Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Alicycliphilus denitrificans BC

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
22319	GCGGCACGGCGCCGCACGGCGCGCC	Design primers
53067	ACAGGG-CCAGGG-CCAGGG-CCAGGG	Design primers
64557	AGGCCCAGGCCGAGGCGCAGGGCC	Design primers
107392	GCGGCGCCGGCGGCGGCCGTGGCG	Design primers
107968	CGTGCGCGAGGTGGTCCGCGAGGTCGTGCGCGAAGT	Design primers
208843	GGGCGT-GGGCAT-GGGCAT-CGGCGT	Design primers
210373	CGCGCCTGTGCGCCTGCGCGCCGG	Design primers
285283	GGCCGTGGCCTTTGCCGTGGCCGT	Design primers
348987	GCGCACGCGCACGAGCACGCGCAG	Design primers
362572	CGC-CGC-CGC-GGC-CGC-CGC-GGC-CGC-CGC-GGC	Design primers
447951	GGCCGAGGCCGGCGCCGAGGCCGA	Design primers
462279	CCGCCGCGGCCGCCGCCCCAGCCGCCGCCG	Design primers
477878	GCCGCTCCCGCTGCCGGTGGCGCT	Design primers
483136	CATCGA-CATCGA-GATCGA-GATCGA	Design primers
520085	GGCGC-GGCGC-GGCGA-GGAGC-TGCGC	Design primers
621201	CCCCCGCACCCGCCCCGGCCCCGG	Design primers
645122	CACGCC-CGCGCC-CGCGCC-CGCGCC	Design primers
741663	CTGCCGCCCCGCCAGCGCCTGCCGCCGCGGCAGCGCCTCCCGCCCGGCCGGCGC	Design primers
776119	TATGGCTACGGCTATGGTTATGGC	Design primers
805808	CGCCGCCGCTGCTGCCGCCTCCGC	Design primers
810927	GGCTGGCCGGCCGGCCGGCTTGCC	Design primers
821802	CCAGCG-CCTGCG-CCTGCG-CCAGCG	Design primers
869466	GCCCATGCC-GCCCATGCC-ACCCATGCC-GCCCATGTC	Design primers
898148	TGCGGCGGCGGCGGCGGCAGCGGC	Design primers
903728	CTCACTTCA-CTCACTTCA-CTTACTTCA	Design primers
915019	CGCCCCCGCGCCCGCCGCCGCGCCCGCGCCCGCCGC	Design primers
1041601	GGCGGGGGCGGCTGCGGGAGCGGG	Design primers
1131240	ACG-CTG-GCG-GCG-GCG-GCG-GCG-GCG-GCG-GCG-GCG-GCG-GCG-GCG-GCG	Design primers
1161071	GCCACGCCCACGGCCACGGCCGCG	Design primers
1168257	AGGCTGCCGCCGACGCTGCTGCCGGCGCTGCCGCCG	Design primers
1191421	CTGCGCTGCACGGCGATGCGCTGCA	Design primers
1195150	CGATGGCGCCCATGGCGCCCATGGCGC	Design primers
1405728	GCCTCGGCCTCTTCCTCGGCCTCT	Design primers
1418448	GCCCGATGGGCCCGTTGGGCCCCATGG	Design primers
1462459	CACCTGCGCCTGAACCTGCGCCTG	Design primers
1492306	CCCTCTCGGCGCCCTGCCGGCGCGCTTTCGGCG	Design primers
1509638	ACCGTGCTAGCACCGTGCCAGGCCCTTGCTAGC	Design primers
1525548	CCAGCAGGACCCGCAGGACCAGCAGGA	Design primers
1587226	CCGGAACCGAAACCTGAACCGAAA	Design primers
1607523	GCCGCGCCCGCGGCCGCAGCCCCG	Design primers
1688979	GCGCCTGCGCCACCGCCTGCGCCAGGGCCT	Design primers
1690892	CAGCGCGAGCGCCAGTGCCAGCGT	Design primers
1708010	CGACGGTTGTTTGACGGTTATTCGACGGTTGCC	Design primers
1727795	CGCAATGTCACGCGGTGTCACGCAATGTCC	Design primers
1727828	TAGATA-AAGATA-CAGATA-CAGATA	Design primers
1744302	CTAAGACCAAGACTAAGCCCAAGA	Design primers
1797404	CGCGCAGCGCGGGCAGCGCGGGCAGCG	Design primers
1820112	CCCCATTTCCCCCTTTCCCCATTC	Design primers
1878863	CGGTGGGCG-CGGTGGGCG-CGGTGGACG	Design primers
1915647	CGGCAC-CCGCAC-CCGCAC-CCGCAC	Design primers
1943417	GGCCCA-GGCCCA-GGCGCA-GGCCCA	Design primers
1957857	GGCCAGGGCAAGGACCAGGGCCAG	Design primers
2144568	CGGTGGCGGCGGCGGCGGCAGTGGTGGTGG	Design primers
2164701	GGGAGCGGCAGCCGGAGCGGGCGC	Design primers
2171690	GCAGC-GCATC-CCAGC-CCAGC-GCGGC	Design primers
2192051	CTAAGC-CGAAGC-CGAAGC-CGAAGC	Design primers
2195965	TGCCGCCCAGGATGCCGCCCAGCACGCCGCGCAGGA	Design primers
2218983	TGCGCCTGGGCCAGCGCCTGCACC	Design primers
2232250	GCCGAT-GGCGAT-GGCGAT-GGCGAT-GGCGAT	Design primers
2282080	CGCCAAGGCCAACGCCATCGCCGA	Design primers
