Microsatellites database

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
14745	GGGCCAGGAGGAGGGCGAGGAGGTAGGCAAGGAGGA	Design primers
25005	AGGGGGAGGTGGGGGAGGAAGGGGAGG	Design primers
42815	CTGCCCCTTCCCCTGCCCCTCCCC	Design primers
77087	CCACCCCCTCCCCCACCGCCACGC	Design primers
104798	TCCTCCTCCTCTTCCTTCTCCTGC	Design primers
133357	CCCTATCGGAAGACTTGGGGAATTGGTATCGGAAGACTTGGGGAGTTTCTATCGGAAGACTTGGGGAGT	Design primers
151465	AGG-AGG-CGG-AGG-AGG-GGG-AGG-CGG	Design primers
163855	GG-GC-GG-GG-GT-GG-GG-GA-GG-GG-GC-GG	Design primers
164922	GGGAGGGGGTGGGGGTGGGGGAGA	Design primers
166058	TCCTGG-ACCTGG-ACCTGG-CCCTGG	Design primers
188462	ACC-ACC-AAC-ACC-ACC-ACC-AAC-ACC	Design primers
285222	CAGGGCCAGGCCCAGGGCCAAGGC	Design primers
298753	CCGCCCCACCCCGGCCAGCCCCTCC	Design primers
324977	TCTTCC-CCTTCC-TGTTCC-TGTTCC-TGTTCC	Design primers
327632	GAG-GAG-GAA-GAG-GAG-GAG-GAG-GAG	Design primers
331977	GCACCGGGAACACCGGGAGCACCGGGG	Design primers
343505	AGGGCCAGGGCGGGGGCCAGGGCC	Design primers
374889	CCTCCACCTCCCCCCCCACCTCCT	Design primers
385159	AGGGCCAGGGCGTGGGCCAGGTCC	Design primers
444932	CCAGGGGCAGGGCCAGGCTCAGGG	Design primers
464577	TGGCCGAGGCCGTGGCCTTGGCGG	Design primers
466467	TGGGCCTCGGCCAGGGCCTCGGCC	Design primers
537699	CGGGCTCGGGCAGGGGCTCGGGCC	Design primers
582138	GGGGCCAGGGCCCGGGCCAGGGCC	Design primers
647387	TGGCCC-TGGCCC-GGGCCC-TGGCCA	Design primers
677444	GGGCCAGGGCTAGGCCCAGGGCCA	Design primers
703843	GGGCGGGGGTGGGGGCGGGGGAGGTGGCGG	Design primers
780805	GCCCAGGAGGCCCTGGAGGCCCTGGAG	Design primers
781386	ATGGCGGCGTTGGCGGCGCTGGCGGCG	Design primers
804353	TGGGGCTGGGGGTGGGCCTGGGGG	Design primers
826008	ACG-AGG-AGG-AGG-AAG-AGG-AAG-AGG	Design primers
829102	GGCCCTGGCCCGGGCCTTGGTCCT	Design primers
830046	CTCTTCCTCCTCCTCCTCCCCTTC	Design primers
849622	AGGCCCAGGGCCAGCCCCAGGGCC	Design primers
855410	GCGGGCGGCCCTGGAGCGGGCGGGGGTGGAGGGGAAGGCCCTGGA	Design primers
867807	GGTGGAGGGGGAGGGGGAGGTGGC	Design primers
879987	AGGGCCTGGGCCCGGGCCAAGGCC	Design primers
896669	GCCAGGGCCACGGCCAGGTCCAGG	Design primers
908493	CCTGGGCCGGGGCCTAGGCCTGGACCTGGC	Design primers
914539	GCCCTATCCCTAGCCCTGGTCCTA	Design primers
960654	GGACCTGGACCGGGCCCTGGGCCT	Design primers
964007	AGGCCGAGGCGGTGGCCGAGGCCC	Design primers
974560	CTCCACCTCCAGCACCACCTCCCC	Design primers
980985	TCCTGGGCCTGGCCCTGGTCCTAG	Design primers
985173	CCTGGGCCAGGGCCCGGGCCAGGG	Design primers
993698	AGGAGGCGGAGGAGGAGGAAGAGG	Design primers
1019471	GGGCCAGGGTCAGGGCCTGGGCAA	Design primers
1043487	GGCCCGGGCCAGGGCCAGGGCCCT	Design primers
1082382	GCCCAGGCGGCGCAGGCGGGCCAGGCG	Design primers
1087149	AGGTGGGGGTGGAGGTGGTGGTGG	Design primers
1097979	GGCCCTGGACCTGGCCCTGGCCCG	Design primers
1098132	CCTGGGCCTGGCCATGGGCCTGGCCATGGG	Design primers
1148898	AGGGGGAAGGGGAGGGGAGGGGGG	Design primers
1160202	CCTGGCCCAGGCCCTGGACCGGGCCCAGGC	Design primers
1162434	AGGGGG-AAGGGG-AGGTGG-AGGTGG-CGGGGG	Design primers
1163038	GGCCAA-GGCCGA-GGCCGA-GGCCCA	Design primers
1179688	TTGGCGATGGCGCTGGCGTGGGCG	Design primers
