Microsatellites /Tandem Repeats database

Genome: Comamonas testosteroni CNB-2

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
66912GCAGGTCCAGGTGCACGTGCAGGCDesign primers
116117TGGGCATGGTCATGGGCATGGGCCDesign primers
388712CATCGA-CATCGA-CGTCGA-GATCGADesign primers
395538TTTCTGGCCGTGTTTGGGGCCGTGGTGCTGGCCGTGDesign primers
443715CATGGC-CATGGC-CAAGGC-CGTGGCDesign primers
510354GACGACGAGGACGCCGACGAAGACDesign primers
550737GCGGCTGGCTCAGGTGCGGCCGGCTCAGGTGCGACCGGCCCAGGTDesign primers
553108GCA-GCA-GCA-CCA-GCA-GCA-GCA-CCADesign primers
634978ATCAATGCCATCAAGGCCATCAATCCCDesign primers
685207GCCCTGGGCCTGGCCCTGGCGCTGDesign primers
725900TGCCCATGC-CGCCCATGC-CGCCCATGCDesign primers
857765TGGCGGCTTTCTTGGCTGCGTTCTCGGCGGCTTGCTDesign primers
904610CGTCCCCCTCAGTCCCTCTCCGTCCCCCTCDesign primers
999285ATTTCTTTTTAGTTCCTTTTAATTCTTTTTDesign primers
1039316GCAGCAGCAGCGGCGGCAGCAGCGDesign primers
1141621CGGCCGCCGCGACCGCCGCGGCCGCCADesign primers
1204075CTGCACGGCTTCACGGCTGCACCGDesign primers
1226179CAGTGCGGTGCCGTGAAGTGCAGCGDesign primers
1246600GGTGCTGGAGTGCTGGGGCGCTGGDesign primers
1280110GCAGCACCAGCAGCACCAGAAGCADesign primers
1290287CCTGCTGCTGACGCTCCTGCTGCCCCCGCCGCTGACGCTCCTGCTGCTCCTGCCGCTGACGCTCCTGCTGCTCCCGCCGCTGAAGCTCCTGCTGCCDesign primers
1507240GGCCATGGCCGTGGCCACGGGCATDesign primers
1628057AAATCGCACCGATTTCGCACCGAAATCGCACCGDesign primers
1700120AAGGGCAAAGGCAAGGACAAGGGCDesign primers
1725140CCCCTGTG-TCGCCGTG-TCGCCGTG-TCGCCGTG-TCGCCGTG-TCGCCGTGDesign primers
1738023AAATCGCACCGATTTCGCACCGAAATCGCACCGDesign primers
1807034GATCTTGGTCTTGAGCTTGAACTTDesign primers
1899164CGTGTG-CGTGTG-CATGTG-CATGTG-CATGTG-CATGTGDesign primers
1974036ATGCCGCGCCTTCGCCGGCCGCGCCTTTGCCTGCCGCGCCTTTGCDesign primers
2016241AAAAAGCCGGCAACAAAGCCGGTAACAAAGGCGGCAACAAAGGCGGCADesign primers
2018110CCTGTGCCAGTGCCTGGGCCTGGGDesign primers
2050584GCAAGGGGCGCCCGGCCAGGGGTGCCCGGCGAGGGGTGCCCGDesign primers
2104052CGCCACCAG-TGCCACCAG-TGCCACCAG-TGCCACCAGDesign primers
2122491AGCTGGCTGGAGCTGCCCGGATCTGGCTGGDesign primers
2127572TGGTCATGGTCTTCGTCATGGTCADesign primers
2158542CTCAACGC-ATCAACGC-ATCAACGCDesign primers
2333377ATCGGGATCGCGCTCGGGATCGGGDesign primers
2405284GCCGCCGCCGGCGTCGCCGCTGCCDesign primers
2449884TCGTCGTGATCGTGGTGATCGTCATGADesign primers
2488604GAGGCC-GAGGCC-CAGGCC-GTGGCCDesign primers
2535216CTTTGT-CGGCAT-CGGCAT-CGGCAT-CGGCAT-CGGCAT-CGGCAT-CGGCAT-CGGCAT-CGGCAT-CGGCAT-CGGCATDesign primers
2577398TGAACT-CGCACT-CGCACT-CGCACT-CGCACT-CGCACTDesign primers
2617387CATGACCACGACCATGATCATGAGDesign primers
2697455CATGGCCGTGGCCGTGGCCATGGGDesign primers
2717893CAGGCCCAGACCCAGGCCCAGTCCDesign primers
2807285TGCAGCACTGCAGTACTGCAGCACDesign primers
