Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Bordetella petrii

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
20483	TTTGCCCATATCTTTGCCGGTATCTTTGCCCATATCGTTGCCCATATA	Design primers
106548	TCGGCGGCGGGTTTGGCGGAGGCGGCGGCTTTGGCGGCGGCGGCGGTTTTGGCG	Design primers
106603	CGGCGGCGGCCGCAGCGGCGGTGGCGGCGC	Design primers
133822	GACCAGGAACAGGCCCAGGAACAG	Design primers
152493	GGGCCGGGGCGGAGGCCGGAGCCG	Design primers
209246	GGCGCTGCCGCTGACGCTGGCGCC	Design primers
361270	TCTGACACCTGGCAGT-AGCGACACCTGGCAGT-AGCGACACCTGGCAGT	Design primers
361724	TGACACCTGGCTGTAGCGACACCTGTCGGTAGCGACACCTGGCCGTAG	Design primers
441791	GTGGGCGGCCGGATCGGCGGCCGGGTTGGCGGCCGA	Design primers
502657	CGACCCCCCGCAAACCC-GACCCCCCCGCAAACCC-GACCCCCCCGCAAACCC	Design primers
566611	TCCGCCCCGCACCGCCCCGCGCCGC	Design primers
604068	GGGCTGGTGCTGGCGCTGGCGCTG	Design primers
635345	ACCGACGCAGAAATCGACGCAGAAGGCGACGCAGAA	Design primers
638999	GGCAGCCTTTTTAGCGGCAGGCTTCTTGGCGGCAGCCTTCTTGGCGGCAGGCTTCTTCGCAGCAGCCTTCTTCGC	Design primers
639146	CGCCTTCTTGACCGCTTTCTTGACGGCCTTCTTGGC	Design primers
639333	GTCTTCTTCACTGCCGGCTTCTTGGCTGCCGTTTTCTTCACGGCG	Design primers
639432	ACGGCCTTCTTGGCCGGGGCTTTCTTGGCCGCGGCCTTCTTGGCG	Design primers
661300	GCGGCA-GGGGCA-GGGGCA-GGGGCA	Design primers
704228	GGCCGCTGCCGCGGCCGGGGTCGC	Design primers
721753	GGGGGCGGCGGCGGGGGCGGGGGA	Design primers
733633	TTTTCTCGGCGGCGGCTTTCTCCGCCGCGGCCTTCTCGGCGGCCG	Design primers
733679	TTTTTCAGCCGCGGCTTTTTCGGCAGCGGCCTTCTCAGCCGCCGC	Design primers
733751	CTTCTCGGCGGCCGCTTTTTCGGCCGCCGCCTTTTCCGCAGCCGCCTTTTCGGCCGCCGCTTTTTCGGCGGCGGC	Design primers
733827	TTTTCAGCAGCGGCTTTTTCGGCGGCCGCTTTTTCAGCCGCGGCT	Design primers
734151	GGCTCGGGTTCGGGCTTGGGCTCG	Design primers
794087	CCCGCCCGGCCGCGCGCCGCGCCGC	Design primers
836631	CGCCGGCGCCGCGGCCGGCGCGGG	Design primers
911783	GGCGGCGGCGGAGTCGGCGCCGGC	Design primers
921304	TTGC-TTGA-TTGG-TTGT-TTGT-TTGT-TTGT-TTGT-TTGT-TTGT-TTGT-TTGT	Design primers
934073	CACAGCCCGCGCCACAGCCCGCACCGCAGCCCGCCC	Design primers
970854	ATGGCGTGTAATTG-CGGGCGTGTAATTG-CGGGCGTGTAATTG-CGGGCGTGTAATTG	Design primers
1001156	GACCGACAGGCCCGACAGTACCGACAG	Design primers
1053880	TTGTCACCTGGTTGTCGCTTGGTTGTCCCCAGG	Design primers
1054026	AAGGGA-CAGGGA-GAGGGA-CAGGGA-CAGGGA	Design primers
1339569	GTTTTGCTTAAG-CTTTTGCTTAAG-CTTTTGCTTATG	Design primers
1401406	CGATGCCGATGGCGGTGCCGATGC	Design primers
1416744	AACGGC-AACGGC-AATGGC-AATGGC	Design primers
