Microsatellites /Tandem Repeats database

Genome: Opitutus terrae PB90-1

Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
7395CACAGATGAATACAGATGGACACAGATCCADesign primers
12176CTCTCAACGCTCAACCCTCAACTCTCAADesign primers
13304TGCGCG-TGCGCG-TACGCG-TGCTCGDesign primers
46557GAAGAGGACGAGGAAGAAGACGAGGAATAGDesign primers
51050CCGCCTCTGCCTCCGCCACCGCCGDesign primers
101428CCTGCGCCAGCGCATGCGCCTGCGDesign primers
104865TCAACTCTCAGCTCTCAACTCTCAACTADesign primers
221322TCGTTC-TCGTTC-TCTTTC-TCATTCDesign primers
223520GTTCGGA-GTTCGGA-GTTTGGA-GTTCGGADesign primers
238772GAGGACGAGAACGAGGGCGAGAACDesign primers
248310GAGCTTAGAGCCTAGAGCTTAGCGCTTADesign primers
281655CGTCCA-CGTCCA-CGTTCA-CGTCCADesign primers
308837GAACCGCGTCAACCGCGTGAGCCGCGTDesign primers
315506CTCTCAA-CTCTCAA-CCCTCAA-CTCTCAG-CTCTCAADesign primers
319053GCTCTCC-GCTCTTC-GCTCTCC-GCTCTCC-GCTCTCC-GATCTCCDesign primers
366079CACCACCACCAGCAGCACGACCACDesign primers
368029CACAGATGAACACAGATGGACACAGATTGADesign primers
368085CATTTGTGTTCATTTGTGTCCATCTGTGGTDesign primers
405463GTTGAGAGTTGAGGGATGAGAGTTGAGADesign primers
463137ACGCCG-ATGCCG-ATGCCG-ATGCCGDesign primers
468822TTCTCTTTCCCTTTCTCGTTCTCTDesign primers
473137TTGGATTTTCGATTTTGGATTTTCGATTDesign primers
474698TGCGCCGCCGGCGCCGCCCGCGCCGCCDesign primers
479745AGTTGAG-AGTTGAG-GGTTGAG-CGTTGAGDesign primers
491080AGTTGAGGGTTGAGAGCTGAGGGTTGAGDesign primers
551929GCTGCTGTTGCTGCTGCGGCTGCCDesign primers
623635CTCTCAACTTTCAACCCTCAACTCTCAADesign primers
625834GCTTCACCGCCTCACCGTTTCACCDesign primers
861029GCGCGGCCGCCCGGCCGCGCGGTCDesign primers
882149CGACTCTCGACCCTCGACTCTCGACTCGDesign primers
893115GGCCACCGGCCACACGCCACCGGCCCCCDesign primers
923038GCGAGCGCGAGGGCCAGCGCGTGCDesign primers
926458CTCTCAACTCTCATCCCTCAACTCTCAADesign primers
954771TCCATCTGTGTTCATTTGTGTCCATCTGTGDesign primers
955601GTTGAGAGTTGAGTGATGAGAGTTGAGADesign primers
971087TTCTCTTACTCTTTCTCGTTCTCTDesign primers
971519GAAGGAGAACGAGAAAGAGAACGADesign primers
972505AGTTGAG-AGTTGAG-CGTTGAG-GGTTGAGDesign primers
982684AGCCCTCCC-TGCCCTCCC-TGCCCTCCCDesign primers
988410CTCGTTCTCGTAATCGTTCTCATTCTCGTTDesign primers
988466GAGAACGAGGACGAGAAAGAGAACGAGAACDesign primers
1025250GG-GC-GT-GG-GC-GC-GG-GG-GT-GG-GC-GCDesign primers
1058714GTTGAGAGTTGAAAGTTGAGGGTTGAGAGTTGGGADesign primers
1063413GCTGCTGCTCCTGCTGCCGCTGCCDesign primers
