Microsatellites /Tandem Repeats database

Genome: Kocuria rhizophila DC2201

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
72302GGGC-GGGC-TGGC-GGGC-TGGC-GGGCDesign primers
73334CAACGG-CGACGG-CGACGG-CGACGGDesign primers
132143CCG-CGG-CGG-CCG-CGG-CCG-CGG-CGG-CGGDesign primers
204751CGACCACGGCCACGCCCACGAGCADesign primers
221639CCCACGGCTCGCACGGCTCCCACGGCTDesign primers
250509CGGCTGCGCCGACTGCGCCGACTGCGCDesign primers
285101CCGTCGACC-CGCACGACC-CGCACGACC-CGCACGACC-CGCACGACC-CGCACGACCDesign primers
331049GGTGGTGGG-GTTGGTGGG-GTTGGTGGG-GTTGGTGGGDesign primers
331474CCAGCACCACCTGCACCAGCAGCACCADesign primers
373922CATTCCTCGGGCCCATCCCTCCGGCCCATCCCTCCGGCCDesign primers
392934GCCGAGGCGTCGGGATCCGAGGCCTCGTGAGCCGAGGCGCGGGGADesign primers
414852GGCCA-GGCCC-GGCCC-GCCCA-GGCCCDesign primers
430107GCGGCGTCGGGGGTGCGAGCGGCGTCGGGGGTGGGAGCAACGTCGGGGGCGCGADesign primers
456511CCGTGGCCATGGCGGTGGCCCTGGDesign primers
470017GTCCGGGTCGGGGTCCGTGTCCGADesign primers
489477CCGCGTCCGTGTCCGCGGCCGCGGDesign primers
536797GTGCCGCGGGAATCGGTGCCCTGTGAATCGGTGCCGCGGAAATTGGTGCCTCGGGAATCGDesign primers
559787GCCCACGTCCACGCCCATGTCCACDesign primers
684547TCGCAACGAGCGCGGTGGCCGCAACGAGCGCGGTTCGCGCAACGACCGCGGCGGDesign primers
688266GTGGCCGCGGCCGTGCCCGGGGCCDesign primers
689002GACCCCGG-ACACCCGG-ACACCCGG-ACACCCGG-ACACCCGG-ACACCCGG-ACACCCGG-ACACCCGGDesign primers
719980CCGCGCACCCCGCCGTGAACCCCGTCGCGCGCCCCGDesign primers
747739GCCGGGGCCGGCGGCGGGGCCTGGDesign primers
776451CAGGGACACCGGGGACACCAGGGCCACDesign primers
859938CGACCCGTCCCGTCCCGGCCCGATCDesign primers
885868CCGCGGCCGTGGCCGAGGGCGCGGDesign primers
917553GG-GG-CG-CG-TG-GG-CG-CG-GG-GG-AG-CGDesign primers
952777CGCCCCCGCCGTGGCCCCCGCCGAAGCCGCCGCCGTDesign primers
1017825TCAGGGCTACGGCACGCAGGGCCACGGAACCCAGGGGTACGGCAACCAGGGCTACGGCGCDesign primers
1028727CGGCGCCCGCGCGCCGCACGCGCGGGGCCCGCCDesign primers
1103800CAGCAGCACCAGCAGGAGCAGCACDesign primers
1168073GGCGCCTTTCTGGCGCGGTTCTGGCCCCGTTCTDesign primers
1169857GCCCGGGCCCGTGCTGCCCGGGCCTGTGGTGCCCGGCCCGGTCCTDesign primers
1236661CGGCCGCCGCCGTGGCCGAGGCCGDesign primers
1310411CGAGGCCGAAGCCGAGGGCGAGGADesign primers
1353076CGGCGGCCGCGGCGTCGGCGGTGGDesign primers
1365003GCACGGCGA-GCACGGCGA-GCACGGCCADesign primers
1400150GAGCCGGGCCGTGACGGGCCGGGCCGGGCADesign primers
1446599CCGCGGCGCCCGCGGCCCCCTCGGCGCDesign primers
1464268CTTGTCCTTGCCGTTGTCCTCGTCDesign primers
1506492CACGGCCACCGCCTCGGCCACGGCCACGCCDesign primers
1531018TGATCCTGAGGCCCCCTGATCCTGAGGCCCCATGATCCGGAGGCGCACDesign primers
1556499ACC-ACG-AGC-ACG-ACC-ACC-ACC-ACCDesign primers
1563535GTG-GTG-CTG-GTG-CTG-GTG-CTG-GTG-CTG-GTGDesign primers
