Microsatellites /Tandem Repeats database

Genome: Clostridium difficile BI1

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
22676TATAAAAAATTAAAGAAAATTCTAAAAAAADesign primers
53706TAAGGATAAAGATAAGGATAAAGADesign primers
73321ATGGTAATTGTATTGGTAATGGCADesign primers
83830AATAATAAACTAATAAAATATTAADesign primers
115862GAAACGATAGAAGAGGAAATGACAGAAGAGGAAATGATAACAGAGDesign primers
174871ATGAATA-GATTATA-GATTATA-GATTATA-GATTATA-GATTATA-GATTATA-GATTATA-GATTATADesign primers
224887AAATTAATTAAAAGTTATTATAATAAATTADesign primers
237094TTAAAAATAAAATTAAATTTAAAADesign primers
282368TATTTATAGTTATAATTATACTTADesign primers
348368TAAAAATTATAAATTAATAATAAAAAATDesign primers
425265TATAGATAAAGATATACATATAGTDesign primers
436904TAAGATAAAAAATGATAAAATAAGAAAATADesign primers
472902TTTAAATATACTTAAAAATATATTAATATADesign primers
515701TACTTATATTTAATTTTATTTACTGATAATDesign primers
541456AACCTTAATCTTAATCTTATCCTTDesign primers
565086TAAGTAAGATGATAACAAATGAGATGATAATAAGTAAATTGATATDesign primers
593380TTTTTAAA-AGAGTAAA-AGAGTAAA-AGAGTAAA-AGAGTAAA-AGAGTAAA-AGAGTAAA-AGAGTAAA-AGAGTAAA-AGAGTAAA-AGAGTAAA-AGAGTAAA-AGAGTAAA-AGAGTAAA-AGAGTAAADesign primers
593553TAGATTACTAAATTACTAGATTATDesign primers
597998ATTTAATATTTGTTTAATACTTATTAAATATTTDesign primers
604165ATTATTTTATATAATAGTATAATATDesign primers
605827AATTATAAATAGGATGT-AAAAGTAAATAGGATGT-AAAAGTAAATAGGATGT-AAAAGTAAATAGGATGT-AAAAGTAAATAGGATGT-AAAAGTAAATAGGATGT-AAAAGTAAATAGGATGT-AAAAGTAAATAGGATGT-AAAAGTAAATAGGATGT-AAAAGTAAATAGGATGTDesign primers
625286TTATATTG-GTATATTG-GTATATTG-GTATATTGDesign primers
645401TATCTAGTTTATATATCTAGCTTATGTATGTAATTTATATATGTAGTTTATADesign primers
653739ATACTGCCTTGCATATCGCTAATAGTACCTTGCATATCGCTAATAGTACCTTGCATATAGTTADesign primers
670104AGTACTTAAGTATTTAAGTACTAADesign primers
680278ATATTAAATATTAGATAATAAATATTTADesign primers
687403TTTTAA-GAGCAA-GAGCAA-GAGCAA-GAGCAA-GAGCAA-GAGCAA-GAGCAA-GAGCAA-GAGCAA-GAGCAA-GAGCAA-GAGCAA-GAGCAA-GAGCAA-GAGCAA-GAGCAA-GAGCAA-GAGCAA-GAGCAA-GAGCAA-GAGCAA-GAGCAA-GAGCAA-GAGCAA-GAGCAA-GAGCAA-GAGCAA-GAGCAA-GAGCAA-GAGCAA-GAGCAADesign primers
703386ATAATCTAAAT-ATAATCTAAAT-ATAGTGTAAATDesign primers
703443GATTAAGTATGAATTAAGCATGGATTAAATATADesign primers
718107AAATAATAAAAAATATTAATAAACAAAAAADesign primers
753410AAAATAAATTAAAACAATATAAAAADesign primers
759124TGAAGATGCAGATGAAGTTGAAGGDesign primers
