Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Clostridium acetobutylicum EA 2018

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
15146	ATAATAATAGTATTAATAATAATT	Design primers
55096	TATAAATTTAAAAAAATTTAAATAATTTTA	Design primers
73184	TATAAATGCTACAAATGCAATAAATGC	Design primers
244530	ACAAGT-ACAAAT-ACAAAT-ACAACT	Design primers
261601	AAAGAAAAAGATGAAGAAATAGAA	Design primers
303106	ATAATGTAAAAATAATGTTAATAAAATGTGAAA	Design primers
367970	AAAAAAATAAAAACAAAAAGAAAAC	Design primers
371503	AATAATAGC-AATAATAGC-AATAATATC	Design primers
405801	ATGCAGTAAAAAGCAATAAAATGCAGTAAA	Design primers
419611	GTATATATAGTATATATGGTTTATATA	Design primers
456522	AGCAGT-AGCAGT-AGCGGT-AGCAGG	Design primers
508255	GAAAATCTTAGAAATTCTAAAAAAATCTTA	Design primers
521150	TA-AA-TA-TA-AA-TT-TA-AA-AA-TA-AA-AA	Design primers
597922	GAAAGAAAAGGAAATGAAAAGAAAA	Design primers
725587	TTTTT-ATATT-ATTTA-ATATT-TTATT-TTATT	Design primers
756474	TTATATATTATGTATTATATCATATATA	Design primers
783306	AATTAAAATTAGAACTAAAATTAC	Design primers
787894	AGC-AGC-AGC-AGC-CGC-AGC-AGC-AGC	Design primers
810441	TAAAATTGTATATATTTGTATTAAATTATA	Design primers
816667	AAATAATACACCAACTACAGGTGG-AAACACAACACCAACTACAGGCGG-AAACACAACACCAACTACAGGTGG-AAACACAACACCAACTACAGGTGG-AAACACAACACCAACTACAGGTGG-AAACACAACGCCAACTACAGGTGG-AAATACAACGCCAACTACAGGTGG-AAATACAACACCAACTACAGGTGG-AAATACAACGCCAACTACAGGTGG	Design primers
817334	GGAACAAATACAACACCAACTACAGGCGGAAATACAACACCAACTACGGGTGGAAATACAACACCGACTACA	Design primers
823149	ATAAATAATAATAATTATTAGTAAATAATA	Design primers
824192	ATAATTGGTAATTGAGAATTGATAATAG	Design primers
1084476	TAAAAAATAATAAATAAGAATAAAAAAGCA	Design primers
1182672	TTCTTCTTCTACTTCTTCTTCTAC	Design primers
1187045	AAATCAAACCAAATACAATCAAACC	Design primers
1210003	TATTGGAGCAATGATTGGAACAATGATTGGAACAAT	Design primers
1212157	AAGTATAAAA-ATGTATAAAA-ATATATAAAA	Design primers
1278156	GTTATACTATTTGCT-TGAATACTATTTGCT-TGAATACTATTTGCT	Design primers
1371853	TAATTTTTAGTGATTTTAAGTGAATTTTAG	Design primers
1419610	AAAATAAAAGTAAAAGTAAAAATT	Design primers
1421027	TTGGATTTGGTTTTAGATGTGGAT	Design primers
1452481	AAAATAAACTAAGATAAATTAGAATAAAGTAAAAT	Design primers
1458143	TTATATAATTATATTATTTTATAA	Design primers
1474974	TAATTCGTGTAAATCGTGTAATTCATG	Design primers
1497518	CTTCATCTA-AATCATCTA-AATCATCTA-AATCATCTA-AATCATCTA-AGTCATCTA	Design primers
1646655	ATAAAAATCAAATTAAAAATGAAA	Design primers
1648828	TAATAATATTAATAAAAATAATAC	Design primers
1663548	AGTTTTATTAAGTTGTCTTAAGTTTTCTTC	Design primers
1713528	TTATTTATTATAATTTATTGTTTTATATTA	Design primers
1727065	TGAAATATAATAAAAAATAATAAAAAATAA	Design primers
1746167	GAAATGTTATAAAATCTTATTAAATGATAT	Design primers
1752621	AAAATAATTAAAAAATCAATAAATAGTAATTAA	Design primers
1811304	TATTATTACTATCATTATTATTAA	Design primers
1859616	AGAAGATGAAGAAGAAGAAGAATA	Design primers
1923310	TAATATAGTATAATTTAAGATAATA	Design primers
1992192	AAAACCTTTATAAAGCTTTATAAACCCTTA	Design primers
2008084	ATTGATATATTGATTTATTGATAC	Design primers
2033021	CTCCTGCTGCTGCTCCTGCTTCTGCTCCTA	Design primers
