Microsatellites /Tandem Repeats database

Genome: Acidobacterium sp. MP5ACTX9

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
73059GCAGTTGCTGTTGCAGTTGCTGTTDesign primers
178739GTTCCCGATGTTCACCCTTGTTTCAGATGTTGACCCTTGTTTCAGATGTTGACCCTTDesign primers
241140AACAACGACAAGAGCAACGGCAACGACAAGAGCGACGGCAACGACAAGAGCGACDesign primers
257658CGCTGCTCTGCGATGTGCTGCGCGGCGATGDesign primers
461573TTTGTGGTGGGTTTATGGTGAGTTTGTGGTGATDesign primers
463056CGTCGTCGGCGTCGACGGCGTTGTCGGDesign primers
472690GAACGG-CAACGG-CAACGG-CAACGG-CAACGGDesign primers
472736GGCAACGACAACGGCAAGAGCAACGGCAAGDesign primers
516375TGGGACAGGGCTCAGGGATCAGGGATCAGGGATCAGGGATCAGGTGTCAGGGCTCAGGGCTCADesign primers
517751CCGAAC-GGCAAC-GGCAAC-GGCAAC-GGCAAC-GGCAAC-GGCAAC-GGCAAC-GGCAACDesign primers
523396CGAACG-GCAACG-GCAACG-GCAACG-GCAACG-GCAACGDesign primers
523438GCAATA-GCAATA-GCAACA-GCAACADesign primers
524336CTAGGGCCTAGAGCCTAGAGCCTAGGGADesign primers
524365CAGGGAA-CAGGGAA-CAGGGAA-CAGGGAA-CAGGGAA-CAGGGAA-CAGGGAADesign primers
531472TAAAACAAAAACAAAAACAAAAACDesign primers
531529GCAAATGCAACAGCAGCG-GCAAATGCAACAGCAGCG-GCAAATGCAAATGCAACGDesign primers
531595GCAACAGCAACGGCAGCG-GCAAATACAACGGCAGCG-GCAAATGCAACGGCAGCG-GCAAATGCAACGGCAGCG-GCAAATGCAACGGCAGCG-GCAAAAGCAACGGCAGCGDesign primers
534904CCGAAC-GGCAAC-GGCAAC-GGCAAC-GGCAAC-GGCAAC-GGCAAC-GGCAAC-GGCAACDesign primers
534959GCAGCG-GCAACG-GCAGCG-GCAGCG-GCAACG-GCAGCG-GCAACG-GCAGCGDesign primers
655359TAAGGATCAGGGATCAGGGAGCAGGGAGCAGGGAGCAGGGAGCAGGGAGCAGGGAGCAGGGAGCAGGGAGCAGGGAGCAGGGAGCAGGGAGCAGGGAGCAGGGAGCAGGGAGCAGGGAGCAGGGAGDesign primers
675251GGCGGCGAGGACGGCGAGGGCTGCGAGDesign primers
737280TTGCCG-TTGCCG-TTGCTG-TTGCTGDesign primers
737306CCGTTGCTGTTGCTGTTGCCGTTGCCGTCGCCGTTGCCGTTGCCGTTGCCGTTCDesign primers
742526CCGCATTTGTCGTTGCCGCTGCATTTGCTGTTGCCGCTGCATTTGCCGTTGCCGDesign primers
798363GGATGGCGATGGGGGTGGGGATGGDesign primers
813264GAAGCTGAACCTGAAGGTGACGCTDesign primers
821500CGCGGCCTTCTTGGCTACGGTCTTCTTGGCTGCTGCCTTCTTGGCDesign primers
821600ACCTTCTTGGCTACAGCCTTCTTTGCTACGGCCTTCTTCGCGACAGCCTTCTTCGCTACGDesign primers
821871TCTTCTTCGCTGGAATCTTTTTGGCTGGGATCTTCTTAGCAGGGATCTTCTTTGCCGGAADesign primers
822076GGACTTCTTTGCAGGAACCGTTTTCTTTGCAGGAACAGACTTCTTTGCCGGAACDesign primers
825969GCTTCGGCTTCCGCTGCGGCTTCCDesign primers
826851GCGGGACGCGGAGCAGCGGGACGGGCTGCAGCAGGACGCGGAGCGDesign primers