1177914ATCGTTCTCTTTCTCGTTCTCGTTCTCGTTCTCTCTDesign primers
1177994GAGAGA-ACGAGA-ACGAGA-ACGAGA-ACGAGA-ACGAGADesign primers
1236839CGGCGCTGGCGCCGTCGCCGGCGADesign primers
1351296AGGCGGTG-AGGCGGTG-AGGCAGTGDesign primers
1354848GGACGGTG-AGACGGTG-AGACGGTGDesign primers
1354900GCGAAGCGGTGAAGCGGTGAAGCGDesign primers
1355661ACGGTGAGACGGTGATGCGGTGAGDesign primers
1360157GTTGAGAGTTGAGGGATGAGAGTTGAGGDesign primers
1388010CGTTTTTGCGCTTTTTTGCGCCTCTTTGCGDesign primers
1412384CTCGTT-CTCGTT-CTCTTT-CTCTTT-CTCGTTDesign primers
1413505ACGAGAAGGAGAAAGAGAACGGGADesign primers
1607531CTCTCAACCCTCAACTCTCAACTCTCAADesign primers
1611261CTCGTTCTCGTAATCGTTCTCGTTDesign primers
1611360CTCTCAACTCTCATCCCTCAACTCTCAADesign primers
1649459ATTTTCGAGTTTCGAGTTTCGATTTTGGDesign primers
1699178CACAGATGGACACAGATAAACACAGATGGGDesign primers
1699231CCTCTGTGTTTATCTGTGTTCATCTGTGGTDesign primers
1717497TTTCTCGTTCTCTTTCTCGTTCTCDesign primers
1717581AGAGAACGAGAAAGAGAACGAGAADesign primers
1725590GTGTTGAGAGTTGAGTGTTGAGGGTTGADesign primers
1728109CATCTGTGTCCATTTGAGTCCATCTGTGGTDesign primers
1729918GAGTTGAGTGTTGAGAGATGAGAGTTGADesign primers
1730029AACGAGAACGATTACGAGAATGAGAACGATDesign primers
1731789GAGAGTTGAGGGTTGAGAGATGAGAGTTDesign primers
1731993GGAGAATGAGAACGAGAAAGAGAACGAGAADesign primers
1750970CAAGAGAACGAGAAAGAGAACGATTACGAGAACGAGDesign primers
1753338GGCTCTCGGCTCTGGACTCTCAGCTCTCDesign primers
1786153CGTTGAGAGTTGAGCGTTGAGAGTTGAGDesign primers
1808362CTCTCAGCTCTCAACCCTCAGCTCTCGGDesign primers
1812860CGCGACCGCGCGCGCGCGCGCGCAAACGCGDesign primers
1852167CTTTTTCCCGATTTTTCCCCGACTTTTTCCTGADesign primers
1876563CGCGAGCACGAGCCCGAGCACGAGDesign primers
1884647TGGCGCTGGCGGTGACGCTGGTGCTGCCGCDesign primers
1937633AGTTGAG-AGTTGAG-GGTTGAG-AGATGAGDesign primers
2016418AAAATCGAAATTCGAGAATCGAAAATCCDesign primers
2074436GCGGCGTCGGCGGCGGTGGAGGCGDesign primers
2076748GGCAGCGGTGGTGGCGGCGTTGGTGGCAGCCGTGGCDesign primers
2121831GGAGTTC-GGAGATC-GGAGTTC-GGAGTTC-GGAGTTCDesign primers
2160888GGAGCTGAGCGAAGCGGCGCGGATCDesign primers
2169583GGCGGCAGCGGCCGCGGCGGTGGCDesign primers
2206896GGCGTGGCCGTGGGCTTGGGCGTGDesign primers
2235178CTGGCG-CTGGCG-CTCGCG-CTCGCGDesign primers
2280230GGTTGAG-AGTTGAG-GGTTGAG-AGTTGAG-AGTTGAGDesign primers
2318465AGTTGAGAGATGAGGGTTGAGAGTTGAGDesign primers
