Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Treponema brennaborense DSM 12168

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
74903	AAAAAACGCAAAAAACGTGAAAAACGC	Design primers
97360	GGCAGCGAACGTACTGCCAACGAATGTACTGCCAGCGAACGTACTGCCAGCGAACGTGCC	Design primers
97441	ATAGATACGGCCGGCATAGATTCAGCCGGTATAGATACGACATGC	Design primers
164065	GAACAATTGAACAATCAGGCAATTGAACAATCGGGCAATTGAACAATC	Design primers
174802	GCCGCAAACGACCGCAGAAGCCGCAAAAGGCCGCGGAAGCCGCAAACGACCGCAGAAGCCGCAAACGACCGCAGAA	Design primers
193688	GCCGAACGGGCTGAACGGACCGAACGG	Design primers
201481	GCCGGCAGTTCAGTCGGCGGTTCAGCCGGCAGTTCG	Design primers
228536	GAAATAGCG-CAAACAGCG-CAAATAGTG-CAAATAGCG-CAAATAGCG-CAAATAGCG	Design primers
234250	GGCGAAAGCCGGAATTGCAGAAAGTCGGAATTCCGGAAAGCCGGAATT	Design primers
235204	TTTACCGATTTTTTACGGATATTTTATCGGTTT	Design primers
248911	CGCATAAATGCGCATAAATACGCGTAAACG	Design primers
264936	GATTTTTCCGCAGATGATTTTTCGGCGGAGGCCTTTTCGGCAGATGATTTTTCGGCGGAT	Design primers
271525	TCGGTTTCGGTGACGGTTTCCGTT	Design primers
286558	CGGTGTTCATAGTGGCGGTGTTCATCGTGGCGGCGTGCATAGCGG	Design primers
380708	GTGCATATCCGAACGTTCAGCGCATACCGGAACGTTCAGCGCATACCGGAACGTTCA	Design primers
404673	GCCGCCGCCGCTTCCGCCGCCGCG	Design primers
417661	CGACGTACTGTTTTCACGTTCA-AACCTTACTGTTTTCACGTTCA-AACCTTACTGTTTTCACGTTCA-AATCCTACTGTTTTCACGTTCA	Design primers
417762	TCACGCTCAAACCTTACGGCCGTGGTTCTCAAACCTTACGGCCGTGGCTCTCAAACCTTACGGCCGTGACGCTCAAACCTTACGGTCA	Design primers
433603	CTTCCGGACGGAACTGATATCGGTATGGACGGAACTGATATCGGTATGGACGGAACTGATATC	Design primers
445554	CGGAAATTGAACGGACACTG-CAACGATTGAACGGACACTG-CAACGATTGAACGGACACTG-CAACGATTGAACGGACACTG-CAACGATTGAACGGACACTG-CAACGATTGAACGGACACTG	Design primers
484694	GACCGTGCGTTCAGCAGACAACTGCGCGTTCAGCAGACAACTGCGCGTTCAGCAGAC	Design primers
484752	ACTGCGCGTTCAGCGGTCAGCTGCGCGTTCAGCAGACAACTGCGCGTTTAGCAGACA	Design primers
507106	AAAGCCTCGTGTCAGACGAGGAATCTGCGTGTCAGACGAGGAATCTGCGTGTCAGACGAGAAATCAGTGTGTCAGACGAG	Design primers
507187	AATCTGTATGTCAGACGAGGAATCTGCATGTCAGACGAGAAATCAGTGTGTCAGACGAGGAATCTGTGTGTCAGACGAGGAATCTGTGTGTCAGACGAGGAATCTGTGTGTCAGACGATG	Design primers
531944	GGGGCGCCGGTTTGCGCT-GATACGCCGGTTTGCGCT-GATACGCCGGTTTGCGCT-GATACGCCGGTTTGCGCT-GATACGCCGGTTTGCGCT-GATACGCCGGTTTGCGCT-GATACGCCGGTTTGCGCT-GATACGCCGGTTTGCGCT	Design primers