2366849	CAGCAGCGCCAGCAACGCCAGCAGCGG	Design primers
2418626	CCACGCTCACGCCCACGGGCACGC	Design primers
2456320	TGAACGCGCTCAACGCGCAGAACGCGC	Design primers
2462593	GCGCCCTGGGGCGCGACCTGGAGCGCGCGCTGTGGC	Design primers
2511700	CCGGCG-CCAGCG-CCAGCG-TCGGCG	Design primers
2606278	GTG-GCG-GCG-GCG-GTG-GTG-GTG-GCG	Design primers
2614471	GGTGCTGGTGTTCGTGCTGGTGGT	Design primers
2622279	CGCCACCGCCCCGGCCACCGCCCC	Design primers
2629399	CAACGCCAACCCCAACGGCAACGG	Design primers
2690765	GGCCACGGCCAGGACCACGGGCAC	Design primers
2845531	TGGTCGTGA-TGATCGTGA-TGATCGTGA-TGATCGTGA	Design primers
2922762	CCGCC-CGCAT-CGCAT-CGCAT-CGCAT-CGCAT-CGCAT-CGCAT-CGCAT-CGCAT-CGCAT-CGCAT	Design primers
3039673	CCGGCGGCG-CCGGCGGCG-GCGGCGGCG-GCGGCGGCG	Design primers
3080595	GCCGCCAGC-CCCGCCAGC-CCCGCCAGC	Design primers
3113966	CCGGCGCTGGCGCGGGCGGCGGCG	Design primers
3186490	CACCGCCACCACCAGCGCCACGGC	Design primers
3193588	CCGCGCCCTCGCCCGCGGCCCCGC	Design primers
3199500	CGGCG-CGGCG-CGGCA-GGGCG-TGGCG	Design primers
3221275	CCTGATCCAGATCCTGAACATGAT	Design primers
3226207	TCTCGATGTCGAACTCGATCTCGG	Design primers
3237549	CGCCGCCCCCGCCGCCGAGGCCGC	Design primers
3294361	GCTGGCCCTGCTGCTGCTGTGCCCGCTGCTGCTGGCCGTGGCGCT	Design primers
3330471	CGG-CCG-CCA-CCG-CCA-CCG-CCA-CCG-CCA-CCG-CCA-CCG	Design primers
3335557	ATGGCGGCAGAGGACGGCAGAGGGCGGCAC	Design primers
3345596	TCGCCCAGCTCGCGCAGCTCGGCCAGC	Design primers
3366198	CG-CA-CG-GG-CA-CG-CG-CT-CG-CC-CA-CG	Design primers
3392192	CCTGGGCAT-CCTGGGCAT-CCTGGGCGT	Design primers
3403549	CGCGCCGC-GGCGCCGC-GGCGCCGC	Design primers
3512716	ACCGGCGCACCCGCGCACCGGCCC	Design primers
3527897	CGGCCAGGGCCACGGCAACGGCCG	Design primers
3545274	CACCACCAGCACCGCCAGCACCAGCAG	Design primers
3570393	CCCGCCGCCGCCACCGCCCACGCC	Design primers
3633812	GGCGGGCGCGGGGGCGGGGGCAGG	Design primers
3647495	GCTGGGCTGCGCCGCGCTGCTGTGGGCTGC	Design primers
3656734	GTCGGCTTCGGCGCCGGCGGCGGC	Design primers
3700237	GCCCTTGCCGCCTTTGCCGCCCTTGTC	Design primers
3713673	AGAAGAAGAAGAGGAAGAAGAAGG	Design primers
3753855	GCTGGCACTGGCGCTGGCGCTGCC	Design primers
3764870	GCAGCTCCAGCTGCAGCAGCAGCG	Design primers
3814543	GCGGCACCGGCCAAGAAGGCCGTAGCGGCCAAGAAGGCAGCGCCAGCCAAGAAG	Design primers
3819636	CGGCCACGGGGGCGGCGGCCGCGGGCGCCGCGGCGGCAGGGGCGG	Design primers
3828207	GCACCAGCGCCAGCCCCAGCACCG	Design primers
3899449	CCGAGGCCGTGGCAGAGGCCGCGG	Design primers
3943484	TCACCAGGATCACCAGGTACACCAGGA	Design primers
4010919	GCGGCGGCGGGGGCGGCGGGGGCGCCGGCG	Design primers
4021577	CAGGCCCAGGCGCTGGCCCCGGCC	Design primers
4048991	TCGGCCACGGCCTCGGCATCGACC	Design primers
4062730	GCAGGACGCGCTGGACGCGCAGGAGGC	Design primers
4083921	GCAGCATCAGCAGCGGCAGCAGCA	Design primers
4247058	CTCGCGATCGCGCTGGCGCTGGCG	Design primers
4248040	GCCTGCACCTGCGCCTGGGCCTGG	Design primers
4267338	CCACGGGCACCTCGGGCACCACGGCCA	Design primers
4291472	GGCGCGCCGGCGCGCGCGCGCGCC	Design primers
4408876	GACCAGCACCACGGCCAGCACCACGGCCAGCGCCAC	Design primers
4435395	GGCGGCGCACGTCGCCGCACAGCGGCGCAA	Design primers
4491270	CCCGGCTCCGGCCCCAGCCCCCGC	Design primers
4508962	ACTGGGCAGCACCGTGCAGCCCTGGGCCGC	Design primers
4538621	CGACCGCGACCACGAACGCCACCGCGAGCG	Design primers
4607636	GGTGGTGGCGGCTACGGTGGTGGCCGCAGCGGCGGCGGTGGCTAC	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

22319

GCGGCACGGCGCCGCACGGCGCGCC