2865164ATGACCGCCATGTTTGGG-ATGACGGGCATGTCTGGG-ATGACCGGCATGTCTGGG-ATGACCGGCATGTCTGGG-ATGACCGGCATGTCTGGGDesign primers
2915388TGCCCTGC-TGCCCTGC-CGCCCTGC-TGGCCTGCDesign primers
2979117CTAATGCCCGCTGATGCCTGCTAATGGCCGDesign primers
2985984TAGGATG-CCAAATG-CCAAATG-CCAAATG-CCAAATG-CCAAATG-CCAAATG-CCAAATG-CCAAATG-CCAAATG-CCAAATG-CCAAATG-CCAAATG-CCAAATG-CCAAATG-CCAAATG-CCAAATG-CCAAATG-CCAAATG-CCAAATG-CCAAATG-CCAAATG-CCAAATG-CCAAATGDesign primers
3040065CGGCGGCATCTGCCGGGGCTGGGGCGGCATTTGCCGGGGGTACTGCGGCATTTGCCGGTGGTGDesign primers
3209080GCCTGCCACACCTGCCACCCCTGCCACDesign primers
3231986GTGGCTGGCTGCTGCTGGCTGCTGCTGGCTDesign primers
3237824TCCAGCTGCGCCAGCTGCTCCACCTGCDesign primers
3250852CCACAGCCA-ACACAGCCA-ACACAGCCA-ACACAGCCADesign primers
3295953CGGCGGCCGTCTTGGCGGCGGGCTTCTTGGCCGCAGCCTTCTTGGDesign primers
3411857TGTAGCACCTGTAACACCTGTAGCACTDesign primers
3413290CTCCATGCATCCATCATGCATCCCCCATGCATCDesign primers
3462841CCTCCGGCTCCGCCTGCGCCTCCCDesign primers
3484373CTGGAGCGGCGGCTCCCGAAGCAGCGGCTCCCGAAGCGGCGGCTCDesign primers
3761893TGGCCCTGGCTCAGGCCCTTGCCCDesign primers
3782578CAAGGAAAAAGCCGAAAAGGACAAGGCCGAGAAGGAAAAGGCCGADesign primers
3782774AAAGCTGCCAAGGACAAGGCTGCCAGGGAAAAAGCCGAGAAGGACDesign primers
3857817GAAGCGGCGCAGCGGCGATGCGGCDesign primers
3888638GCG-GCA-GCG-GCT-GCT-GCA-GCG-GCTDesign primers
3892483CAGCAGCAGCTGCAGCAACTGCAGDesign primers
3917513ATATCAGGCTCATTCCAGGCTCATTCCAGGCTCDesign primers
3965093GATGATGCCGATGATGGCGATGATGTCDesign primers
3969419GCCGCCAGGGCCGCCGGGGCCGCCCGGDesign primers
3991390GGCCGAGCGGGGCTGAGTGGGGCTGAGCGGDesign primers
4221658GCG-GCA-GCG-GCT-GCT-GCA-GCG-GCTDesign primers
4248452TCTGCG-TTCCGG-TTCCGG-TTCCGG-TTCCGG-TTCCGG-TTCCGG-TTCCGG-TTCCGG-TTCCGG-TTCCGG-TTCCGGDesign primers
4337107GCCCTGGCCTTGGCCGTGGCCTTGDesign primers
4374000GCAGCTCAGCGCATCGCCGCGCTGCDesign primers
4430270CTGCGCCTGCACCTGCGCCTGGGCDesign primers
4481473CGCCCA-CGGCCA-CGGCCA-GGCCCADesign primers
4579033GGTCCTGAATAGACCTGAATGGACCTGAATDesign primers
4595069GCGGCCGCCACGGGAGCAGCGGCAACGGGAGCTGCCGCCAAGGGGDesign primers
4793828ACCGGG-GCCGGG-GCCGGG-GCCGGG-GCCGGGDesign primers
4795155CCGGAGCCAACGGAGCCATCGGAGCCADesign primers
4850994CACGGCGCTCGTCGT-TGCGGCGGTCGTCGT-TGCGGCGGTCGTCGT-TGCGGCGGTCGTCGT-TGCGGCGGTCGTCGTDesign primers
4936370TGCGGCTGCCGCAGCGGCTGCAGCDesign primers
5180413ATGAGCATGGGCTTGAGCATGACCDesign primers
5203766GCCACGGCCAGGTCCACGGTCACGDesign primers
5207946GCCCGC-GAACAC-GAACAC-GAACAC-GAACAC-GAACAC-GAACAC-GAACAC-GAACACDesign primers
5275553TGGCGG-TGGCGG-TGGTGG-TCGCGGDesign primers
5323154AAAAACAAAAAAACAAAGAAAACAAAGAAADesign primers

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