830027CCGAAGCTGAAGACGAAGCTGAAGDesign primers
865241TAATTTGTGGTGAGTTTGTGGTGATTTTGTGGTDesign primers
922201TGTATTGGCTGT-TGCTTTTGCCGT-TGCTTTTGCCGT-TGCTTTTGCCGT-TGCTTTTGCCGT-TGCTTTTGCCGTDesign primers
923909AAGCCG-TTGCCG-TTGCCG-TTGCCG-TTGCCG-TTGCCGDesign primers
927060ACTGACCACTGATCCCTGACCACTGATCDesign primers
930674CCCCATCACTGCCTCCTCACTGCTCCATCACTGDesign primers
931351CACCACCACCTCCACCAGCACCATDesign primers
932905GTTGCC-GTTGCA-ATTGCC-GTCGCC-GTTGCA-GTTGCC-GTCGCC-GTCGCC-GTTGCC-GTTGCC-GTTGCC-GTTGCC-GTTGCC-GTTGCC-GTTGCC-GTTGCC-GTTGCC-GTTGCC-GTTGCC-GTCGCCDesign primers
935293CCACCACCTCCACCACCCTCACCADesign primers
935461GCGGCAGCGGCGGCAGCAACGGCADesign primers
940593CCAATAACGCCGCCATCACTAATAACGCCGTCACCACCAAGAACGCCGTCACCADesign primers
990655GGCGAA-GCCGAA-GCCGAA-GACGAADesign primers
998751GTCGTCAATCTAAAAAA-GCCGTCAATCTAAAAAA-GCCGTCAATTGAAAAAA-GCCGTCAATCTAAAAATDesign primers
1030118GCTGTT-GCGGTT-GCGGTT-GCCGTT-GCCGTT-GCCGTTDesign primers
1030160GCTGTTGCCGTTGCAGTCGCCGTTGCAGTCGCCGTTDesign primers
1030197CCATTG-CCATTG-CCGTTG-CCGTTGDesign primers
1033611CAGCTGTCAGCTATGAGCTGTCAGCTGCDesign primers
1033673TTTGAGTTTTGAGCTTTCAGTTGTGAGTDesign primers
1034004CGAACA-GCAACA-GCAACA-GCAACA-GCAACA-GCAACADesign primers
1034041CTACAG-CAACAG-CAACAG-CCACAG-CTACAGDesign primers
1036795CGAACG-GCAACG-GCAACG-GCAACG-GCAACG-GCAACG-GCAACG-GCAACGDesign primers
1036846ATTGCGATTGCAACTGCGATTGCGDesign primers
1049188TTGGGCGGCAGTCTGCTGGGCGTCGGTCTGCTGGACGTCAGTCTGDesign primers
1055167CAGTGGTGGTGCAGTGTTGGGGCAGTGATGGTTDesign primers
1055448GCCGGT-GCCGGT-GTCGGT-GACGGTDesign primers
1069660AGAATGACGGTTGTGGGGGAAGGACGGTTGTGAGGGTAGGACGGTTGTGGGGGTAGGACGGTTGTGGGDesign primers
1126720GCTCCG-GCTCCG-GCTTCG-GCTCTGDesign primers
1134571CTTGCC-GTTGCA-GTTGCA-GTTGCA-GTTGCA-GTTGCADesign primers
1134608TTGCAG-TTGCCG-TTGCTG-TTGCTG-TTGCTG-TTGCCG-TTGCCGDesign primers
1221351CAACCGCAACGGCAACCGCAACTGDesign primers
1237479AGTGATAAGGCAGTGATGAGGCAGTGGAAAGGCDesign primers
1252278GGCGACGGCGGCGGCGATGGCGGCDesign primers
1265076ACAAGC-AACTGC-AACTGC-AACTGC-AACTGC-AACTGC-AACTGC-AACTGC-AACTGCDesign primers
1266246GGATGGTGCGGATGGGGCGGAAGGTGCDesign primers
1274477CAGGGATCGGGGATCAGGGACCAGGGAADesign primers
1278805CAAAGA-CAACGA-CAACGA-CAATGADesign primers
1285428AGGGAATAGGGAGTAGGGAACAGGGAGTDesign primers
1407062GAACCG-CAACCG-CAACCG-CAACCGDesign primers
