Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Burkholderia gladioli BSR3

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
30906	CCG-GCA-CCA-GCA-GCG-GCA-GCG-GCA	Design primers
31359	CCTGCG-CCTGCG-CGTGCG-CCAGCG	Design primers
73061	GCGGCTTGTCGTGGCTTATCGCGACGTGTC	Design primers
116018	ACGCCG-ACCACG-ACCACG-ACCACG-ACCACG-ACCACG-ACCACG-ACCACG	Design primers
148190	GTCGAGCAGCAAGACAAGCAGCAAGACGAGCAACAA	Design primers
157299	GGCCGAGCT-GGTCGAGCT-GGTCGAGCT-GGTCGAGCT	Design primers
172774	CGGCAACGGCGGCAATGGTGGCAACGGCGGTAACGG	Design primers
181495	TGCCGGTTCCGGTTCCGGTGGCGG	Design primers
184071	GGCGGCGGCTTCGGCGGTGGTTTCGGCGGCGGCTCG	Design primers
184884	GGCGCCGGGGCCGGCGCCGGCGGC	Design primers
185452	GGCCTCGCAATC-GGCCTCGCAATC-GGCCTCGTTATC	Design primers
187239	GGCGGCGGCAACGGCTTCGGCAGCGGCAATGGTTTCGGTGGCGGCAGCGGCTTA	Design primers
190404	GGCGGCTAACAGAAGCGGCTGACAGAGGCGGCTAACAGAGGCCGCTAACAGA	Design primers
197527	CGGCGCGGTGCGCCGCAGCGTGGCG	Design primers
224253	GCACAAGGAAGCGCACAAGGACGTCCATAAGGAAGC	Design primers
228719	GAATCCGGCCG-CGATCCGGCCG-CGATCCGGCCG-CGATCCGGCCG-CGATCCGGCCG	Design primers
229470	GCGGCGGCGGCGACGGCGGCAGCG	Design primers
280313	CATCGCCATCGGGATCGCGATCGC	Design primers
286371	CGCCGCGGCCGCCGGCGCGGCCGC	Design primers
340530	CGGCGTGACGCTCGGCGAGGCGCTCGGCGAGGCGCT	Design primers
385467	GCG-GCG-GCG-GGG-GCG-GAG-GAG-GCG-GCG-GCG	Design primers
390244	CCGGAAGCG-ACGGAAGCG-ACGGAAGCG	Design primers
390272	CGGAGGCGA-CGGAGGCGA-CGGAGGCGA-CGGAGGCGA-CGGAGGCGA-CGGAGGCGA-CGGAGGCGA	Design primers
417386	ACCCGGGCCGGCCCGCGCCGACCCGCGCCC	Design primers
477250	GGTGGTGCTGGTGGTGGCGGTGGC	Design primers
519423	CGATGCCCCCGATGCCCTCGATGACCC	Design primers
533429	AG-CG-CG-AG-CC-CG-AG-CG-CC-CG-CG-CG	Design primers
555413	GATCGGCGAGATGGGCGAGGTCGGCGA	Design primers
584068	CGGCGGCGACGGCGGCCGCGGCGG	Design primers
599880	GCACCGGCGAAGAAGGCAGCCGTGAAGAAGGTCGCGGCGAAGAAG	Design primers
599975	AGCAGCGAAGAAGGTTGCAGCGAAGAAGGTCGCGGTGAAGAAGGTTGCCGCGAAGAAGGC	Design primers
600149	ACCGGCGAAGAAGGCAGCGGTGAAGAAGGTTGCCGCGAAGAAGGC	Design primers
600214	CTGCCAAGAAGGCTGCGCCGGCGAAGAAGGCCGCGCCCGCCAAGAAGGCTGCCCCTGCCAAGAAGGCTGCAG	Design primers
616340	GCCTTCGACGCCGCCTTCGAGACCGCCTGCGGCGCC	Design primers
619823	AAGCGCGATTCACGCGTGATTCAAGCGTGATTC	Design primers
627325	GCGCGCCGCGTCGCGGCGCAGCGCG	Design primers
