCTCAGGTCCTGCGCGCCCAGCCCCTGGGCGTTCAG	Design primers
2512199	CGCCCCGAGCGCCGCGAGCGCCCCGCG	Design primers
2515271	GCGGCCCGGCGCGGCGCGGCGCGGG	Design primers
2559105	GCCGGGCCAGGGCGGGCCGCGCCGC	Design primers
2603270	GGCGCTGGCGGCCCTGGCGGGGCTGGC	Design primers
2621383	TGCCGCCGCCGCTGCCGCTGCCGT	Design primers
2625061	GCCTGCGCCTGTACCTGCGCCTGT	Design primers
2625145	CCCGGTGGCCCCGGTCGCCGTGGCCCCGGCTCCGGTCGCCCCGCT	Design primers
2628177	CTGGCGCTGCGCCTGCTCGCGCTGGGTCTGCTGGCGCTGGGTCTG	Design primers
2660103	GCAGACGCAGCCTCAGACACAGACGCAGAC	Design primers
2663074	CGTCGCCGTCGGGGTCGCCGTCGC	Design primers
2683801	CAGGCCCAGCAGCAGCGCCAGCAGGAGGCCGAGCAG	Design primers
2684553	CAGGCCCAGCAGCAGCGCCAGCAGGAGGCCGAGCAG	Design primers
2699086	GAGGCGGCGGCGGTGGCGCAGGCG	Design primers
2718222	CTGGCCCGGTGTTGCCCGGTCCGGCGCGGT	Design primers
2808059	ACCCCGAACCCGACCCCCACCCAGACCCCCACGCCG	Design primers
2817099	CACGCGGGTCTCGCGGGTCTCGCGGGT	Design primers
2825989	GCAGGA-GCAGGA-GCATGA-GCAGGA-GCAGGG	Design primers
2840498	ATGCTGCTGGGCGCGCTGCTGGGCGTGCTGCTGGGG	Design primers
2886490	CCACGCCGGCCACTCCGGCCACCCCGG	Design primers
2903386	CGTGCCGCTGCCCGACATCCCACTGCCCGACATCCCGCTGCCGGA	Design primers
2915352	CGGGGCGGTGCCGGGCGGCGCGGGC	Design primers
2958462	GTGCTGGGGCTGCTGCTGGGGCTG	Design primers
2962299	GTCGTATCTCTGGTAGTGTCTCTGGTCGTGTCTCTG	Design primers
2980451	GCGCC-GCGCC-GCGCC-GGGCC-GCGTC	Design primers
2989072	CCGCCATCGCCACCGCGACCGTCA	Design primers
3002009	GGCACCGGGGTCACGGGCACAGGAGTCACGGGCATAGGAGTCACGGGCACAGGAGTCACAGGCACGGGGGTGACC	Design primers
3019017	GGGCCTGCT-GGGCCTGCT-GGGCCTGTT	Design primers
3048260	GGGAGTGGGGGGTGGGAAGTGGTGAGTG	Design primers
3050101	CCGGGCCAGGCCGGACCGGGCCGGA	Design primers
3066011	CGAAGCCCAGCTTCAGGAAACACAGCTTCAGGAAACACAGCTTCA	Design primers
3080860	CCGGGCCGCGCCGGTGCGGGTCGGG	Design primers
3087965	CGGCGGCGCTCGTCGCGGCGGCCCTCATCCCGGCGGCCCTCGAAGCGGCGGCGCTCGTCA	Design primers
3102996	GCGGCCCGGCGGCCCAGCGGCTCG	Design primers
3120438	CGACCGCGCCCACGCCTGCGCCCACGCCCGAGCCCA	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

42513

GTGGCTGGCCTGAAGGGGGCTGGCGTGAGGGGGGCTGGCCTGAAG