2318494GTGGAGA-GATGAGA-GATGAGA-GATGAGA-AATGAGA-AATGAGA-GATGAGA-GATGAGA-GATGAGA-GATGAGA-GATGAGA-GATGAGA-GATGAGA-GATGAGA-GATGAGA-GATGAGA-GATGAGA-GATGAGA-GATGAGA-GATGAGA-GATGAGA-GATGAGA-GATGAGA-GATGAGA-GATGAGA-GATGAGA-GATGAGADesign primers
2346971GGTTGAGAGTTGAGGGTTGAGCGTTGAGDesign primers
2347022AGTTGAG-AGTTGAG-AGCTGAG-AGTTGAGDesign primers
2350286GGTTGAGAGTTGAGGGTTGAGAGTTGAGDesign primers
2370588TTTCGGATTTCGAAATTCGGATTTCGGADesign primers
2378343CGTTGAGAGTTGAGGGTTGAGAGTTGAGDesign primers
2390908GCCTACAGCCTAAAGCTTACAGCCTACTDesign primers
2399496CTCGTTCTCGTAATCGTTCTCGTTCTCGATDesign primers
2416990CCGATTCGATCAGATCCGACACGATDesign primers
2478896GCG-GCG-GCG-TCG-GCG-TCG-ACG-GCGDesign primers
2534862GAGGGTTGAGGATTGAGCGTTGAGGGATDesign primers
2538797GATTTTC-GATTTTC-GAATTTC-GAATTTCDesign primers
2573066GGAGAACGAGAAAGAGAAAGAGAACGAGAADesign primers
2578890GAGTTGAGCGTTGAGGGTTGAGAGTTGADesign primers
2586261GAGTTGAGAGCTGAGGGTTGAGAGCTGADesign primers
2594850CGATTTC-TGATTTC-CGATTTC-CGATTTCDesign primers
2594896ATCGAAAATCGAGATTCGAAAATCGAAADesign primers
2597176AGTTGAGGGTTGAGAGTTGAGGGTTGAGDesign primers
2598407GTTGAGAGTTGAGGGCTGAGAGTTGAGADesign primers
2598848GCTCTCA-ACTCTCA-ACTCTCA-ACTCTCADesign primers
2643417GAGTTGA-GAGTTGA-GGGTTGA-GAGTTGADesign primers
2643456AGTTGAGCGTTGAGGGTTGAGAGTTGAGDesign primers
2681064AACGCGGAGGACGCGGAGATCGCGGAGDesign primers
2681213GTTGAGAGTTGAGGGATGAGAGTTGAGADesign primers
2681268CGTTGAGAGTTGAGGGTTGAGAGTTGAGDesign primers
2683242AGTTGAG-AGTTGAG-AGTCGAG-AGTGGAGDesign primers
2683683AGCTGAG-AGCTGAG-AGTTGAG-AGCTGAGDesign primers
2683727GGCTCTG-GACTCTG-GACTCTG-GGCTCTGDesign primers
2688782CTCTTTCTCGTTCTCTTTCTCGTTDesign primers
2690002CTTTTTGTGCTTTCTGTGCTTTTTGTGDesign primers
2758794GCGAGCACGAGCGTGAGCGCCAGCDesign primers
2776625CCGAGGGCGGCCGCGGGAGGACGCGGGCGGDesign primers
2802080GCGGCGGATTCGACAGGCTCACCGCAGGCGGATTCGACAGGCTCACCACATGCGGATTCGACAAGCTCACCGDesign primers
2803169CGCGAGCGCGAGCTCGAGCGCGAADesign primers
2850024CACGAAACACACGAAAAACACGAAACADesign primers
2989734TCGTTC-TCGTTC-TCTTTC-TCGTTCDesign primers
3076724GAGTTGAGAGCTGAGAGTTGAGAGTTGADesign primers
3076793AACCCTCAACTCTCAACCCTCAACTCTCAACCTTCDesign primers
3083700CTG-CTG-CTG-TTG-CTG-CTG-TTG-CTGDesign primers
3083770TGC-TGC-TGC-TGT-TGT-TGC-TGC-TGCDesign primers
3087134CGTTTGGCGTTTGACGTCTGGAGTTTGGDesign primers
3126124GATCTGTGTCGATCGGTGTTCATCTGTGGCDesign primers
3225096CTCGTGCTCGGGTTCGTGCTCCTGDesign primers