1687792	GGCGGCGCCGGCGACGGCCGCGGC	Design primers
1693964	TTGCCG-TTGCCG-CTACCG-TTGCCG-CTACCG-TTGCCG-TTGCCG-TTGCCA	Design primers
1768299	TGGCGC-TGGCGC-TTGCGC-TGACGC	Design primers
1789635	CCGACCTGACCCAACCCGCCCCGCC	Design primers
1808213	GTGCTCAACCGCCTGCGCAACCGCGTGGACAACCGC	Design primers
1817434	GACACCTGGGGAGCAGTCCGCACCTGGGGGGCAGTCCGCACCTGGGGAGCAGCC	Design primers
1822635	AGCTGTAGCGGT-GACTGTGGCTGT-AGCTGTGGCTGT-AGCTGTAGCTGT-AGCTGT	Design primers
1822708	GGTGGCTGTGGGTGGCTGTAGCTGGCTGTA	Design primers
1822954	CCCTTCATTTCCGTCCCCGTCACGTCCGTCCCGTTCACGTCCGTC	Design primers
1843952	GCGGGCGCAGGCCCGGGCGCGGGCTCGGGC	Design primers
1857500	CGCGGC-CGCGGC-CGAGGC-CGCGGT	Design primers
1859136	ACGGCCACGGCACCGGCCACGGCG	Design primers
1990193	AGCACTCACCGACGCAAAGCATTCGCCGACGCGAAGCACTCGCCAAAGCAA	Design primers
2017893	GGCGGT-GGCGGT-GGCGCT-GGCGGC	Design primers
2074224	TCGAGGCGGCGCTCGAAGCCGCGCTCGATGCGGTGC	Design primers
2079604	CAGCCATGGCGGCCATGGCCGCCATGG	Design primers
2092877	CGGGCCGCGCGGGGCAGGGCCTGGC	Design primers
2124774	GGCGCTGGCGCGGGGGCTGGCGCC	Design primers
2157872	CCAAGGCCAAAGCGAAGGCCAAAG	Design primers
2203681	CGAACCGGCCGCCGAACCCGCCGCCGAACCCGTCGC	Design primers
2208803	GGCGGCGGCGGCGGCCGCGGCGGG	Design primers
2244936	GCCGGGCCGGCGGCGGCCAGGGCGGCGCCGGCCAGGGCGGCGGCG	Design primers
2301033	GCCGGCGCCGACGCCGCCGCCAGC	Design primers
2321483	GCGCAGCCGCGCAGGCGCGCCGCC	Design primers
2329412	CCAGGCCCTGGCCCAGCCGCAGGC	Design primers
2356101	GCGCCGCGCTGAGCCGCGCGCCGCC	Design primers
2375789	GTTGGGCAGATTTC-GTTGGACAGGTTTC-GTTGGACAGGTTTC-GTTGGACAGATTTC	Design primers
2431476	TTGACGTCCCGAAGCGCTGACGTCCTGAAGCGCTGACGTCCTGAAGTG	Design primers
2451664	GGGCCTGGCCGGGGCGCGCCGGGCA	Design primers
2463944	GATTCTTGATCTGGCGGTTCTTGGCCTGGCGATGCTTGGCCTGGC	Design primers
2508137	ACCTTCACGTACGTTCACGTACGTTCAGGT	Design primers
2511994	CATTCCCTTTCCCATTTCAATTCC	Design primers
2515930	GCTGGTGCCGGTGCTGGTGCTGGC	Design primers
2568584	CGCGCAGCGCCACGCCGCGGCCCGCCGCGC	Design primers
2576220	GAT-GCC-GAC-GCC-GCT-GCC-GCT-GCC	Design primers
2580516	CCCGCCCCGGCCCCTGCC-CCGGCCCCGGCCCCTGCC-CCGGCCCCTGCCCCGGCC-CCGGCC	Design primers
2587393	GCCTGGCCAACCACGCCCCGG-CTCTGGCCAACCACGCCCCGG-CTCTGGCCAACCATGCTCCGG	Design primers
2592643	CGAAAGACGGCATGAAAAAGGACGGCATGAAGAAAGACGGGATGTCCCATGACGGCATGAAGAAAGACGCCATGTCCCACGACGGCATGA	Design primers
2621089	TCGGCGCCCTCGGCGGCCTCGGCGCCT	Design primers
2631142	CCAGGACGACCAGTACGATCAGGACGA	Design primers