2096382	TTTAATGTTAATTTTTATTTTAAT	Design primers
2159115	TT-TT-TT-TT-CT-TT-CT-TT-AT-TT-AT-TT-T	Design primers
2212710	TCATTTATATTATTTATATCATTTAAA	Design primers
2214685	TTGTTATTCTTTTTCTTCTTCTTTTTTTTCTTCTTT	Design primers
2224236	TTTGCACCACTTTACACCACTTTAAACCAC	Design primers
2275394	AAGAAAAAAAAGAATAAATAGAAAAAA	Design primers
2297249	TATATTTCTTTATTTTTTTTTATATTTTTT	Design primers
2307632	TTCATTATCAA-TTCATTATCAA-TTCTTTATTAA	Design primers
2355299	AAGTACAAGTTCAAATACAAGTAG	Design primers
2391789	TTTATTATATTTTTTTCTATATTAT	Design primers
2406230	ACCTACTCCTACACCAACACCTTC	Design primers
2406306	ACGAATACAAATACTAATACTAAT	Design primers
2475541	CTAGTTCTTGTTATAGTTCTTGTT	Design primers
2532192	GTGACATTTTGCGATATTTTGTTTCATTTT	Design primers
2556407	ATAGCAATAAATAAAAATAAATAGAAATAT	Design primers
2640541	TCTGTTGGTGTTGTTCCTGTTGTTGTTGTTCCTGATGGTGTTATT	Design primers
2640588	TGTTGTTGTTCCTGTTGGTGTTATTACTGTCGTTGTTGTTCCTGCTGTCGTTGTTCCTGC	Design primers
2734587	TTCTTTTTCTTCTTATTTTTCTTA	Design primers
2746878	TAATATATTATACTATAAAATAACA	Design primers
2840385	TA-AT-AA-AT-AA-AT-CA-AA-AA-TA-AA-TT-AT-AA-AT-AG-A	Design primers
2851883	ACGACTATGATCATGATCACGACCATGATTATGACCACGACCATGATTATGACC	Design primers
2852064	TGGACAAATGGGTCCTGGCTACGGTCAAATGGGTCCCGGTTACGGTCAAATGGGCCCTGGTTA	Design primers
2910947	AATAATCACAATAATAACCATAATCAC	Design primers
2911313	AGGAGA-AGGAGA-AGAAGA-AGGAGA-AGAAGA	Design primers
2953396	TTTAA-TTTAA-TTAAA-TTTAT-TTTAG	Design primers
2986152	ATTTCAACTTCACTTTCAATTTCA	Design primers
3028195	TTTCTTTTATTATCTCTTCTTTACT	Design primers
3117359	CATCTA-TATCTA-CATCTA-CATCTA	Design primers
3121550	TCTTCTTCTGCTTTTACTTCTGCTTTTACTTCTGCT	Design primers
3175143	AACGCTAACAAAGCTAACAAAGCTAAC	Design primers
3180865	GCTTTTGAAATCCTTTGAAAACTTTTGAAA	Design primers
3191488	TGTTTATTTTTATATTTATTTTTA	Design primers
3282468	CAGCTGCTGCACCTGCTGCACCTGCTG	Design primers
3350707	TCTTCATCTTTATCTGCAGCTTCA	Design primers
3363754	CTTTTTTATTTTTTCTTTTCTCTTTCTTCTTTTTA	Design primers
3399323	TTTAATATTTTCATATTTTAAAAT	Design primers
3464693	ATATTTTACTATTTTATTATTTTA	Design primers
3472952	GTAACCTTCTTTTTCAAAGCCTTCTTTTTCAAAGCCTTCTTTTTC	Design primers
3478179	TCTTGCTACTGTTGCTACTCTTGCTAC	Design primers
3478227	TCCTACTGTTGCTACTGTTCCTACTGC	Design primers
3478278	TCTTGCTACTGTTGCTACTCTTGCTAC	Design primers
3478325	CTCCTACTG-TTCCTACTG-TTCCTACTG	Design primers
3502732	AACAAT-AACAAT-AATAAC-AACAAC-AAC	Design primers
3502795	AAC-AAC-AAC-AAT-AAT-AAC-AAT-AAC-AAC-AAT-AAC-AAC	Design primers
3502833	AAACAACAACAACAACAATAACAA	Design primers
3627176	TTAGTATTAGCATTAGTCTTAGTA	Design primers
3695442	CTTTGTATTATATTGTATTACTTTGTATTT	Design primers
3696776	ATATACTATAATACAATATAATACA	Design primers
3708569	ATAATTATAACTGTAATTATTATT	Design primers
3788433	AA-AA-AA-TA-AA-AA-GA-TA-TA-AA-AA-TA	Design primers
3938476	TAACTTTAATTTCAACTTTATCTT	Design primers
3938614	TTTTTCTTGTTCTTTTTATTCTTC	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

15146

ATAATAATAGTATTAATAATAATT