Microsatellites /Tandem Repeats database

Genome: Alicycliphilus denitrificans BC

Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
22319GCGGCACGGCGCCGCACGGCGCGCCDesign primers
53067ACAGGG-CCAGGG-CCAGGG-CCAGGGDesign primers
64557AGGCCCAGGCCGAGGCGCAGGGCCDesign primers
107392GCGGCGCCGGCGGCGGCCGTGGCGDesign primers
107968CGTGCGCGAGGTGGTCCGCGAGGTCGTGCGCGAAGTDesign primers
208843GGGCGT-GGGCAT-GGGCAT-CGGCGTDesign primers
210373CGCGCCTGTGCGCCTGCGCGCCGGDesign primers
285283GGCCGTGGCCTTTGCCGTGGCCGTDesign primers
348987GCGCACGCGCACGAGCACGCGCAGDesign primers
362572CGC-CGC-CGC-GGC-CGC-CGC-GGC-CGC-CGC-GGCDesign primers
447951GGCCGAGGCCGGCGCCGAGGCCGADesign primers
462279CCGCCGCGGCCGCCGCCCCAGCCGCCGCCGDesign primers
477878GCCGCTCCCGCTGCCGGTGGCGCTDesign primers
483136CATCGA-CATCGA-GATCGA-GATCGADesign primers
520085GGCGC-GGCGC-GGCGA-GGAGC-TGCGCDesign primers
621201CCCCCGCACCCGCCCCGGCCCCGGDesign primers
645122CACGCC-CGCGCC-CGCGCC-CGCGCCDesign primers
741663CTGCCGCCCCGCCAGCGCCTGCCGCCGCGGCAGCGCCTCCCGCCCGGCCGGCGCDesign primers
776119TATGGCTACGGCTATGGTTATGGCDesign primers
805808CGCCGCCGCTGCTGCCGCCTCCGCDesign primers
810927GGCTGGCCGGCCGGCCGGCTTGCCDesign primers
821802CCAGCG-CCTGCG-CCTGCG-CCAGCGDesign primers
869466GCCCATGCC-GCCCATGCC-ACCCATGCC-GCCCATGTCDesign primers
898148TGCGGCGGCGGCGGCGGCAGCGGCDesign primers
903728CTCACTTCA-CTCACTTCA-CTTACTTCADesign primers
915019CGCCCCCGCGCCCGCCGCCGCGCCCGCGCCCGCCGCDesign primers
1041601GGCGGGGGCGGCTGCGGGAGCGGGDesign primers
1131240ACG-CTG-GCG-GCG-GCG-GCG-GCG-GCG-GCG-GCG-GCG-GCG-GCG-GCG-GCGDesign primers
1161071GCCACGCCCACGGCCACGGCCGCGDesign primers
1168257AGGCTGCCGCCGACGCTGCTGCCGGCGCTGCCGCCGDesign primers
1191421CTGCGCTGCACGGCGATGCGCTGCADesign primers
1195150CGATGGCGCCCATGGCGCCCATGGCGCDesign primers
1405728GCCTCGGCCTCTTCCTCGGCCTCTDesign primers
1418448GCCCGATGGGCCCGTTGGGCCCCATGGDesign primers
1462459CACCTGCGCCTGAACCTGCGCCTGDesign primers
1492306CCCTCTCGGCGCCCTGCCGGCGCGCTTTCGGCGDesign primers
1509638ACCGTGCTAGCACCGTGCCAGGCCCTTGCTAGCDesign primers
1525548CCAGCAGGACCCGCAGGACCAGCAGGADesign primers
1587226CCGGAACCGAAACCTGAACCGAAADesign primers
1607523GCCGCGCCCGCGGCCGCAGCCCCGDesign primers
1688979GCGCCTGCGCCACCGCCTGCGCCAGGGCCTDesign primers
1690892CAGCGCGAGCGCCAGTGCCAGCGTDesign primers
1708010CGACGGTTGTTTGACGGTTATTCGACGGTTGCCDesign primers
1727795CGCAATGTCACGCGGTGTCACGCAATGTCCDesign primers
1727828TAGATA-AAGATA-CAGATA-CAGATADesign primers
1744302CTAAGACCAAGACTAAGCCCAAGADesign primers
1797404CGCGCAGCGCGGGCAGCGCGGGCAGCGDesign primers
1820112CCCCATTTCCCCCTTTCCCCATTCDesign primers
1878863CGGTGGGCG-CGGTGGGCG-CGGTGGACGDesign primers
1915647CGGCAC-CCGCAC-CCGCAC-CCGCACDesign primers
1943417GGCCCA-GGCCCA-GGCGCA-GGCCCADesign primers
1957857GGCCAGGGCAAGGACCAGGGCCAGDesign primers
2144568CGGTGGCGGCGGCGGCGGCAGTGGTGGTGGDesign primers
2164701GGGAGCGGCAGCCGGAGCGGGCGCDesign primers
2171690GCAGC-GCATC-CCAGC-CCAGC-GCGGCDesign primers
2192051CTAAGC-CGAAGC-CGAAGC-CGAAGCDesign primers
2195965TGCCGCCCAGGATGCCGCCCAGCACGCCGCGCAGGADesign primers
2218983TGCGCCTGGGCCAGCGCCTGCACCDesign primers
2232250GCCGAT-GGCGAT-GGCGAT-GGCGAT-GGCGATDesign primers