764597CTTTAAGTGATAGATATTT-AATTAAGTGGTAGATATTT-AATTAAGTGGTAGATATTT-AATTAAGTGGTAGATATTT-AATTAAGTGGTAGATATTT-AATTAAGTGGTAGATATTT-AATTAAGTGGTAGATATTT-AATTAAGTGGTAGATATTT-AATTAAGTGGTAGATATTT-AATTAAGTGGTAGATATTT-AATTAAGTGGTAGATATTT-AATTAAGTGGTAGATATTTDesign primers
766851ATGTATTGATTAAGTATTTATTAAGTATTGAATDesign primers
767490CAATTAGCAAAGAATTAGCAATCAATGAACAAADesign primers
789481AA-TG-AT-AT-AT-AA-AT-AC-AA-AT-AA-TG-TA-TA-AA-TA-TA-AA-TG-AT-GT-AT-AA-AT-AT-ADesign primers
792514ATGGCCTCAAGTATTTCT-ATAGATTCAAGTATTTCT-ATAGATTCAAGTATTTCT-ATAGATTCAAGTATTTCTDesign primers
792956TAAACTTAAATGAAATTAAACAAACTTTAADesign primers
804618AGAGTTTAAAAGAGTTTAACAGAGTGTATADesign primers
983255ATAACAAAACATGATAAAACATAATAAAACDesign primers
1075889ATAAAA-ATAAAA-ATACAA-ATAATADesign primers
1083349ATTTGGTGGATTTAGTGGTTTTGGTGGDesign primers
1107740ATTGTGTG-TTTGTGTG-TTTGTGTGDesign primers
1107861TTTTTATATATTACTTATATATTATTTATATTTDesign primers
1124353GA-GA-AA-AA-GT-GA-AA-AA-GA-GA-AA-AADesign primers
1151353TGTAATCCATGTAACCCATGTAATCCADesign primers
1183200ATAATAAAATTTAATATAATATAAADesign primers
1188548TTTATATACAATTATATAAATTTATAAAAADesign primers
1190438ACTTCTTTTTCTTCTTTTTCTTCTTTTDesign primers
1230044AAAGA-AAAGA-CAAGA-AGAGA-AAAAADesign primers
1243011AAAAAACGTAAAAAAATTTATAAAAATGTADesign primers
1316335AGAAGAAGATGAAGAATATGAAGADesign primers
1331467TTTAATTTATTTAATTTTATTAATTTADesign primers
1337826AAGAAAATAATAAAGAAGATAAAAAAGAAAATAGTADesign primers
1439198AAAAAAATAAAAGAAAAAGAAAAAGDesign primers
1533415ACTTTATAATTAAACAACTTGTAATTAAACAACTTGTAATTAAACAACTTATAATTAAATDesign primers
1539291AAAATAAGAATAATCAAAATACAAACAATCAAAATCCAAATAATCDesign primers
1561740ATTTTTTTATTATTTTATTTTTCTDesign primers
1575127AAATTATTTAAAATATTTAAATTAATTDesign primers
1619135GCAATTTATTATTTTTTAGGTAATTTATTACTTTTTAGGTATTCTATTATTTTTTAGDesign primers
1626265AATATAAAGATAAAAATAATTATADesign primers
1640835TTTGTAATATTTTTGAATATTTTCTAATTTDesign primers
1657371TAAAAAAATCAAAAAATAAAATAADesign primers
1768319ATTAAAAAAA-CATAAAAAAA-CATAAAAAAADesign primers
1787910GAATTAAAAAGAAATATAAAGAATTATATADesign primers
1798026TTGTATTATTATATTATTGTATTADesign primers
1818755TATAAAACAACTTAAAACAATATAGTACAADesign primers
1818872AAAGTATGTAAAATCTATGTAAAAAGTAAGAAADesign primers
1819911TGGTGAAGGTGATGGAGATGATGADesign primers
1821222GCTATAGCAATAGGTATAGCAATADesign primers
1976025ATATTAAAATATTATAATATTACADesign primers
1980496ATTATA-ATTATA-AATATA-ATTTTADesign primers