2636076	CGAGGTAAGCCAGGTAACGCAGGTAAGACAGGTAACGCAGGTAAGACAGGTAAC	Design primers
2636223	ACACCTGCCAGACACCTGGCAAATACCTGGCAAATACCTGGCAAATACCTGGCAAATACCTGGCAAATACCTGCCAGACACCAGTCAG	Design primers
2654849	GGCCCGCCTGACCCGCCTGGCCGGCCT	Design primers
2655689	GGCGCGCCGCGGCGTCGCGCAGCGCGGTGC	Design primers
2686293	GGCGCGGCGCCCGGCGGCACGGGGGCCGGCGGCACGGCGCCGGGC	Design primers
2687873	AGCGCCAGGGCCAGCCCCAGCACC	Design primers
2698003	AGTTCGGTCTGGTCC-GATCCGGTCTGGTCC-GATCCGGTCTGGTCC-GATCCGGTCTGGTCC	Design primers
2702753	GACGCTATGCGGC-GACGTGATGCGGC-GACGTGATGCGGC-GGCGTTATGCGGC	Design primers
2709863	CGCCGACCCCGACGCCGCCGACGA	Design primers
2711579	TTAA-TTAA-TTAA-ATAA-TTAA-TTAA	Design primers
2713360	CCAGCCTCTGCCCGCCCAACCTCTGCCACCCCGCCCTCTGCCGGC	Design primers
2718651	CCAGACACCTGGGAAGCAAACACCTGGGAAGCGGACACCAGGGAAGCAAACACCTGGGAA	Design primers
2718845	CCAGACACCTGGGAAGCAAACACCTGGGAAGCGGACACCAGGGAAGCAGACACCTGGGAAACAAACACCTGGGAA	Design primers
2737373	AAGTGCGCCCACCAAGCGCGTCCACCAAGTGCGCCCACC	Design primers
2748375	CCGGCGATTCAGATGTCTGACTCCTGGCAATTCAGGCGTCTGACTCCCGGCGATTCAGGCGTCTGACTC	Design primers
2765538	TCCACTTCTGGTTTACTTCTGGTTTACTTCTGG	Design primers
2775611	CG-GC-GC-GG-GC-GC-TG-GC-GC-CC-GC-GC	Design primers
2828147	TTGGGC-TTTGGC-TTTGGC-TTCGGC	Design primers
2828225	GGCTCGGGTTCGGGCTCAGGCTCG	Design primers
2880450	GCGCAGGCGCTGGCTCAGGCGCAG	Design primers
2931583	CCGGCGCCGGGGCCTGCGCCGGCT	Design primers
2954095	CGCCGGCCGCTGCATCGACCGCTGCTGCATCGACCGCTGCTGCAT	Design primers
2954172	ACCGCTGCGGCATCGACCGCCGCGGCACCGACTGCCGCGGCACCGACTGCCGCTGCATCGACCGCTGCGGCATCGACCGCTGCGGCATCGACCGCTGTGGCATCG	Design primers
2990658	CCTGCTGCACCGGTACTGCCTGCCGCACCGGTACTGCCTGCCGCACCGGCAGTGCCCGCCGCACCGGTAGTGCCTGCTGCACCGGTAGTGCCTGCTGCACCGGTACTGCCTGCTGCACCGGCAGTGCCCGCCGCACCGGTAGTGCCCGTTGCACCGGTAGTGCCCGCCGCACCGGTAGTG	Design primers
2990839	CTGCCGCACCTGCCGGACCTGCCGCAC	Design primers
2996026	GATGGCGGTGGCGATGGTGATGGT	Design primers
3020768	CGGTGGTGGTGGCGCTGGCGGTGCTGGTGGCCGTGG	Design primers
3027033	CCGGCCGCCCGGCGGCCGGGCCGC	Design primers
3040249	TGAAAGTGGCGTGTGAAAGCGACGTGTGAAAGCGGCGTC	Design primers
3061633	CGCTTC-GGCTTC-GGCTTC-CGCTTC	Design primers
3074315	CAGGTGTCACAGGCTGGTGTCGCAGGCAGGTGTCGCAGGCTGGTGTCACAGGCAGGTGTCGCAGGCTGGTGTCACAGGCTGGTGTCACAGG	Design primers
3075718	CCTGGCGAAGCGCCTGGCAATGCGCCTGGCAATGCGCCTGGCAATGCGCCTGGCAAAGCC	Design primers
3184036	CGGCCACGGCGGCCGCGGCGGCCATGG	Design primers
3197301	ACTGACCTGCCCGCGAATCGACCTACCCGCGAATCGACCTGCCCGCGA	Design primers
