Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Alcanivorax dieselolei B5

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
185729	GTGGCGGTGGCCGTGGGGCTGGCG	Design primers
197248	CTGTCAACTGTCCACTGTTAACTGTCAA	Design primers
228529	GGCGCCGCCGCCGGGGCCGGCGGC	Design primers
246870	TGCCAGAGAAGGCGCTGCCTGAGACGACGCAGCCAGAGAATGCAC	Design primers
301541	ACTGTCAACTATCAACTGTCCACTGTAA	Design primers
452379	CAGCCCCAGCGCCAGCACCAGCGC	Design primers
503197	AGTTGACAATTGACAGTGGACAGTTGAC	Design primers
596652	CAGAACGGGGAGCGGAACGGAGAGCAGAGCGGGCAG	Design primers
667789	TTTCGTGC-CAGCGTGC-CAGCGTGC-CAGCGTGC-CAGCGTGC-CAGCGTGC	Design primers
684945	AGTTGACAGTTGATAGTGGACAGTTGAC	Design primers
685128	CTGTCAACTGTCCACTATCAACTGTCAA	Design primers
715110	AGCGTGT-TGCGTGT-TGCGTGT-TGCGTGT	Design primers
721176	TGTTTCAATAACACGGTTTCAATAACGCTGTTTTAATAACAA	Design primers
758665	TTGGTAATGAAAAGTTGGGTAACGAAAAGTTGGGTAACGAAGAGT	Design primers
869508	CTATCAACTGTCAACTATCAACTGTCAA	Design primers
870000	GGTGGAAAGGAGGGCGGTGGAAAGGAGGCGGGCGGCAAGAAGGGC	Design primers
895271	TGGCGCTGGCGTAGGCGCCGGCGC	Design primers
965201	AGTTGACAGTTGATAGTGGACAGTTGAC	Design primers
965360	CTGTCAACTGTCCACTATCAACTGTCAA	Design primers
968139	AGTTGACAGTTGATAGTGGACAGTTGAC	Design primers
968300	CTGTCAACTGTCCACTATCAACTGTCAA	Design primers
980475	AGTTGACAGTTGATAGTGGACAGTTGAC	Design primers
980599	CTGTCAACTGTCCACTATCAACTGTCAA	Design primers
1056289	CTGTCAACTGTCCACTATCAACTGTCCA	Design primers
1083817	CTGTCAACTGTCCACTATCAACTGTCAA	Design primers
1086114	AGTTGACAGTTGATAGTGGACAGTTGAC	Design primers
1086238	CTGTCAACTGTCCACTATCAACTGTCAA	Design primers
1097111	GGCTCCGGCTTCGGCTCGGGATCC	Design primers
1102461	TACGCAAT-CACGCAAT-CACGCAAT	Design primers
1105927	AGTTGACAGTTGATAGTGGACAGTTGAC	Design primers
1106098	CTGTCAACTGTCCACTATCAACTGTCAA	Design primers
1121659	GAAGAGCTGAGA-GAAGGGCTGACA-GAAGGGCTGACA-GAAGGGCTGAGA	Design primers
1145854	AGTTGACAGTTGATAGTGGACAGTTGAC	Design primers
1151684	TCCGGCTCGGGCTTCGGCTCCGGT	Design primers
1151726	TCGGGCTTGGGTTCCGGTTTCGGTTCGGGTTTGGGCTCCGGCTTGGGTTTGGGCTTTGGTTTCGGCTTCGGT	Design primers
1166222	CCACCACCAGCACCAGCACCGCCA	Design primers
1169827	TTGTATTGGCGTCGGTGTTGGTAGTGACGTCGGTGTTGGTAGTGGCGTCGATGT	Design primers
1189854	GCGCCAGCGCCCGGGCCAGCGCCA	Design primers
1195355	TTAGTGCCGTGAGTAGTGCCATGACTAGTGCGGTGA	Design primers
1240152	AGTTGACAGTTGATAGTGGACAGTTGAC	Design primers
1240313	CTGTCAACTGTCCACTATCAACTGTCAA	Design primers
1266573	GGCGGCGGCGGACGCGGCGGTGGC	Design primers
1277211	CTATTAACTGTTAACTATCAACTGTTAA	Design primers