1999186TAAAAATAACAATTATAATATATAAATAGAAAGTATAATATATAAATAGCAAGTATAATADesign primers
2003509ATATA-ATATA-ATGTA-ATAAA-ATATADesign primers
2056017ATTGTTGTTGCAATGATTGTGGTTGTAAAGATTGTTGCTGTAATTDesign primers
2097423GAAATATTTTAAAATATATTGAGAAATTTTDesign primers
2151889TTTTTTAATTTTTAAATTTTTTAADesign primers
2205624ATTAAATAAAATCTAATAAAATTAACTATADesign primers
2228069TATATTAATAATTATTAATATATCTCAATADesign primers
2239585TT-AT-CT-AT-AT-CT-TT-TT-CT-TT-AT-TTDesign primers
2241998TTATAAGTTTTCATAAGTATTTACATGTTTDesign primers
2264423TATTTTTTTAAATTCTTTTAAATTTTTTTTDesign primers
2278902TAATTTTCTCATTTATTTTCTCCTAAATTTTTTCATDesign primers
2288381CTTATTGTTTTTTATTTTTTATTATTGTTTDesign primers
2404317TATATTTAGATTTAAATTTACATTDesign primers
2425297AA-AT-AT-AT-AA-AT-AT-AG-AA-AT-AA-ATDesign primers
2473311CCTCATAAAATCCTTATTTTAATAAAATCCTTATTTTAATAAAATCCTTATDesign primers
2511391ATACATAATAAAACATAACAAAACATTATAAAACATAACADesign primers
2528049TTTTGATTTTTATTTTAATTTTTADesign primers
2571526GCTTTTGCTTCTTCTTTTTCTTTTDesign primers
2603252ATATAGTATAATACATTATATTATADesign primers
2606824TTC-TTA-TTG-TTA-CTC-TTA-TTT-TTA-TTA-TTA-TTG-TTADesign primers
2693966TTATTTTTATTATTCTTTTTATTTDesign primers
2720693TTTATTGTATTTTCTTTTAATTTATTGTATDesign primers
2779598ATTCTATTTTCTTCTAATTTATTCTTATTTDesign primers
2800572AATACAAAATAATAACAAATTATACAAAACDesign primers
2816939CTCTTC-CTCTTC-TTCTTC-TTCTTCDesign primers
2868461TT-TA-TT-TT-TA-TA-TT-TT-TA-TA-TT-TTDesign primers
2873590TATTTTTATTTGTATCTTGATTTTDesign primers
2873855ATTATTATTTTCATTATTATTGTTTTGATTGTTATTACTATCATTATTTTCATTTCCATTDesign primers
2898877CTTTTTATTAATTTTTTTTACTTTTTCTTTDesign primers
2899447TT-TT-TT-AT-TT-CT-TT-TT-TT-GT-AT-TT-TDesign primers
2922197TAAAATATATCAAAATATAATGATATATATDesign primers
2939160TACTAATAAACCTGATAACAATAAACCAGAGTCTAATAAACCTGADesign primers
3008246ATAATATTATTTAATCTAATTTAATDesign primers
3055686CTTTTTTGTAA-TCTTTTTGTAA-TCTTTTTGTAADesign primers
3073048AACTTATTTCTATCTTATTTTTGACTTATTTCTDesign primers
3076639AAATTT-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGCDesign primers
3082358TTTATCTTCATCTTTATCTGTATCDesign primers
3095544TGATTATTTTCTATTTATTTTCTCTTTATTTTCDesign primers
3102689TCTTTATCATTATTTTTATCTTGADesign primers
3102802ATTTTTATTTTCATCTTTATTATTDesign primers
3173508TGTTTTTAGTTGTATTTAATTGTTTTTATTDesign primers
3227131TTTTTTTATTTGTTTTTTATTGTTTDesign primers
3228352TTACCTTTACCAATACCTTTATCTDesign primers