1573476CGTCGTCGTCATCGTCGTCGTAGTCGTCCTCGTCGADesign primers
1573516GTCCTCGTCCACGGCCTCGTCGTCDesign primers
1573549GTCGTCGTCATCGTCGTCCTCGTCGTAGTCDesign primers
1638876CGTTCGGCG-GGTTCGGCG-GGTTCGGCGDesign primers
1670566CAGGAAGTCCGGGAAGTCCAGGGAGTCDesign primers
1745873CGGCGGTCGTCCCGCCTGTCGTCCCGTCGGTCGTCCCGTCGGTCGTCGDesign primers
1762140ACGTCC-ACGGCC-ACGGCC-ACGACCDesign primers
1798218TCAGAACGCTGGGTGCTCGGAACTCCGGGTGCTCAGAACGCCGGGAGCDesign primers
1839250TCGTCCTCGCCCACGTCCCCGTCCDesign primers
1886445GCCGACTCCGACGCCGCCGCCCACGCCGTCDesign primers
1892951CTGCTGCACGGGGGCAGCCTGCTGCACCGGAGCGGCCTGCTGCACGGGGGCAGCDesign primers
1921806TCAGGGCCAGGGTCACGGCCAGGGDesign primers
1935914GGGTCTCGCGCACCGCCGGGTATTCCGCACCGCCGGGTCTGCCGCACCGCADesign primers
1946966TCGTGGTCGTCGTCGTGGTCATGGDesign primers
1958679TCCTTGAACTCCTTGATCTCCGTGAACDesign primers
1969643TGC-GGC-GGC-GGC-TGC-CGC-GGC-GGCDesign primers
1978711GGGGCGGGTGCGGGGGCCGGGGCGDesign primers
1988565CGGCTCGGCGCAGCTCGTCGCGGGCCGGCGDesign primers
1995081GAGGCCCCGGCACCCGAGGGCCCCGCAGCCGAGGAGCCGGCACCCDesign primers
2012672GTGCTTCTCCTCGAGCTTCTCCTCGAGCTTCTTCTCDesign primers
2014690CAGTGCGACAGGGCGACAGGGCGADesign primers
2029655GGCGGCGCG-GGCGGCGCG-GGCGGGGCGDesign primers
2030497CCTGCACCGCCTCCTTCACCACCTCCTGGAACGCCTDesign primers
2078239CGGTCTCGGCCACAGGGGTCACGGTCTCGGCCGCGGGGGTCACGGTCTCGGCGGCCGGGGCCADesign primers
2104231GACGATGCGCTCCACGATCCGCTCGACCGTGCGCTCDesign primers
2197567CA-CC-GC-AG-GT-CA-GC-CC-AC-GG-GC-CG-GC-AC-CG-CA-AT-TC-AG-CC-CG-CG-GG-TC-AG-CA-CC-GT-GG-GT-CA-GC-CC-GC-GG-GC-GA-GDesign primers
2210025CCACGGCCAGGGCCACGCCCACGADesign primers
2252989GGCGCCGGCGGCGGCTCCGGCACCDesign primers
2257161GCGGGAGCGGAAGCGGGCGCGGCADesign primers
2263449GCGCCGCGTCAGCACGGCGTCAGCGCTGCGTCADesign primers
2264415GTTCGGCATTGTCAGGGCGTTCGGCTTTCTCGGGGCGTTCGGCGGTGTCAGGGTDesign primers
2334659CCCCGTCCTGTCCCCGTCCAGTCCCCGTGCGGTDesign primers
2352594GCCACG-GCCACG-GCCATG-GCCCCGDesign primers
2379745GGGAGCGAGTCGCTCGGGCGCGAGATGCTCAGGTGCGAGTCGTTCDesign primers
2422586TCCCCCGCACGCGCACCCGCACGCCGCACGCGCACCCGCACGCCGCACGCGCACCCGDesign primers
2503307CCGCCCTCGCACCGGGCGTTCTCGCACCGGCCGCCCTCGCGCCGADesign primers
2527307TCCGCT-TCCGGT-TCCGGT-TCCGGT-TCCGGTDesign primers
2578490CCACGGCGCAACCGGATCGGGCACGGCGCAGCCGCCTCGGGCACGGTGCAGCCGAATCGGTCAGGGCGCAGCCGGATCGGDesign primers
2614336ACCACCCCATGCCGCCCCATGCCGCCCCATDesign primers
2618180GCG-GCG-GTG-GCG-GTG-GCG-GTG-GCGDesign primers
2638173CGACAGCGTCAGCGTCAGCGACATDesign primers
2692514TTCGCGCC-CTACAGCC-CTACAGCC-CTACAGCC-CTACAGCC-CTACAGCC-CTACAGCC-CTACAGCC-CTACAGCC-CTACAGCC-CTACAGCC-CTACAGCCDesign primers

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