1348794	TAGAGGGCCGAGTAGAGGGCCGAAGAGAGGACCGAG	Design primers
1480861	TGCTGCAACTGAGCTGCCGCAACTGAGCTGCCGGAACTGAGC	Design primers
1491224	TGGCGCGGGCGCTGGCCCTGGCGG	Design primers
1497569	AGTTGACAGTTGATAGTGGACAGTTGAC	Design primers
1501776	AGTTGACAGTTGATAGTGGACAGTTGAC	Design primers
1503214	CTGTCAACTGTCCACTATCAACTGTCAA	Design primers
1561664	GTCTTAT-GTTGCGT-GTTGCGT-GTTGCGT-GTTGCGT-GTTGCGT-GTTGCGT-GTTGCGT-GTTGCGT-GTTGCGT-GTTGCGT-GTTGCGT	Design primers
1582959	CGGCCTTCCTTGCGCGGACCTTCCTTGCGCGGGCCGTCCTTGTGC	Design primers
1626305	CGCTGCG-TGTTGCG-TGTTGCG-TGTTGCG-TGTTGCG-TGTTGCG	Design primers
1626821	TTACACG-CAACACG-CAACACG-CAACACG-CAACACG-CAACACG	Design primers
1643264	GCTTCGGCTTCCGCGTCGGCTTCC	Design primers
1648418	AGTTGACAGTTGATAGTGGACAGTTGAC	Design primers
1648597	CTGTCAACTGTCCACTATCAACTGTCAA	Design primers
1651508	GAACCTTC-GTGCCAGC-GTGCCAGC-GTGCCAGC-GTGCCAGC-GTGCCAGC-GTGCCAGC-GTGCCAGC-GTGCCAGC	Design primers
1653498	CTGTCAACTGTCCACTATCAACTGTCAA	Design primers
1685746	CAGTTGATAGTTGACAGTGGACAGTTGA	Design primers
1685948	CTGTCAACTGTCCACTGTCAACTATCAA	Design primers
1705765	AGTTGACAGTTGATAGTGGACAGTTGAC	Design primers
1788195	TACACGC-AACACGC-AACACGC-AACACGC	Design primers
1836604	TTTTAGTTTTTTTTATTATTTTTTCGTATT	Design primers
1930842	CTGTCAACTGTCCACTATCAACTGTCAA	Design primers
1946614	CTGTCAACTGTCCACTATCAACTGTCAA	Design primers
1949217	GTCGGACGTCTGACGTCAGACGTCCGAC	Design primers
1974112	GACAGTTGATAGTTGACAGTTGATAGTTGACAGTT	Design primers
1974203	CTGTCAACTGTCCACTATCAACTGTCAA	Design primers
1978209	AGTTGACAGTTGATAGTGGACAGTTGAC	Design primers
1984659	TTAGCGTGTCAGCGTGTTGGCGTG	Design primers
1989214	AGTTGACAGTTGATAGTGGACAGTTGAC	Design primers
2002254	GGGAGAGGGACAGGGAGAGGGTGA	Design primers
2003757	CTGTCAACTGTCCACTATCAACTGTCAA	Design primers
2026639	TAGTTGACAGTTGATAGTGGACAGTTGA	Design primers
2026817	TGTCAACTGTCCACTATCAACTGTCAAC	Design primers
2029481	GCCAGC-GCCAGC-ACCAGC-GCCAGA	Design primers
2037503	AGTTGACAGTTGATAGTGGACAGTTGAC	Design primers
2037681	CTGTCAACTGTCCACTATCAACTGTCAA	Design primers
2052793	AGTTGACAGTTGATAGTGGACAGTTGAC	Design primers
2052979	CTGTCAACTGTCCACTATCAACTGTCAA	Design primers
2075380	AGTTGACAGTTGATAGTGGACAGTTGAC	Design primers
2075514	CTGTCAACTGTCCACTATCAACTGTCCA	Design primers
2141588	GCGGCGATGGCGGCGGTGACGGCGGCGTCCATGGCG	Design primers
2241833	TGGGCCGGGCTTGGCTGGGACGGGC	Design primers
2317924	GTGGGTTGAGTGGGTTGCGTGGATTGA	Design primers
2389900	GTGCTGGCGGTGGTGGTGGCGCTGGTACTGGTGGTG	Design primers
2420971	CTTTTCTTCTCTTTACGTTTCTTCT	Design primers