1407101CGGCAACCGCATCGGCAACTGCAACCGCAACTGCAACCGCAACCGCAGCGGCAACGGCAACCGCAGCGGCAACGGCAACGGCAACCGCAACCGCAACCGCAACCGCAADesign primers
1443941CGAACG-GCAACG-GCAACG-GCAACG-GCAACG-GCAACGDesign primers
1508735AGGGCCTAGGGTCTAGAGCCTAGGGCCTDesign primers
1597859GCGCTCATGCGGGCTCCTGCTGGCTCATGCDesign primers
1658082CGT-TGC-CAT-TGC-CGC-TGC-TGT-TGC-TGT-TGCDesign primers
1667552GTGCGAGGGCGTGCGAAAGCGTGCGACTGCDesign primers
1796315CAGGGCCTAGGGAACAGGGCCTAGGGCCTAGAGCCTAGGGAACAGGGCCTAGCGAGDesign primers
1833969CCGAAC-GGCAAC-GGCAAC-GGCAAC-GGCAAC-GGCAAC-GGCAAC-GGCAAC-GGCAACDesign primers
1834050AACAGC-AAGAGC-AACGGC-AACGGC-AACGGCDesign primers
1848261AGGGACTAGGGCCTAGGGACTAGGGCCTDesign primers
1867078CCGCCACCTCCACCCCCACCGTCADesign primers
1880391CCGCACCCGCAGCGGCACCGGCACDesign primers
1883291CAGCAGCAGCATCGGCAGCACCAGDesign primers
1913292AGGGTGGGGGTGAAGGTGCGGGTGDesign primers
1919079TGCGGCGGCGGCAGCGGCTGCGGGDesign primers
1974863CCGAAC-CGCAAC-CGCAAC-CGCAAC-CGCAAC-CGCAACDesign primers
1974900GCAATGGCAACCGCAACGGCAACCGCAACCGCGACCGCAACGGCAACCGCAACCGCGACCGCAACCGCAACCGCAATGGCAACGGCAACGGCAACGDesign primers
1975109AACAACGGCAACTGCAAC-TGCAACGGCAACGGCAAC-TGCAGCCGCAACTGCAAC-TGCAACCGCAACTGCAAC-TGCAACGGCAACCGCAAC-CGCAACDesign primers
1977690GCGGGTGTTTGCGGGGGTTCGGGGGAGTTTDesign primers
2010225TTAGGGA-CCAGGGA-CCAGGGA-CCAGGGA-CCAGGGA-CCAGGGADesign primers
2060523GGTGAGGTTGAGGCTGAGGGTGGGDesign primers
2089073TGGATGTGGGGGGGGAGGTGGGGGAGGATGTGGGCGDesign primers
2091181CAACTGCAACTGCCAATGCAACTGCAACAACAACTGDesign primers
2091338CTGCAA-GTGCAA-GTGCAA-GTGCAA-GTGCAADesign primers
2091448TTTTGGGGTTAACCGACTTTTGGAGGTTAAACGACTTTTGGAGGCTAACCGACTDesign primers
2105459TT-CT-CT-TT-TT-TT-CT-TT-TT-AT-CT-TTDesign primers
2111706AACGGC-AACGGC-AACGCC-GACGGCDesign primers
2113193GAACGG-CAACGG-CAACGG-CAACGG-CAACGGDesign primers
2165197GCAACAACAACTGCAACTGCAACTGCAACGGCAACAACAACTGCAACTGCAACAACAACGGCAACTGCAACTGCAACTGCAACAACAACTGCAACTGCAACGGCAACAACAACTGCAACTGCAACAACAACTGCAACGGCAACADesign primers
2169729CTGACGCTGGCGGTGACGGTGACGDesign primers
2287680ACCGTGCTGAGACCGTGCTGACACCGTACCGAGACCGTGCTGAGDesign primers
2368467TTTGCC-GTTGCC-GTTGCC-GTTGCCDesign primers
2370326CCTAGGCCCTCGGCCCTAGGCCCTAGGCDesign primers
2429575AGGCCCT-AGGCCCT-AGGCACT-AGGCCCTDesign primers
2437060CTCCGCCTTCGCCTCAGCCACCGCDesign primers
2456237CAG-CAC-CAG-CGC-CAC-CAC-CAC-CACDesign primers
2457483TTGCTA-TGGCTG-TGGCTA-TTGCTG-TTGCTT-CGGCTG-TGGCTG-TGGCTGDesign primers