1182294	CCCGGGCCACCCGGGACACCCGGGCCC	Design primers
1232197	CCACCCCCGCCACCACCGCCTCCCCCG	Design primers
1234693	AAGGGGAAGGGGGAAAGGAGAAAGGGCA	Design primers
1235923	CGGCCCGCTTCAGGGCCCGCTCCAGGGCCGGCTTCA	Design primers
1248655	AGGCCCAGGACCAGGCCCAGGCCG	Design primers
1253529	GTGGAG-GTGGAG-GGGGAG-GTGGTG	Design primers
1263128	AGGTCCAGGCCCAGGGCCAGGTTC	Design primers
1272184	GC-GT-GG-CC-GT-GG-GG-GT-GG-GC-GG-GG	Design primers
1313610	CCGTGG-CCGTGG-CCCTGG-CCTTGG	Design primers
1318171	TGGCCTTGGTCTTGACCTTGGCCC	Design primers
1382660	CGGCCTCGGCCAGGGCCTCGGCCA	Design primers
1385978	CCACCTCCTCCTCCCCCTCCACCA	Design primers
1404348	GTGGCCCTGGCCTTGGCCGAGGCC	Design primers
1421101	GCCTCCACCTCCGCCTCGGCCTCG	Design primers
1436606	CGCCAC-CGCCAC-CGCCGC-CGCCGC	Design primers
1452965	GGGCCAGGGGCAGGGTCAGGGCCG	Design primers
1481025	GGGCCT-CGGCCT-TGGCCT-TGGCCT	Design primers
1485830	CCTGGA-ACTGGA-CCTGGA-CTTGGA	Design primers
1487307	CCCCCCACCCCCCACCCACCTCCCC	Design primers
1503689	GCCCTGGCCCGGGCCCTGGCCCGG	Design primers
1534859	GCCGACACCGACTCCGACCCCGAC	Design primers
1565200	TGGCCC-TGGCCC-AGGCCC-TGGGCC	Design primers
1607265	CTTCCTCCTCCTCTTCCCCCTCCT	Design primers
1610871	TGGGGCGGTGGGGTGGTGGGGCGC	Design primers
1639239	GCC-ACC-GCC-TCC-GCC-GCC-CCC-ACC	Design primers
1766258	CCCCTGGGCCCCCTGGCCCCCCTGGTC	Design primers
1790060	CGGGGCAGCGGGGCCGCGGGGAAG	Design primers
1806849	AGGCCAAGGGCAAGGCGAAGACCA	Design primers
1816991	TGGCCCAGGCCCTGGGCCTGCCCC	Design primers
1827452	CCCCGCCCCCTCCCCCGCCCCCGG	Design primers
1859074	GCCCTGGCCCGGGCCCTCACCCTG	Design primers
1865877	CGAGGCCCGGCTCAAGGCCGGGCTCATGGCCCGGCT	Design primers
1870991	CCTGGCCGGGCCTGGCCCGGCCAGG	Design primers
1877499	AGGCCCTGGCCCAGGCCAAGCCCC	Design primers
1900800	CCCCACCCTGCCCCAGCCCGCCCCGCCCTT	Design primers
1915594	GGCCTGGGCCAGGGCCTGGGCCTC	Design primers
1936709	CCTGGCCTTGGCCCAGGCCCCGGC	Design primers
1944661	TGGCCC-TGGCCC-GGGCCC-TGGCCC-TGGACC	Design primers
1980670	CCAGGGCCCGGGCCAGGTCCAGGA	Design primers
1990081	TGGAGGTGGCGGTGGAGGTGGAGC	Design primers
2002779	CCCGGTCCCGCTCCAGGTCCCGGG	Design primers
2020012	CCCGGGCCCCCCGGCCCGCGGGCC	Design primers
2028815	TGGCCCTGGGCCTGGTCCGGGCCC	Design primers
2032951	GCGGAGCTGGAGGGGGAGCTGGTGGTGGACCTGGAG	Design primers
2057450	CTCCTCCTCCTTCCCCTCCTCCTC	Design primers
2082222	CCCCGCCACCGCCCCCGTCCCCCC	Design primers
2135771	CCAGGGCCTGGGCCAGGGCCTGGGCCAGGT	Design primers
2147303	CCAGGCCAAGGCCCTGGCCAAGGC	Design primers
2149706	CAGGCC-CAGGCC-CAGGAC-CAGGGC	Design primers
2152255	AGCCCTTCAGCCCTTAAGCCCCTC	Design primers
2157563	GGATCT-GGATCT-GGACCT-GGACCT	Design primers
2197791	CCGCCACCCCCACGGCCACCGCCA	Design primers
2227422	CCCCCACCACCACCCCCACCCGCA	Design primers
2232797	GCCTGGCCCTGGGGCTGGCCCTGG	Design primers
2233288	CTCCACCTCCCCCTCCACCTCCCC	Design primers
2237804	CCCTGG-CCCTGG-GCCTGG-CCCTGG	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

14745

GGGCCAGGAGGAGGGCGAGGAGGTAGGCAAGGAGGA

Microsatellites /Tandem Repeats database

Genome: Thermus sp. CCB_US3_UF1