695431	CGGTGG-CGGTGG-CGCTGG-CGGCGG	Design primers
698531	GCCGGCCGCTGCCGCACGCTGCCGGCCACC	Design primers
728508	GGCGG-GGCGG-GGGGG-CGCGG-GCCGG	Design primers
755275	GGCGCCGCCGCCGGTGCCGGCGCG	Design primers
764015	GCCGGCACGGGCCGGCCCTGGCTGGCGCGG	Design primers
822295	CGCGGCTTCCGCCTTGGCGGCCGCCGCCTTCTCGGCCTCGGCCTT	Design primers
901998	CTGAAGCCCTGAAGCTCCGAAGCC	Design primers
920953	GGCACGCCGGGCAAGCCGAGCACGCCG	Design primers
947647	TTC-CTC-TTC-GTC-TTC-TTC-TTC-CTC	Design primers
992686	CGCCGCC-CGCTGCC-CGCTGCC-CGCCGCC	Design primers
1065459	GCTGGAGCAGGAGCTCGAGCTGGA	Design primers
1117047	GCCGACCACGCCGAACACGCCGACCGC	Design primers
1118396	GCGAGCTGCGGCGCGCCGCGGCGCGCGGCG	Design primers
1129324	AACGGCATGAGCGGCATGAACGGCAAG	Design primers
1131065	AGGGCAGCGCATGGCAGAGCTGGGC	Design primers
1134230	GGCGGCAGGCGGCAGCAGGCGGCGGCGAGC	Design primers
1166336	GCTTCGGCTTCCGCTGCGGCTTCC	Design primers
1195442	GTGCGACGTGCGCGACGTGTGCGACGT	Design primers
1245820	GCGGCGGCGCCGGCGGTGCCGGCG	Design primers
1293785	GCCGCCGCCGCGACCGCCGCCGGC	Design primers
1297389	CGCCACGGCCACCGCCACCGTCAC	Design primers
1383636	AAGCATGCAGAGAAGCATGTCGAGAAGCAGGCAGAG	Design primers
1410172	TCCTTG-CCATCG-CCATCG-CCATCG-CCATCG-CCATCG-CCATCG-CCATCG-CCATCG	Design primers
1410582	GCCGGGCTGGCCCGGGGCGGGCCTG	Design primers
1437206	AAGGGAACGAAGACA-AGCCGAACGAAGACA-AGCCGAACGAAGACA-AGCCGAACGAAGACA-AGCCGAACGAAGACA-AGCCGAACGAAGACA-AGCCGAACGAAGACA	Design primers
1442434	CGCGTCTTACCCACGCCTTACCCGCGCCTTATC	Design primers
1481716	ATCCTGTTCTTCATCTCGTTCTTCATCCAGTTCGTC	Design primers
1491312	CGAGACCGAGGCCGAGATCGAGGC	Design primers
1511762	AGGTCG-AGGTCG-ATGTCG-TGGTCG	Design primers
1533295	GCGGCGCGGACCGGCGCGACGCGCC	Design primers
1558183	CGGATCGCG-GGGATCGCG-GGGATCGCG	Design primers
1588794	TGCCAT-TGGCAT-TGGCAT-TGGCAT-TGGCAT	Design primers
1786827	TGGCCGCGCTCGCCGCGCTCGCCGCGCTGGCCGGGC	Design primers
1793972	CGCTCGGTTGCCGGCTCGGTTACCGGCTCAGTTGCC	Design primers
1828555	CCGCGCCAC-GCCCACCAC-GCCCACCAC-GCCCACCAC-GCCCACCAC-GCCCACCAC-GCCCACCAC-GCCCACCAC	Design primers
1830563	CGGCGCGGGCGCGGGCGCCGGCAC	Design primers
1833398	GCGGCGCGCCGCGTCGCCGCGCGGC	Design primers
1870061	GCCTCGCGCTTTC-GTCTGGCGCTTTC-GTCTTGCGCTTTC-GTCTTGCGCTTTC-GTCTTGCGCTTTC	Design primers
1870439	GCCGCACCGCTGCACCGCCGCGCC	Design primers
1883923	GGCGGCCGCGGCGGCGGTGCCGGC	Design primers