2449623	TCTTTTGCGGAGGCA-TCTTTTAGGGAGGTA-TCTTTTAGGGAGGTA-TCTTTTAGGGAGGTA	Design primers
2454693	CATTGTGCCGGCCCGGAGACGCCGGGTGGTGCCGGCCCGGAGCCGCCGGGTGGTGCCGGCCCGGAGCCGCCG	Design primers
2540160	CAACACGCCAGCACGCTAACACGC	Design primers
2556754	GATAGTTGACAGTTGATAGTGGACAGTT	Design primers
2556940	CTGTCAACTGTCCACTATCAACTGTCAA	Design primers
2590741	GGGAGAGGGACAGGGAAAGGGTGA	Design primers
2630703	GATAGTTGACAGTTGATAGTGGACAGTT	Design primers
2630780	CTGTCAACTATCAACTGTCCACTGTCAA	Design primers
2689431	GCCGAC-GGCGAC-GGCGAC-GGCGAC	Design primers
2710588	ACCGGA-ACCGGA-GCCGGA-GCCGGA	Design primers
2729514	AAAGTACCATGG-AAAGCGCCATGG-AAAGCGCCATGG-AAAGCGCCATGG	Design primers
2736097	CTGTCAA-CTGTCAA-CTATCAA-CTGTCAA	Design primers
2738938	AGTTGACAGTTGATAGTGGACAGTTGAC	Design primers
2739113	CTGTCAACTGTCCACTATCAACTGTCAA	Design primers
2742223	CCGTCACCGTCGCGGTCATCGTCA	Design primers
2812544	GAACAGGAACTGGAGCAGGAAGAG	Design primers
2835957	GGGAAGAACCAAGGGCAAAACCAAGGGCAAAACCAA	Design primers
2878547	AGCCTTGTTCGAGGCCCTGTTCGAGGCCTTGTTCGA	Design primers
2905590	CTGTCAACTGTCCACTGTCAACTATCAA	Design primers
2922601	CGGGCTCGGGTTCCGGCTCGGGAT	Design primers
2931628	GCTCCGGTTCCGGCTTCGGTTCCG	Design primers
2933910	GCGTGCCAGCGTGCCGGCGTGCAAGCGTGCCA	Design primers
2939404	GATAGTTGACAGTTGATAGTGGACAGTT	Design primers
2940827	CTGTCAACTGTCCACTGTCAACTATCAA	Design primers
2946318	CTGTCAACTGTCCACTATCAACTGTCAA	Design primers
3016418	CTGTCAATTGTCAACTGTCCACTGTCAA	Design primers
3029506	GCCGCGGCCACGGCGGCGGCCGCC	Design primers
3077311	ATCGTGGACGGCGTTTCAGGCTGATCGTGGACGCCGTTTCAACGTGATCGTGGACGGCATGTCAAACTG	Design primers
3091149	GCAA-CTAA-CTAA-CTAA-CTAA-CTAA-CTAA-CTAA-CTAA	Design primers
3132849	AGTTGACAGTTGATAGTGGACAGTTGAC	Design primers
3133015	CTGTCAACTGTCCACTATCAACTGTCAC	Design primers
3159676	GCCCTGCTGGCCGCCCTGTTCGCCACCCTGCTCGCC	Design primers
3165112	TCTGGGCCTGGGTCTCGGCCTGGG	Design primers
3289496	AGTTGACAGTTGATAGTGGACAGTTGAC	Design primers
3289639	CTGTCAACTGTCCACTATCAACTGTCAA	Design primers
3328590	CAGTTCTGAGTCGG-CAGTTCTGAGTCGG-CGGTTCTAAGTCGG-CAGTTCCGAGTCGG	Design primers
3348004	CTCATTGCACTTCCCTCATTGCACTACCCTCATCGCACGTCC	Design primers
3367056	ATCTGGAACTGGCTCTGGATCAGG	Design primers
3407096	ATGGAGAGGATCATGGAGAGGACCATGGAGAGAACC	Design primers
3438260	CCACCCCCAGCCCCACCGGCACCC	Design primers
3445980	CCTTACTTGTTC-GGTTACTTGTTC-GGTTACTTGTTC	Design primers
3462048	CTCTGGTGATGGAAGGGCTCTGGTGATGGAAGGACTCTCATGATAGAAGGG	Design primers
3508534	GCTGCCGTTGCCGCTGGCGCCGCC	Design primers