3306141TTCTTTTGTTTTCATTTGTTTTCCTDesign primers
3384830TTATAATTAAAATTACAAATATAADesign primers
3424347TTTTATTTAAGCTTTTATATTTTTTAAACTTTTATATTTTTTAAACTTTTADesign primers
3428043ATTTATTTTAATTTATTTTAATTGADesign primers
3430844AA-AA-TA-TT-AA-AT-AG-TA-TT-AA-AA-AA-GA-TA-AADesign primers
3431550TTTTATGATATTTAATAATATTTTATGTTADesign primers
3456574TTCTTATTTAATACAAATTTCTTATTTAACATAGATTTCTTGTTTAATATAAATDesign primers
3481630AAATTTGAATTTAAAATTAAATCTDesign primers
3507076ATAATTATCATTATATTTAAAATTDesign primers
3519438ATAAATT-TTCTATC-TTCTATC-TTCTATC-TTCTATC-TTCTATC-TTCTATC-TTCTATC-TTCTATCDesign primers
3536737ATTATTATTATTTATATTGTTATTGTCTATCTTGTTATTATTTATDesign primers
3556432TATTGATTTTTTATTTCTTTATATTTTATTTATTAAATTTTTATTDesign primers
3556487TTTAATTTTATTTGGTTTTATTTAATTTTATTTAGTTTTTDesign primers
3586988TTATTTTAGTTTATATTAATTTATTDesign primers
3617319GTTGGACCT-GTTGGACCT-ATTGGACCTDesign primers
3617607GTTGGGCCT-GTTGGGCCT-GTTGGACCTDesign primers
3617797TTGCTCCCGTTGCTCCTGTTGCTCCTGDesign primers
3617932TTGCTCCCGTTGCTCCTGTTGCTCCTGDesign primers
3618022TTGCTCCCGTTGCTCCTGTTGCTCCTGDesign primers
3631903GCT-GCT-TCT-TCT-ACT-GTT-TCT-TCT-ACT-ACT-TCT-TCTDesign primers
3637805TT-TA-TT-TA-AT-TT-TT-TT-AT-AT-TT-TT-TDesign primers
3664843TGAATCTCCTGAATCACCTGAACCTCCDesign primers
3673546TACTGCTACTGGCACTGCCACTGCDesign primers
3697405ATATTATTATTAACATTAATTTTADesign primers
3734544TATTATTTTATATTATATAATAGTATTTTATAATADesign primers
3735191ACCTGTTGGGCCTGTTGGACCTGTTGCDesign primers
3735362TCCTGTTGCTCCGGTTGCTCCTGTTGGDesign primers
3735567GCTCCTGTTGCTCCGGTTGCTCCAGTTDesign primers
3735644TGCTCCTGTTGCCCCTGTTGCTCCTGTDesign primers
3735788TGCTCCTGTTGCCCCTGTTACTCCTGTDesign primers
3735819CCTGTTGCTCCGGTTGCTCCGGTTGCTDesign primers
3735928TTCCTGTTG-CTCCTGTTG-CTCCTGTTGDesign primers
3736025TGCCCCTGTTGCTCCTGTTGCTCCTGTDesign primers
3736208TCCTGTTGCCCCTGTTGCTCCTGTTGGDesign primers
3736295TGCTCCTGT-TGCTCCTGT-CGCTCCTGTDesign primers
3736493TGGACCTGTTGGACCCGTTGGTCCTGTDesign primers
3738165TTTATTCATT-CCTATTCATT-CCTATTCATTDesign primers
3806316TAATTTTTTTATTATTTCTTTAAAATTTTTATADesign primers
3825061TAATATTATTTAATATTCCTCAATAATATTDesign primers
3924101CTTCTTCTTCTTCCTCTTCTTCCTDesign primers
3924392ACTCTTCATATTCTTCATATTCTTCATDesign primers
4006855ATAAATATGAATTTAAATAGAAATDesign primers
4023878TAGCTATAGCAATAGATATAGCTGDesign primers

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