1968167	GGGTCGTGCCTGGATGGTGCCTGGCTCGTGCCC	Design primers
1996773	GGCCCGCCGGTCCGCCGGCCCGGC	Design primers
2025614	CGGCAACGCCAACGGTAACGGCAA	Design primers
2028724	CAGCAGGCTGCCGCGCAGCAGGCCGCGGCCGAGCAGGAAGCCGCG	Design primers
2029575	GGTCGAGGGCGAGGTCGGCGTCGA	Design primers
2063650	TGCAACTGCAGCAGCAACTGCAGC	Design primers
2068717	GCCGCCGCGGCCGCCACCGCCGCC	Design primers
2133834	CCGAGCCCCAGCCCCAGCCCGAAC	Design primers
2146109	CGCGCTGATCGCGATGATCGCGCTGTT	Design primers
2167863	AGGGCGAAGGCGAGGGCGAGGGCG	Design primers
2181166	GCGGCGGCGGCGTCGGCGGCCGCG	Design primers
2206798	TGCTTCCGAAAAGCTTCCCAAATACTTCCGAAA	Design primers
2210515	GAGGCGGG-AAGGCGGG-AAGGCGGG	Design primers
2216864	GCGGCGCGAGGCGAGGGCGGGCTGAGGCGAGGGCGGCCTGAGGCGAGG	Design primers
2261938	GCCGG-GCAGG-GCCGA-GCCGA-TCCGG	Design primers
2265025	CGAGCAGCACCAGCAGCACGATCAGCA	Design primers
2270265	GCTCGCGCTTGCGCACGCGCTCGA	Design primers
2298157	GGCAGGAGCG-GGGTGGAGCG-GGGTGGAGCG-GGGTGGAGCG	Design primers
2344597	GGAAGGCGGGCAGGCGGGGAGGCGGGGAGGCG	Design primers
2427668	CGCCCTCGACCTCGGCCTCGCCCT	Design primers
2444742	GCACCGCCACCGGCCCCGTCACCG	Design primers
2464063	CCAGGCCGCCCAGCCCGCCCAGCCCGC	Design primers
2473073	AGCCGG-TGCCGG-TGCCGG-TGCCGG-TGCCGG	Design primers
2476303	CGGCCG-TGGCCG-TGGCCG-TGGCCG	Design primers
2502225	CCGCACCCGAACCCGCTCCCGCGC	Design primers
2513543	GGCCGGCGCGGGGCGGCGCAGGAAGGCGCG	Design primers
2524992	GCGACACCAGCAGCAGCACCAGCAGCGCGACCAGCA	Design primers
2528193	CGTCGCTGCCCTCGCTGCCCTCGCTGC	Design primers
2530972	TACGGCGGCGGATATGGCGGTGGATATGGCGGCGGC	Design primers
2554944	CC-CA-CC-CC-CA-TC-CC-CG-CC-CG-CA-CC	Design primers
2593939	GCGAG-GCGCG-GCGAT-GCGAT-TCGAG	Design primers
2699721	TCGGCTACGACGGCTACGTCGGCTGCG	Design primers
2800193	TTGCTCGTC-GTGCTCGTC-GTGCTCGTC	Design primers
2820386	CCGCTGCACCGCGGCACCGGTGCA	Design primers
2847559	GGCCGCGTTGTCGGCGGCGTTATCGGCCGCGTCGAC	Design primers
2948333	CGCCCAGGCTGCCCAGGCCGCCCAGGT	Design primers
3004515	GGCGGGGAATTGCAGGGAATTGCGTGGAATGGCGGGGAAA	Design primers
3055519	ACGAATGCGACGAATACGACGAATGCG	Design primers
3058430	GTTCGTGCTCTAGCTGCGTGCTCTAGCTGCGTGCTCTAG	Design primers
3064367	CCCGCTTCACGCTGTCTCACCTCACGCTGTCTCACCTCACGCTGT	Design primers
3066625	CGGCTTGTCGTCGCTGGCTTGTCGTTGCCGGCTTGCCGTCGG	Design primers
3136074	CGTCCCAA-CGTCCCAA-TGTCCCAA	Design primers