3252202AGTTGAGAGCTGAGAGTTGAGAGCTGAGDesign primers
3300009GTTGAGAGTTGAGGGATGAGAGTTGAGADesign primers
3300119CTCAACTCTCAACACTCATCTCTCAACTDesign primers
3326044CACGGAACACACGGATCACACGGAAAADesign primers
3326172CGCAAAAGGCGCACAAGGCGCAAAACGDesign primers
3403544GACGTGGCCGTGGGCGTGGGCGTGDesign primers
3456819GAGTTGA-GAGTTGA-GGGTTGA-GAGTTGADesign primers
3481149CGAGCGCGAGGGCGCGCGCGATCGDesign primers
3550168GATTTTCGATTTTGGAATTTCGATTTTCDesign primers
3554116AGCACGTGCACGAGCACGGGCACGDesign primers
3595665ATTTTCGATTTTGGATTTTAGATTTTTGDesign primers
3620553GAGCACGAGCAGGAACACGAGCAGDesign primers
3686212CCCGCCCCGGACCGCCCCGCACCGCDesign primers
3755189TGGTGGCGCTCGTGGCGCTGCTGGCGCDesign primers
3821795GTTGAGAGTTGAGGGATGAGAGTTGAGADesign primers
3824196GTTGAGAGTTGAGGGATGAGAGTTGAGADesign primers
3866687GAGAGTT-GAGAGTT-GAGGGTT-GAGAGTTDesign primers
3871665ACGCGGAGGGCGCGGAGGACGCAGAGGDesign primers
3986189CTCTCAA-CTCTCAA-CACTCAA-CTCTCAADesign primers
4013956GCG-CCG-ACG-CCG-CCG-CCG-GCG-GCGDesign primers
4037946GTTGAGAGTTGAGGGATGAGACTTGAGADesign primers
4038173CTCTCAACCCTCAACTCTCATCTCTCAADesign primers
4049930GAGAGTT-GAGAGTT-GAGCGTT-GAGAGCTDesign primers
4104051TGGTCGGGCTGGTGCTCGCGCTGGTGGCCGGGCTCGDesign primers
4264763GAGGAAGAAGAAGAGGAGCAGGAADesign primers
4297492AGTAGCGAGTAGTGGGTAGCGAGTAGCGDesign primers
4352268GAGTTGAGAGCTGAGAGCTGAGGGTTGADesign primers
4352387CTCAACCCTCATCCCTCAACTCTCAACTDesign primers
4437861AGTTGAG-AGTTGAG-AGCTGAG-GGTTGAGDesign primers
4454118CTCAACTCTCAGCTCTCAACCCTCAACTDesign primers
4455370GCTCTCAACTCTCAGCTCTCAGCTCTCGDesign primers
4460678GCTCTCA-ACTCTCA-ACTCTCA-GCTCTCADesign primers
4467716CGGCGGCGCCGGCGGCGGCGGCGCDesign primers
4473610CACAGATGGACACGGATGAACACAGATCTADesign primers
4473885CGCTCAACTCTCAACCCTCAACTCTCAADesign primers
4479844ACCACAGATAAACACAGATGGACACAGATADesign primers
4480050CACAGATGGACACGGATGAACACAGATCTADesign primers
4480300CTCTCAA-CTCTCAA-CGCTCAA-CTCTCAADesign primers
4481527CCTGTCCACCGTTCACCGTCTCCTGTCCACTGTTTACCGTCGTCTGTCCACCGTCCCCCGCCTDesign primers
4481591CCGTCCACCGTCTACCGTCCCCTGTCCACCGTCCADesign primers
4483105CACAGATGAACACGGATGCACACGGATCAADesign primers
4483610CTCAACCCTCATCCCTCAACTCTCAACTDesign primers
4485153TGAGAGTTGAGGGTTGAGAGTTGAGAGTDesign primers
4487532GGGGACGGCGGACGGTGGACGGTGGACGDesign primers
4487829ACGGTGGACGGTAGACGGTGAGCGGTGGDesign primers