3218372	GCCCAGCAG-GCCCAGCAG-GCCCAGCTG	Design primers
3229202	GCCCGCGGCAGGCCGCCGCAACCCGCGGCC	Design primers
3297131	GCTGGCTTGGCGCCACCCGGCTTGGCGCCCCCGGCCTTGGCGCCA	Design primers
3334420	TCAGACACCTGACATGGCCTGACACCTGACATGAGCTGGCACCTGACATGGCCTGACACCTGACATGAGCTGGCACCTGACATGG	Design primers
3391951	CCCCACCACCCGCCGCACCACCTGCCGCACCACCCG	Design primers
3400039	CGGCACGAACAGCAGCTGCACGAACGACAGCTGCAAGAACAACAG	Design primers
3400252	CGGCACGAACAGCAGCTGCAAGAACAGCAGCGGCAAGAACGACAGCGGCAAGAACGACAG	Design primers
3427881	CGCCCAAGCATTGCCCAGGCATTGCCCAGGCAT	Design primers
3427920	ATGCATTGCCCAAACATTGCCCAAACATTGCCCAGGCATTGCCCAGGCATTGCCA	Design primers
3536641	CTGCTGCCGCTGCTGGTGCTGTTG	Design primers
3545154	CGCGGCCGCCGCCGTGGCCGCCGC	Design primers
3559813	GCCCGCGCGCGCGCCCTCGCCCGC	Design primers
3564619	GCGGCGGCGGCGGTGGCGGCAGCG	Design primers
3573762	TGGGGCGGTTCGGGCGGTTCGGGCGGT	Design primers
3630541	CCCTGAA-CCCTGAA-CCTTGAA-CCCTGAC	Design primers
3639472	CCTGATGACAAAGCCCCGTATGACAAAACCCCGTATGACAAAGCC	Design primers
3648872	CGTCGGCCTCGGCTTCGGCCTCGG	Design primers
3668498	CCATGCCCGCGCCGTCGAGCCCCGCGCCGTCGAGCCCCGCGCCGT	Design primers
3691368	CCGACTACG-CCGACTACG-CCGGCTACG	Design primers
3748524	ACTCCCGCGCTATTT-GCACCTGCGCTATTT-GCACCTGCGCTATTT-GCACCTGCGCTATTT-GCACCTGCGCTATTT	Design primers
3751350	CCGCGCCGGCGCCGGCGCCCACGC	Design primers
3776350	GAGACCGCCGCCAAAGACAGCCGCCAAAGACAGCCGCCA	Design primers
3776553	AGACCGCCGCCAAAGACAGCCGCCGAAGACAGCCGCCAA	Design primers
3783251	TGAGTTCACGCGCACTGAATCCATGCGCACTGAATCCATGCGCAC	Design primers
3808247	CGCGCCCTGCA-ACCGCCCTGCA-ACCGCCCTGCA	Design primers
3877781	GTCCAG-GTCCAG-CTCCAG-GCCCAG	Design primers
3881117	GCCGGTGTCGCTTCGGCAGTTTTCGCTTCGGCAGTTTTCGCTTCG	Design primers
3892422	CCGACGCCGCCTGACGCAGCCTGACGCGGC	Design primers
3908041	GCCTATCCGGTCAGGTGTCAGGCTCCCTATCCAGCCAGGTGTCAGGCTCCCTACCCAGCCAGGTGTCAGGCTCCCTACCCAGCCAGGTGTCAGGCT	Design primers
3908593	CAGCAGACGGCAGGCTTCCTTTTCGCCAGGCGTCAGGCTTCCTTTTCGCCAGGCGTCAGGCTTCCTTTT	Design primers
3909528	CGGCAGGCTTCCTTTTCGCCAGGCGTCAGTCTTCCTTTTCGCCAGGCGTCAGTCTTCCTTTTTGTCAGG	Design primers
4016708	GCCTGAGCCGTTGCCTGAACCGCTGCCTGAGTCGTT	Design primers
4054748	CAGGCGCAGGTGCTGGCGCAGGCC	Design primers
4069766	CC-GC-TC-CC-GC-CC-CC-GC-TC-CC-GC-CC	Design primers
4130364	GGCTGTGAACCGGCTGGGATCCGGCCGTGACCC	Design primers
4148166	CGGCGGCAT-GGGCGGCAT-GGGCGGCAT	Design primers
4170373	GGCCAGGCCCAGGGCCTGGGCCTG	Design primers