3136188	CTTGGGACGTTGGGACATTGGGAC	Design primers
3205052	GGCCCGGCGCGGCCATGCCCCGCCC	Design primers
3238252	GCCACC-GCCACC-GCCGCC-GCCACC	Design primers
3253096	TATTCGTCCTATTCGTCTTATTCGCCC	Design primers
3255004	GCGCCCGCT-GCGCCCGCT-GCGCCCGAT	Design primers
3264265	GCC-GCC-GCC-TCC-ACC-GCC-ACC-GCC	Design primers
3274748	CCCCTGCCGCCCTGCCCCCCCGCC	Design primers
3286058	AGCGGCGCGAGCCGCGCGAGCAGCGCG	Design primers
3398085	CCC-CTC-GCC-GCC-GCC-CCC-GCC-GCC-TCC-GCC-CCC-GCC-GCC-CCC-GCC	Design primers
3503992	CGGCAATGGCGGCGGCTGGCATGGCAACGGCGGCGGTTGGCACGGCGGCGGCGGTGGCTGGCA	Design primers
3561316	CAG-CAC-CAC-CAC-CAG-CAG-CAG-CAC	Design primers
3662757	CGTCGACGCCGACCTCGATGTCGA	Design primers
3703094	GCGGAAGTGGAAGCGAAATCGGAA	Design primers
3729490	GCTCGGCGCGGCGCGGCTCGGCTGG	Design primers
3742867	CAGGAACTGGTCGGCCAGGCCCTGGTCGACCAGGATCCCGTCGGC	Design primers
3845420	CACGATGAAGTCCTCGATGAAGTCCTCCATGAAGTC	Design primers
3854044	GCG-GCG-GCG-GGG-GCG-GCG-GGG-GCG-GCG-GGG-GCG-GCG-GCG-GCG	Design primers
3879445	TTTTCATGGC-CTTTCATGGC-CTTTCAAGGC	Design primers
3887024	TTACCCGACCTTATCCGCCCTTGCCCGACA	Design primers
3929031	CTCGCATTACATCCGTTGCATTACATCCGCCGCATTACATCC	Design primers
3958149	TCGTCGTCGTCCGCGTCGTCGGCG	Design primers
3992279	CCG-CCG-CCG-CTG-CCG-CTG-CCG-CCG	Design primers
4038900	CGCCGTCGCGGTGGCCGTCGCCGTCGCCGG	Design primers
4061561	CGC-CGC-GGC-CGC-GGC-GGC-AGC-CGC-GGC	Design primers
4087785	CACCGGCCGCACCACCGGCGACACCACCGGCGACAC	Design primers
4090051	GCCCGTGCCGCCGGTGCCACCCGTGCC	Design primers
4107229	CGCAGCGCGGCGCCGCGCGGCGCAC	Design primers
4117835	CGCACCCGCAGCCGCGCCCGCAGC	Design primers
4158501	GCCGGCATC-GCCGGCATC-GCCGGCTTC	Design primers
4205887	CTGATGCG-GTGATGCG-GTGATGCG	Design primers
4221601	GCCGCGCTCGCCGCGCTGGTCGCGCTC	Design primers
4261664	TTATCGATAATTTATCGATAAATTATTGATGAT	Design primers
4262175	CGCCGCGTCGCACCGCGCCGCGCCT	Design primers
4281616	CCGCCGCGAATCTTGCCGCGAATCTCGCCGCGAATC	Design primers
4285096	GCCTGCGCGTGCGCCTGGCCCTGC	Design primers
4294884	GCCGGCGCGGGCGCCTGCGCCTGC	Design primers
4316136	CCATGACCACGGCGACCATGCGCACTGCGATCACGACCACGGCCA	Design primers
4319876	GCG-CCG-GCG-CTG-CCG-CCG-GCG-CCG	Design primers
4323435	CGCCGCCCCCGCCGCCGGCGCCCC	Design primers
4408616	TCGGCC-ACGGCC-TCGGCC-TGGGCC	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

30906

CCG-GCA-CCA-GCA-GCG-GCA-GCG-GCA