2282080CGCCAAGGCCAACGCCATCGCCGADesign primers
2366849CAGCAGCGCCAGCAACGCCAGCAGCGGDesign primers
2418626CCACGCTCACGCCCACGGGCACGCDesign primers
2456320TGAACGCGCTCAACGCGCAGAACGCGCDesign primers
2462593GCGCCCTGGGGCGCGACCTGGAGCGCGCGCTGTGGCDesign primers
2511700CCGGCG-CCAGCG-CCAGCG-TCGGCGDesign primers
2606278GTG-GCG-GCG-GCG-GTG-GTG-GTG-GCGDesign primers
2614471GGTGCTGGTGTTCGTGCTGGTGGTDesign primers
2622279CGCCACCGCCCCGGCCACCGCCCCDesign primers
2629399CAACGCCAACCCCAACGGCAACGGDesign primers
2690765GGCCACGGCCAGGACCACGGGCACDesign primers
2845531TGGTCGTGA-TGATCGTGA-TGATCGTGA-TGATCGTGADesign primers
2922762CCGCC-CGCAT-CGCAT-CGCAT-CGCAT-CGCAT-CGCAT-CGCAT-CGCAT-CGCAT-CGCAT-CGCATDesign primers
3039673CCGGCGGCG-CCGGCGGCG-GCGGCGGCG-GCGGCGGCGDesign primers
3080595GCCGCCAGC-CCCGCCAGC-CCCGCCAGCDesign primers
3113966CCGGCGCTGGCGCGGGCGGCGGCGDesign primers
3186490CACCGCCACCACCAGCGCCACGGCDesign primers
3193588CCGCGCCCTCGCCCGCGGCCCCGCDesign primers
3199500CGGCG-CGGCG-CGGCA-GGGCG-TGGCGDesign primers
3221275CCTGATCCAGATCCTGAACATGATDesign primers
3226207TCTCGATGTCGAACTCGATCTCGGDesign primers
3237549CGCCGCCCCCGCCGCCGAGGCCGCDesign primers
3294361GCTGGCCCTGCTGCTGCTGTGCCCGCTGCTGCTGGCCGTGGCGCTDesign primers
3330471CGG-CCG-CCA-CCG-CCA-CCG-CCA-CCG-CCA-CCG-CCA-CCGDesign primers
3335557ATGGCGGCAGAGGACGGCAGAGGGCGGCACDesign primers
3345596TCGCCCAGCTCGCGCAGCTCGGCCAGCDesign primers
3366198CG-CA-CG-GG-CA-CG-CG-CT-CG-CC-CA-CGDesign primers
3392192CCTGGGCAT-CCTGGGCAT-CCTGGGCGTDesign primers
3403549CGCGCCGC-GGCGCCGC-GGCGCCGCDesign primers
3512716ACCGGCGCACCCGCGCACCGGCCCDesign primers
3527897CGGCCAGGGCCACGGCAACGGCCGDesign primers
3545274CACCACCAGCACCGCCAGCACCAGCAGDesign primers
3570393CCCGCCGCCGCCACCGCCCACGCCDesign primers
3633812GGCGGGCGCGGGGGCGGGGGCAGGDesign primers
3647495GCTGGGCTGCGCCGCGCTGCTGTGGGCTGCDesign primers
3656734GTCGGCTTCGGCGCCGGCGGCGGCDesign primers
3700237GCCCTTGCCGCCTTTGCCGCCCTTGTCDesign primers
3713673AGAAGAAGAAGAGGAAGAAGAAGGDesign primers
3753855GCTGGCACTGGCGCTGGCGCTGCCDesign primers
3764870GCAGCTCCAGCTGCAGCAGCAGCGDesign primers
3814543GCGGCACCGGCCAAGAAGGCCGTAGCGGCCAAGAAGGCAGCGCCAGCCAAGAAGDesign primers
3819636CGGCCACGGGGGCGGCGGCCGCGGGCGCCGCGGCGGCAGGGGCGGDesign primers
3828207GCACCAGCGCCAGCCCCAGCACCGDesign primers
3899449CCGAGGCCGTGGCAGAGGCCGCGGDesign primers
3943484TCACCAGGATCACCAGGTACACCAGGADesign primers
4010919GCGGCGGCGGGGGCGGCGGGGGCGCCGGCGDesign primers
4021577CAGGCCCAGGCGCTGGCCCCGGCCDesign primers
4048991TCGGCCACGGCCTCGGCATCGACCDesign primers
4062730GCAGGACGCGCTGGACGCGCAGGAGGCDesign primers
4083921GCAGCATCAGCAGCGGCAGCAGCADesign primers
4247058CTCGCGATCGCGCTGGCGCTGGCGDesign primers
4248040GCCTGCACCTGCGCCTGGGCCTGGDesign primers
4267338CCACGGGCACCTCGGGCACCACGGCCADesign primers
4291472GGCGCGCCGGCGCGCGCGCGCGCCDesign primers
4408876GACCAGCACCACGGCCAGCACCACGGCCAGCGCCACDesign primers
4435395GGCGGCGCACGTCGCCGCACAGCGGCGCAADesign primers
4491270CCCGGCTCCGGCCCCAGCCCCCGCDesign primers
4508962ACTGGGCAGCACCGTGCAGCCCTGGGCCGCDesign primers
4538621CGACCGCGACCACGAACGCCACCGCGAGCGDesign primers
4607636GGTGGTGGCGGCTACGGTGGTGGCCGCAGCGGCGGCGGTGGCTACDesign primers

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