3575794	CATTCCCCGAAAATACCCCGAATTTTCCCCGAA	Design primers
3595828	GGCTCCGGTTTCGGTTTCGGTTTCGGTTCCGGTTTT	Design primers
3595951	GGCTTCGGTTCC-GGCTTCGGTTCC-GGCTTAGGCTCC	Design primers
3601025	CACGCCGGCACGCTGGCACGCCGT	Design primers
3623990	ACACCCACACCCACGCCCACACCG	Design primers
3636531	TCAACTGTCAACTATCCACTGTCAACTG	Design primers
3648717	TAGCGTGT-AAGCGTGT-AAGCGTGT	Design primers
3648767	CTGTCAACTGTCCACTATCAACTGTCAA	Design primers
3652738	AGTTGACAGTTGATAGTGGACAGTTGAC	Design primers
3725609	CAGATCCAGTTCCATATCCAGGTC	Design primers
3729246	GGAACACG-CTGACACG-CTGACACG-CTGACACG-CTGACACG-CTGACACG	Design primers
3738345	CAATAAAGAAGGAATAAAGGAGCAATAAAGAGG	Design primers
3778953	AGCGTGT-TGCGTGT-TGCGTGT-TGCGTGT	Design primers
3804854	GCGCCAGCACCAGCGCCGCCGCCA	Design primers
3838749	CCCATGCCACCCATTCCACCCATGCCG	Design primers
3895090	CTTTTTCCCACTTCATCCCACTTTTCACCA	Design primers
3896659	TAGTTGACAGTTGATAGTGGACAGTTGA	Design primers
3896849	CTGTCAACTGTCCACTATCAACTGTCAA	Design primers
3904741	GCGTGCGCGGCGTGCGGGGCCTGCGCG	Design primers
3920607	ACCTGAAAAGACACTTAAAAAGACACCTGAAAAGCC	Design primers
3959019	CTGTCAACTGTCCACTGTCAATTGTCAA	Design primers
4069249	AATGGTTAGGAGAGCGGTTAGGAGAACGGCTAGGAG	Design primers
4079152	GCGTGTT-GCGTGTT-GCGTGCT-GCGTGTT	Design primers
4130595	CTGTCAACTGTCCACTATCAACTGTCAA	Design primers
4138827	GTCATC-GTCATC-GTCGTC-GTCATC	Design primers
4300165	AGTTGACAGTTGATAGTGGACAGTTGAC	Design primers
4358727	CCCACCCCGGAGCCAACTCCGGAGCCAACCCCGGAA	Design primers
4452811	CAGCAGCGGCAGCAGCAGGAGCAGGAGCAG	Design primers
4470614	CAACTGCAACGGGAACTGCAACGG	Design primers
4472173	CACCACCAGCACCGCCACCACCAC	Design primers
4474346	GGGAGAGGGACAGGGAGAGGGTGA	Design primers
4550927	GCATGAATCATGGCGGCATGGACCATGGGGATATGAACCATGGCG	Design primers
4587994	CAGTTGA-CAGTTGA-CAGTGGA-TAGTTGA	Design primers
4588043	CTGTCAACTTTCAACTGTCCACTGTCAA	Design primers
4620108	GTTGACAGTTGATAGTGGACAGTTGACA	Design primers
4620290	CACTGTCAACTGTCCACTATCAACTGTC	Design primers
4741571	GATAGTTGACAGTTGATAGTGGACAGTT	Design primers
4741753	CTGTCAACTGTCCACTATCAACTGTCAA	Design primers
4788001	TCGTCGGGGTTATCGGGATCATCCGGGTCATCGGGATTGTCCGGGTTATCGGGG	Design primers
4788133	CCGCCACCACCACCGCCACTGCCA	Design primers
4801135	GCTGGCACTGGCTCTGGCGGTGGC	Design primers
4804191	CACGACCACGATCACGCCCACGAT	Design primers
4835628	GCCCAG-CCCCAG-GCCCAG-GCCCAG	Design primers
4835799	CTCCCTCTACAGCACGTCCCTCTACAAAACGTCCTTCTACAGCAC	Design primers
4907754	CGGGCTCGGGTTCCGGCTGGGGCT	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

185729

GTGGCGGTGGCCGTGGGGCTGGCG