4487873CGGTTCCTCCTACGCCAAGCCTTCCTCCTACGCCAAGGCTTCCTCCTACGCCAADesign primers
4501300TCTCAACGCTCAACCCTCAACTCTCAACDesign primers
4508545CCCTCAACTCTCAACCCTCAACTCTCAADesign primers
4510618GTTGAGAGGTGAGAGTTGAGGGTTGAGADesign primers
4511476AGTCGATCCGAGGACGATCCGAGTTCGATCCGADesign primers
4555173CGCCGCTGCCGCCACCGCCGCCGCDesign primers
4563948AAACTCCAAACCCCAAACTCCAAACTCTDesign primers
4565546CCCTCAACTCTCAACCCTCAACTCTCAADesign primers
4570084TCTCTCAGCTCTGG-ACTCTCAGCTCTGG-ACTCTCAGCTCTCGDesign primers
4586687ACGAGAACGAGTAAGAGACCGAGAACGAGTDesign primers
4621640CCCTCAACTCTCAACCCTCAACTCTCAADesign primers
4628113CACGAAACACACGAAATACACGAAAAADesign primers
4628162TTTCGTGTGATTCGTGTGTTTCGTGGGDesign primers
4629068CTCAACTCTCAACCCTCATCTCTCAACCDesign primers
4637554TCGCCCGCGCCCTGGCCCTCGCGCDesign primers
4637987CTCAACTCTCAACCCTCATCTCTCAACCDesign primers
4640665CACTCAACCCTCAACTCTCAACTCTCAADesign primers
4724113CTCGTTCTCTTTCTCGTAATCGTTCTCGTTCTCCTTDesign primers
4730741CTCTCAA-CTCTCAA-CCCTCAA-CACTCAADesign primers
4748098ACTCCGAACTCAGAACTCCAAACCCCGAACTCCGTDesign primers
4749326TCGCCGCGCGTCGCCGCGAATCTCGGCGCGDesign primers
4755001TTCCGTGTGCTCCGTGTGTTCCGTGGGDesign primers
4822476GCCCAGAGCCCAGTGTCCAGAGCCCAGADesign primers
4822575GCTCTCA-ACTCTCA-GCTCTCA-GCTCTCADesign primers
4823257TCGTTCTCTTTCGCGTTCTCTTTCDesign primers
4823927AGCTCTC-AGCTCTC-AGCGCTC-AGCTCTCDesign primers
4858074CACCGTCCACCGCCCACCGCCCACCGTTDesign primers
4877056ACTCTCA-ACTCTCA-ACCCTCA-ACTCTCADesign primers
4878352CAGCTCTCAACTCTCAGCTCTCAGCTCTDesign primers
4913916GTGAAGCGGTGAAGCCGTGAAACGDesign primers
4914051TCACCGCTTCACCGTTTCACCGATDesign primers
4916859TCGTTC-TCGTTC-TCCTTC-CCGTTC-TCGTTC-TCGTTTDesign primers
4972570GCCAGCTGGCGCCAGCCGGCGCCAGCGGTCDesign primers
5082424CCGGCACCGCAGGCACCGCCGGCACGGDesign primers
5095899AGAGAACGAGAAAGAGAACGAGAADesign primers
5117790TTTCCATCTGTGTTCATCTGTGTCCATCTGDesign primers
5118877CTCTCAA-CTCTCAA-CGCTCAA-CTCTCAADesign primers
5130999AGGATAAGCGAAGATAAGTGCGGATCAGCGDesign primers
5146797GAACACAGATGGACACGGATGCACACAGATDesign primers
5147006CTTTGCGCCTGTTTACGCCTCTTTGCGGCTDesign primers
5194018GCAGCCGCAGCAGCCGCCGCGGCCDesign primers
5233887TTCTCGTTCTCTTTATCGTTCTCGTTCTCTDesign primers
5236376CTCAACTCTCAACCTTCAACTCTCAACTDesign primers
5246484CGCTCAACCCTCAACGCTCAACCCTCAADesign primers