591104	CAGCGTTGGGCGCATACG-CAGCGTTGGGCGCATACG-CAGCGTTTACCGCATACG	Design primers
607292	CGCTATTTCCGGTGAGAGTGCTATTTCCGGCGAAAGTGCTATTTCCGGCGAAAG	Design primers
642298	CGCGGCGGAAAGCAACAGTGCAGCGAAAAGCAACAGTGCGGCGAAAAGCAACAG	Design primers
643605	TCTTCAAGCTCTTCGACGTCTTCGAGTTCTTCAACGTCTTCAATCTCTTCCGCG	Design primers
654321	GCGGCCGCCGTTCGCGGCCGCCGTTTGCAGTCGCCGTTCGCGGCTGCCGTTT	Design primers
658456	TTGTCCGATTCGGCACTGCCAGATTCGGCACTGTCCGATTCGGAA	Design primers
664844	TTTCAGGTTCAGTATCAGTTCCAG	Design primers
680360	CTTCAAAGTCCGATAAAACCGTAAAGTCCGATAAAACCGTAAAGTCCGATAAAA	Design primers
683824	CGGCGGTAGCGGCTGGCAATCTGCAGTAGCTGCTGACAATCTGCGGTAGCGGCTGACGAT	Design primers
706915	GCGTCCGCCGGGTCCGGTGTTTCCGCTGGGTCCGGTGTTTCCGCCGGGTCCGGT	Design primers
743652	GCCGCTTACGGGCGCCGCTTACGTTCGCCGCTTACGGGC	Design primers
777950	GCCGTGTCGGAACCGTGACGGAACCGTGTCGGT	Design primers
812000	ATTTGTTTGATTCTGTTTGAATATGTTTAA	Design primers
866598	TCTGCGCTGCTGTGCTATGCGCTGC	Design primers
881960	TTCCGTTCCCGAATCGGCTGTTCCCGAATCATCCGATTCCGAATC	Design primers
885297	CGGTTGCCGATACGGTTGCCGGTGCTGTTGCCGCTA	Design primers
925551	GACGTACTGTTTTGACGTTCAAATCCTACTGTTTTGACGTTCAAACCTTACTGTTTTGACGCTCAA	Design primers
925618	CCTTATTGTTTTGACGCTCAAA-CCTTATTGTTTTGACGCTCAAA-CCTTATTGTTTTGACGCTCAAA	Design primers
926103	CATGCCGCCCATGTCGCCCATACCGCC	Design primers
938839	AAAAAAAAAGAAATATAAAAAAAAC	Design primers
1070195	GCGGCGAT-GCGGCGAT-GCGGCGTT	Design primers
1248015	GACGTACTGTTTTCACGTTCAAACCTTACTGCTTTCACGTTCAAACCTTACTGTTTTCACGTTCAAACCTTACTGTTTTCACGTTCAA	Design primers
1248104	CCTTACTGTTTTGACGCTCAAATCCTACTGTTTTGACGCTCAAACCTTACGGCCATGACGCTCAAA	Design primers
1302465	TGCCGG-TGCCGG-TGCCCG-TGCCGA	Design primers
1309334	GCAAGTGGCGCTCATCGGTGCGAGCGGCGTTCATCGGTGCAAGCGGCGTTCATCGGT	Design primers
1310119	CGCCGGGGCGCTTTGTGTAGCCGGAGTGCTTTGTGTAGCCGGGGCGCTTTGTGC	Design primers
1421386	CAGCAGCAGCCGAAGCAGCAGCAG	Design primers
1437436	CCGTTT-CCGTTC-CCGCTT-CCGCTT-CCGCTT-CCGCTT	Design primers
1464454	GGCA-ATCA-ATCA-ATCA-ATCA-ATCA-ATCA-ATCA-ATCA	Design primers
1543772	CCGTACCGGAAATCGCACCGGAAATCGTACCTGAAA	Design primers
1594199	AGCGCTTCCGGCAGAATCGCTTCCGGCAAGATCGCTTCCGACGGA	Design primers
1605770	ATTTATTCC-TTTTATTCC-TTTTATTCC	Design primers
1613971	CGTCGTCGTCCGACG-CGTCGTCAGCCGAAG-CGTCGTCAGCCGAAG-CGTCGTCAGCCGAAG	Design primers
1717819	GCGGCACCGGCAGCGGCTGCGGCG	Design primers