2457536GTTGCTATTGCT-GCTGCTGTTGCT-ATTGCTGTTGCT-ATTGCTGTTGCT-ATTGCTGTTGCT-GTTGCTGTGGCT-GTGGCTGTGGCT-GTTGCTGTTGCC-GTTGCCGTTGCT-GTTGCTGTTGCT-GTTGCTGTTGCTDesign primers
2465529GAGATGGCGATGGAGAAGGCGATGDesign primers
2467258ACTGCA-ACGGCA-ACGGCA-ACTTCA-ACTTCA-ACTTCA-ACGGCA-ACAGCA-ACTTCA-ACGGCA-ACAGCA-ACTTCA-ACGGCA-ACGGCA-ACTTCA-ACGGCA-ACTTCA-ACGGCADesign primers
2603985CACCGCCACCCCCAACGCCACCCCDesign primers
2612046CAACGA-CAACCG-CAACCG-CAACCG-CAACAG-CAACCG-CAACCG-CAACCGDesign primers
2612095AACAGC-AACAGC-AACAGC-AACCGC-AACAGC-AACAGC-AACAGCDesign primers
2617442GGGCGGATCTGCGGGAGGCCGATCTGCGCGGCGCGAAGCTGCGGGDesign primers
2658723GG-CG-AG-GG-TG-AG-GG-AG-AG-GG-CG-CGDesign primers
2671331CCGAAC-GGCAAC-GGCAAC-GGCAAC-GGCAAC-GGCAAC-GGCAAC-GGCAAC-GGCAACDesign primers
2792030CAAATCACCACAAACTCACCACAAACTCACCACDesign primers
2888763TTCGTTTGTCATTCCC-TTTGTCCGTCATTCCC-TTTGTCCGTCATTCCC-TTCGTTTGTCATTCCCDesign primers
2912012CGCCCCCGGCCCCGCCTCCGCCACDesign primers
2919416CGTCACCGGCACCGTCAACGTCAADesign primers
2919466CCATCACCCTCACCAGCACCACCADesign primers
2920027CCGCCACCGCCGACGCCACCGGCADesign primers
2922092CAACCT-CAACCT-CAACGT-CACCCTDesign primers
2923479GCCACCACCACCGCCTCCGTCACCDesign primers
2932763CCCTAGG-CTCTAGG-CTCTAGG-CCCTAGGDesign primers
2933687TTGCCG-TTGCCG-TTGCGG-TTGCCGDesign primers
2933712TGCTCT-TGCCGT-TGCCGT-TGCCGT-TGCCGT-TGCCGTDesign primers
2938845CACTAGG-CTCTAGG-CTCTAGG-CTCTAGG-CCCTAGGDesign primers
2938881CCTGAAC-CCTGAAC-CCTGAGC-CCTGAAC-CCTGAAC-CCTGAAC-CCTGAAC-CCTGAAC-CCTGAAC-CCTGAACDesign primers
2939556TGCGGTTGCGGTTGCGGTTGCCGTTGCGGTTGCCGCDesign primers
2939595CGCCGT-TGCCGT-TGCCGT-TGCCGT-TGCCGTDesign primers
2940241AGTTGC-CGTCGC-CGTTGC-CGTTGC-CGTTGC-CGTTGCDesign primers
2940296GTTGCC-GTTGCC-GTTGCC-ATTGCC-GTTGCC-GTTGCC-GTTGCC-GTTGCC-GTTGCC-GTTGCCDesign primers
3003303GCTTTT-GCTGTT-GCCTTT-GCTTTT-GCTTTT-GCTTTTDesign primers
3066051CCGCACCCTTCTTCGCGGCAATCTTCTTCGCCGGAGCCTTCTTCGDesign primers
3071121CCCCAGCGCCAGCCCCAGCACCAGDesign primers
3071693GCCGTT-GCTGTT-GTCGTT-GCCGTT-GCCGTT-GCCGTTDesign primers
3118324CCCGCGGCTCCCACGGCTCCCACGGCTDesign primers
3141278CTGGCG-CTGGCG-GTGGCG-CTGGTGDesign primers
3141985GAATGGCAACGG-CGGCGGCAACGG-CGGCGGCAACGG-CGGCGGCAACGG-CGGCGGCAACGG-CGGCGGCAACGGDesign primers
3145047GCGCCG-GTGCCG-GTGCCG-CCGCCGDesign primers