5256899TTTCTC-CTCCTC-GTTCTC-TTTCTC-GTTCTC-GTTCTC-ATTCTC-TTTCTC-GTTCTCDesign primers
5257000GGAGAACGAGAAAGAGAACGAGAADesign primers
5259728GGCATCTGTGTGCATGTGTGTTCATCTGTGDesign primers
5318833TCAGCGGCAGCGTCAGCTTCAGCGDesign primers
5319717TCGTTC-TCGTTC-TCTTTC-TCTTTCDesign primers
5319795AGAGAACGAGAAAGAGAACGAGAADesign primers
5328107ATGATGATCATGATGGTGATGATCATGCTGDesign primers
5330288CGCTCACGCCCACGATCACGCTCGDesign primers
5361341CTCTCAA-CTCTCAA-CCCTCAA-CTCTCAADesign primers
5365737ACCACAGATGAACACACATGAACACAGATGDesign primers
5366126CGCGCTCGCGTTCGCGCTCGCGCTDesign primers
5374201TA-AC-CA-CA-GA-TG-AA-CA-CA-GA-TA-GA-CA-CA-GADesign primers
5374240GTTTCCATCTGTGTTCATCTGTGTCCATCTDesign primers
5394572AGTCGCTGTCGCAGTTGCAGGCGCDesign primers
5401336GCCGCGCTGCGCCGGGCCTCACCGCDesign primers
5434891CTCTCAACTCTCAGCCCTCAACTCTCAADesign primers
5449399TTTCGATTTTGGATTTTCGATTTTCGATDesign primers
5449836GTTGAGAGCTGAGAGTTGAGGGATGAGADesign primers
5449935CTCTCAACTCTGAACCCTCAACTCTCAADesign primers
5460083CTCAACTCTCAACCCTCATCTCTCAACTDesign primers
5501066CACCGCCACCACCGCCGCCGCCGCDesign primers
5504706GCGGCCGCGGCATCGGCCGCCGCCDesign primers
5508529GAGTTGAGAGATGAGGGTTGAGAGTTGADesign primers
5509770AGGGTTGAGAGTTGAGGGTTGAGAGTTGDesign primers
5509837CCTCTCAACTCTCAGCTCTCAACTCTCADesign primers
5518474GGTGGCGGTCGCGGTGGTGGTGGADesign primers
5519939AGAGAACGAGAACGACAACGAGAAAGAGAACGATAADesign primers
5522547TCATCAGCGTGCATCAGCGAAGATCAGCGTDesign primers
5537858TCCGCC-CCCGCC-TCCGCC-TCCGCCDesign primers
5551915CAACCCT-CAACTCT-CAACTCT-CAACTCTDesign primers
5573143CTCTCAA-CTCTCAA-CCCTCAA-CTCTCAADesign primers
5576198CACTCAACCCTCAACGCTCAACCCTCAADesign primers
5594828CTCTCAACTCTCATCCCTCAACTCTCAADesign primers
5625371GTGCCAGCGCGTGCCGCCGCCGGCCAGCGCDesign primers
5639622CGTCCGCCCGCCGGCCGCGCGCGGTCTGCCCGCDesign primers
5842168TCGTTC-TCTTTC-TCGTTC-TCGTTC-TCTTTCDesign primers
5866487TGCTGCTGCTGTTGTTGCTCCTGCDesign primers
5866534CGCCGCTTTGTCCGCGGCTGCTTTGTCTGCAGCCGCCTTGTCTGCCGCAGCCTTCTCCGCDesign primers
5866614CCTTTTCTGCCGCCGCTTTTTCAGCGGCCGCTTTCTCCGCCGCCGCCTTTTCGGACGCAGCCTTTTCCGCCGCCGDesign primers
5868188CG-AC-CG-CG-AA-CG-CG-AG-CG-CG-AG-CGDesign primers
5874595GTTGAGA-GTTGAGA-GCTGAGA-GTTGAGADesign primers
5905074ACTCTCAACCCTCAACTCTCAACCCTCADesign primers
5945125CCTCAACTCTCAACCCTCAACTCTCAACDesign primers

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