4172422	CGCGGGCGCGGCGGCGGGCGCTGGCGCGGG	Design primers
4172500	TCGTCCTCTTCGTCTTCGTCTTCGTCGTCTTCTTCG	Design primers
4200265	CTGCCGCCG-CTGCCGCCG-CCGCCGCCG	Design primers
4200672	GCT-GCC-GCC-GTT-GCC-GCC-GCC-GCC-GCC	Design primers
4200876	GTC-GCC-GCC-GTT-GCC-GCC-GCC-GCC-GCC	Design primers
4231296	AAAGGCAGCCAGTTAAAAGGAAGCCAACTAAAAGGCAACCAGCCA	Design primers
4234734	GACAGCCCGAGGAAGGCCCGAGGAAGGCCCGAG	Design primers
4272977	TCTTCGCCTTCGTCTACGTCTTCA	Design primers
4386120	CCGGGGCGGGCCGGGGCGGGCTGGG	Design primers
4396422	GCCGGCCCCGCCGGACCCGCCGCCCCC	Design primers
4396550	CGC-CGC-CGT-CGC-CTC-CGC-CGC-CCC-CGC-CGC	Design primers
4440816	CGGCCTGGGCCTCGGCCAGGGCCT	Design primers
4441404	CTCGCCGAT-TTCGCCGAT-TTCGCCGAT	Design primers
4681490	GCCACGCTG-GCCACGCTG-GCCGCGCTG	Design primers
4705734	ACCTGACCTGG-CACTGACCTGG-CACTGACCTGG	Design primers
4705768	ATCTCCGCAGGTGTCT-GGCTCCGCAGGTGTCT-GGCTCCGCAGGTGCCT	Design primers
4721417	CGGCGC-TGGCGC-TGGCGC-TGGCGC	Design primers
4761733	GGCGCCCGGCAGACACCTGTGGGGCTCGTCAGACAACTGTGGGGGTCGTCAGACACCTGT	Design primers
4771030	CAGCGCTGATCTAGCGCTGGTCCAGTGCTGATG	Design primers
4771100	GATGGTGCAGT-GCTGGTGCTGT-GCTGGTGCTGT-GCTGATGCAGT	Design primers
4895148	GCGCAAACGCAAGCGTAAGCGCAT	Design primers
4921574	GCGGCGGCGCCGGCGCCGGCCGCG	Design primers
4943977	ACTCCACCCGCAACGACGCCACCAGCAACTGCGCCACCAGCAACG	Design primers
5004619	CAGCGCGAACACCACCACGAACACCAGCACGAACAG	Design primers
5011695	CGCGGCGGCGGCCACGGCCGCGCC	Design primers
5023884	TCTCGTCAGGTGTCTGGTCAGGTGTCTGGCCAGGTGTCTCGTCAGGAG	Design primers
5024570	CAGGTGTCTGGCTCCG-CAGGTGTCTGGCTCCG-CAGGTGCCTGACACCG	Design primers
5039352	GCCAGGGTATTGCGAGGGAATTGCCGGGATATTGCGAGGGAATTGCCAGGATGTT	Design primers
5039598	AACCCTTACGCCGCGGATACCCTTGCGTCGCGGATACCCTTGCGCCGCAGA	Design primers
5039907	AACCCTTACGCCGTGGATACCCTTGCGCCGTGGATACCCTTGCGCCGCGGATACCCTTGCGCCGCGGA	Design primers
5042638	TCGGGCTCGGCCTCGGGGTCGGGC	Design primers
5056650	TCGTGGTCATGGTCGTGATCATGG	Design primers
5058105	ACCTGGACCTCGGCCTGGACCTGC	Design primers
5063792	CACGATCACGACCATGATCACGACCACGAA	Design primers
5070350	GGCGCGGCGTCGCGCTGCGCGACGC	Design primers
5106954	CTGGCGCTGGCCCTGACGCTGGCC	Design primers
5140053	CGCACG-GGCACG-GGCACG-GGCACG-GGCACG	Design primers
5144520	GTACCCCTTAGTTCGCCTTAGTACCCCTTG	Design primers
5178563	CGCGCGCGCGGGCCCGCGCGCGCT	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

20483

TTTGCCCATATCTTTGCCGGTATCTTTGCCCATATCGTTGCCCATATA