Microsatellites /Tandem Repeats database

Genome: Halobacterium salinarum R1

Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
52879GTTCTTCGATCCGCTCTTGCTGCTCTTCGATCCGTTCGTTCTGTTCCTCGATCCGCTTGTCCTDesign primers
170131CGCCAC-CGCCAC-CACCAC-CGCCTCDesign primers
182540CGGACGCGGTCGCCGACGCCGACGDesign primers
184965TCGGCGTCCGCGTCGCCGTCGTCGDesign primers
190616GCGCTCTCGCTCGCGCTCGTGCTCDesign primers
201596ACGACGACGTCGAGGACGTCGACGDesign primers
201962CGCCGA-CGCCGA-CGCGGA-CACCGADesign primers
224323ACGCCGTCGCCGACGCCATCGCCGACGGCGDesign primers
258767CGT-CGT-CGG-CGT-CCT-CGT-CGT-CGT-CGT-CGTDesign primers
273527GGGTTCGGCGGGGTCGGCGTGTTCGGCDesign primers
275377GGGCGGCCCGGGTGGCCCCGGCGGCCCDesign primers
303502CGACGTCGACGCCTACGTCTACGTDesign primers
311811CGTCCGCGGTCGCCTCCGCGATCGCGTCCGCGACCGDesign primers
319926CCGACGACAGCGACGACACCGACGACGDesign primers
332837GCC-GCC-GCC-GAC-GCC-GTC-GAC-GCCDesign primers
349982GACGACGGCGACGAGGACGACGGCDesign primers
371915CCATGCCGCCCATGCCACCCATGCCGCDesign primers
447540GGC-GGC-GGC-GGT-GGT-GGC-GGG-GGCDesign primers
466385CGACGACGACGACGGCGACGACGADesign primers
499671CGT-CGC-CGC-CGC-CGT-CGC-CGA-CGCDesign primers
516289TCGTGTTCGCGTTCGCGTTCCTGTDesign primers
546409CGCCGACACCGACGCCTACGACGADesign primers
708567CCGACGCCGTCGCGGACGCCTACGDesign primers
711351CGTCGGCGTCGACGCCGGCCTCGGDesign primers
718930CGAACTCGTCGTCGAAGTCGTCATCGAAGTCCTCGTDesign primers
751812GATGATCTGGATAATCTGGATGACCTGDesign primers
753071GACGCCGCCACGCCGCGACGCCGCDesign primers
789938ACGTCCGCGTCCACGTCGACGTTCDesign primers
803936GCGTCAGCGTCTGTGTCAGCGACADesign primers
828668CGTCGTCATCGTCGTCGTCGTGGTDesign primers
836024ATCGCGAACAGCGCGAACAACGCGAACDesign primers
837140TCG-TCG-TCG-TCG-CCG-TCG-TCG-GCGDesign primers
837434CGTCGTCGTCGTCGTCATCGTCGTDesign primers
839321CGTCGTCGTAGTCGCCGTCGTCGADesign primers
843562CGGCGTCGCCGTCGGCGGCGGCGTDesign primers
855048TCGACGCCGACGTCGTCGTGGACGDesign primers
855634GACGTC-GACATC-GACATC-GACGTCDesign primers
868940GCC-GCC-GCC-GTC-GTC-GCC-GCC-GGC-GAC-GCCDesign primers
878937GGACGCCGACGCGGCCGCCGACGCDesign primers
902979ACGCCGACGCCTACGTCGACGCGGDesign primers
912584CGAAACACCCGAAACAGCCGAAACACGDesign primers
926690CCGTCG-CCGTCG-CCGACG-CAGTCG-CCGGCGDesign primers
936306GCCGCCGCAGCCGGCGCCGCCGCTDesign primers
957286TCG-GCG-TCG-GCT-TCC-GCG-TCG-TCG-TCG-TCGDesign primers
987667CGTTGTCGTTGGCGGTGTCGTGGTDesign primers
1083118CGA-CGA-CGG-CGA-CGC-CGA-CGG-CGADesign primers
1093330CGT-CGT-CGA-CGT-CGT-CGG-CGA-CGTDesign primers
1138315CGTGCTCGACGGCGAGATCGACGGCGTGCGCGACGGDesign primers
1140575CCCACGACCGCGAACACGACTACGACCGCGAACGCGACCACCACCGCGAACGCGDesign primers
1195067GCGTCGCCGGCGTCGCGGTCGTCGCCGDesign primers
1233957GACGACGAGGACGCCGACGACGTCDesign primers
1277648GGGCGTGGTCGTGGTCGTGGGCGGDesign primers
1287443GACGCCATCGACGCGATCGACGCCGTCDesign primers
1294738GCGTCGGCGGCGGCTTCGGCGTCGDesign primers
1309402GTCGGC-GTCGGC-GACGGC-GTCGACDesign primers
1314069GCCGACGGCGACGTCGACGCGGACDesign primers
1344867TCGACGTCGAGGTCGTCGTCGATGDesign primers
1377164GGGAGACGACAACCGCGACAGAAGAAACGACAACCACGACAGAAGGGACGACAACCACGACAGDesign primers
1420229CGA-CGA-CGA-GGA-CGA-CGA-GGA-CGADesign primers
1528088GCCGCCCATGCCACCGCCCATACCGCCGCCCATGCCDesign primers
1559800CAGACGCAGAAGTAGACGCCGACGDesign primers
1581266CGACGACGAGGACGCCGACGACGGDesign primers
1602227TCGACGTCCACGTCGAGGACGACGDesign primers
1615694GCCGCCGCCACCGCCGCCGCCGCTGTCGCCGCCGACDesign primers
1617841CGACGCCGCCGCCGACGACGACGADesign primers
1619575CGCCGCCGACGCCGCCGACGCCGTDesign primers
1625960CGGCGGCGTCGGCGTCGGCGGCCGCGTCGGCGGCGTDesign primers
1629517CCGCGAACGCGACCGTGACCTCGADesign primers
1644319GCCGCCCATGCCACCCATACCGCCCATGCCGCCCATDesign primers
1690617CGAAGTCGAGGTCGACGTCGAACTDesign primers
1703793CGA-CCA-CGA-CCT-CGA-CGA-CGA-CGADesign primers
1708525TGGCGG-TGGCGG-CGGCGG-TCGCGGDesign primers
1709112TCGGCGTTGGCGTCGGCCTCGGCCDesign primers
1786922GGCGGCCGCGGGCGGCGGCTCGCGGACGCGDesign primers
1833180TCGGCGTTCTCCTCGGCGACCTCCTCGGCGTCCTCCDesign primers
1901330GTCGTCGTCGCCGTCTTCGTCGGCDesign primers
1915337CGGCGTCGGTGTCGGCGGCGTCGTDesign primers
1918032CGG-TGG-CGG-CGG-CGG-TGG-CGG-TGG-CGG-CGGDesign primers
1927204CGCCGACTCCGACGCCGCCGACGADesign primers
1927475GTCGCGCTCGCGGTCGTGGGCGCGGCCGCGTTCGCGDesign primers
1940649GCGGCAGCCGCCGGCCGCCGGCGGCGGCCGDesign primers
1943627GTCGGTGTCGCTGTCGGGGTCGGCDesign primers
1967821CGACGCCGACCCGGACGCCGACGACGATGCDesign primers
1968563ACG-CCG-ACG-CGG-CCG-CCG-ACG-CCGDesign primers
2000784GACCGAGACGAC-CACCGAGACGAC-CACCGAGATGACDesign primers

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