3152859GCCTAGAGACCAGG-GCCTAGAGACCAGG-GCCTAGAGCCTAGGDesign primers
3167995TTGAGAA-CTGAGAA-CTGAGAA-CTGAGAADesign primers
3222955AC-CC-GC-AC-CC-AC-CC-CC-GC-AC-CC-GCDesign primers
3233461GGCCCACACCACAACCGTCCCCTCACCACAACCGTCCCCTCACCACAACCGDesign primers
3280727TTTGCT-TTTGCT-GTTGCT-TTTGTTDesign primers
3294382CGCACCCGCAGCCACACCCGCCCCDesign primers
3318978GCAGGGTGCAGGTTTCAGGGTGCAGAGTDesign primers
3388692TCCCTAAGCCCTGAACCCTAAGCCCTGTTCCCTGAACCCTGADesign primers
3390429TCCCTGATCCCTGTTCCCTAATCCCTGADesign primers
3405361CTCGTC-CTTGCC-CTTGCC-CTTGCC-CTTGCC-CTTGCC-CTTGCC-CTTGCC-CTTGCC-CTTGCC-CTTGCC-CTTGCC-CTTGCC-CTTGCC-CTTGCC-CTTGCC-CTTGCC-CTTGCC-CTTGCC-CTTGCCDesign primers
3409413GAGGGATCAGGGATTAGGGATCAGGGATDesign primers
3423291GCGGTCTTCTTGGCAGCAGCCTTCTTGGCCGGAGCCTTCTTGGCAGCGGTCTTCGTCGCADesign primers
3458375CCTGATC-CCTGATC-CCTGTTC-CCTGCTCDesign primers
3488337TGGTTAGTGATTAGTGGGTAGTGCTTAGDesign primers
3552400CTAGGCCCTAGTCCCTAGGCTCCAGGCCDesign primers
3593432TTGCGGTTGCTGTTGCCGTTGCAGDesign primers
3747106TAAAAAGGCCGTCATAC-ATAAAAGGTCGTCATAC-GTAAAAGGTCGTCATAC-GTAAAAGGTCGTCATAC-GTAAAAGGTCGTCATAC-GTAAAAGGTCGTCATACDesign primers
3747263TTGCAC-TTGCCG-TTGCCG-TTGCCG-TTGCCG-TTGCCGDesign primers
3825319CCCTGGCACTGGCTCTGGCACTGGCTCTGGDesign primers
3836071CCTCCGCATCCGCCTCGGCCTCGGDesign primers
3858713TCAGGGCTCAGGGATAAGGGCCCAGGGCDesign primers
3861884CTTGGTGTTCTTCTTGACGTTCTTTTTGGTGTCCTTDesign primers
3889094CTAGTCCCTAGGCCCTAGTCCCTAGGCCDesign primers
3953314CCACCCCCGCCACGCCCGCCACCGCCGDesign primers
3985695CGGGTGAGGGTGCAGGTGCTGGTGDesign primers
4020617CATCAACAGCAACATCACCAACAADesign primers
4059116GCTGCC-GTGGCC-GTGGCC-GTGGCC-GTTGCC-GTTGCC-GTTGCC-GTTGCC-GTTGCC-GTTGCC-GTTGCC-GTTGCC-GTTGCC-GTTGCCDesign primers
4063530TAGCTGATAGCTCATAGCTCATAGCTGGDesign primers
4065924AGCAGCCGCAGCAGGAGCAGCAGCDesign primers
4124439GGTGGAGGCGGTGGGGGCGGAGGAGGCDesign primers
4134279CTTGCC-GTCGCC-GTCGCC-GTCGCC-GTTGCC-GTTGCC-GTTGCC-GTTGCC-GTTGCC-GTTGCCDesign primers
4152337CACCAACACCACCACCCACCCCAADesign primers
4153496CACCAG-CACCAG-CAGCAG-CACCGG-CATCAGDesign primers
4201247GGGGTGACGGTCGTGATGGTAAGGTAACGGTCGTGATGGTAAGGTAACGGTCGTGATAGTDesign primers
4245855GCAGGGAACAGGGATCAGGGAACAGGGADesign primers
4257412AAAGCAGTGGCGAAGAAGGCAGTGGCGAAAAAGGCGGCGGCGAAGDesign primers
4296513AACGGCAACGACAACGGCAACAGCDesign primers

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