1820207	CAAAATACTTTTAAATACTTTAAAAAACTT	Design primers
1860706	TCGGATTTGCGCGTTTCCGT-TACCGTTTGCGCGTTTCCGT-TACCGTTTGCGCGTTTCCGT-TACCGTTTGCGCGTTTCCGT	Design primers
1909207	CTGCGGCTGCAGCTGCGGCGGCGG	Design primers
1986603	TTCGGCGCAACTTTTGCCGCAGCACTCCGCAACTTTTGCCGCAGCACTCCGCAACTTTTGCCGCAG	Design primers
2013349	CCGCACTAGCCGTACAAACCGCGCTAGCCGCATAAATCACGCTAGCCGTACAAA	Design primers
2032134	GCCGCGTAACCGTCCGCATAACCGGCGGCGTAACCG	Design primers
2033825	TGATGAAAAAAAGATAAAAAAACGATAAAAAAA	Design primers
2048626	TTTTTTTTTATTTTTTTCCTTTTT	Design primers
2070879	ACGGGCGCGGCCAGCGTTTCCGAAGGCGCAGCCAGCGTTTCCGAAGGCGCAGCCAGCGTTTCC	Design primers
2075867	CCGCTTCGAGTGAAACCTCTTCAAGTGAAACCGCTCCGAGCGAGA	Design primers
2095293	ACGACGAAGACGACGACTTCGACG	Design primers
2095361	GATGACGATTTTGATGATGATCTTGAAGACGATTTT	Design primers
2117492	TGAAAGTTTTCCGCTGAAAGTTTCCCACTGAAAGTTTTCCGC	Design primers
2134148	CATAGT-CTTAGT-CTTAGT-CTTAGT	Design primers
2170068	GCGTTACCGGAGACGCATTCGCTGCCGGAGACGCATTCGTTACCGGAGCGGCAT	Design primers
2171060	CCGGGAAAAACCGGCAAACACGGCGAAAAA	Design primers
2172329	TCGCAGCCGCACGTGCCGCAGTTGCACGTGCCGCAGTTGCACGTG	Design primers
2212751	GGCCGTAAGATTTAAGCGTCACGGCCGTAAGGTTTGAGAGCCACGGCCGTAAGGTTTGAGAGCCACGGCCGTAAGGTTTGAGCGTCAA	Design primers
2212840	ACAGTAAGGTTTGAGCGTCAAA-ACAGTAAGGTTTGAGCGTCAAA-ACAGTAAGGTTTGAGCGTCAAA-ACAGTAAGGTTTGAGCGTCAAA-ACAGTAGGATTTGAACGTGAAA-ACAGTAAGGTTTGAACGTGAAA	Design primers
2238590	CTTTGTGGCAGCCGCCGTTCTTTGCGGTAACCGCCGTTCTTTGCGGTAACCGCCGTT	Design primers
2244513	CAGCGCTTCGGCCGACTGCGTTTCGGCAGACTGCGTTTCGGCAGA	Design primers
2302619	TTCGGCGACAATGTTTTCGGCAGCATTGTTTTCGGCGACAATAGT	Design primers
2311550	CGCGTTATCCGCATCATC-GGCGTTATCCGCATCATC-GGCGTTATCCGCGTTATC	Design primers
2354686	CGGCGGCTTTTGCAGCTTTTGCGGCTTTTTCAGCTTTTGCGGCTTTTTCAGCTT	Design primers
2365857	AAAAAAAGAAAAAATAAAAATAAAA	Design primers
2370233	TGACGTACTGTTTTCACGTTCAAACCTTACTGTTTTCACGTTCAAACCTTACTGTTTTCACGTTCA	Design primers
2433360	CAGAATCAGGATTAGAATCAGAAT	Design primers
2445346	ATCCGC-AGCCGC-AGCCGC-AGCCGC	Design primers
2470841	ACTTTTTTTTTCGTTTTTTTACATTTTTTG	Design primers
2519528	GGTCAAGGCCTGAACGCAGCAAGGCCTGAACGCAGCAAGGCCTGAACGCATCAAAGCCTGAACG	Design primers
2520077	CCGGCAGCGCGAGGGGAT-TTGGCAGCGCGCGGGGAT-TTGGCAGCGCGCGGGGAT-TCGGCAGCACGCGGGGAT	Design primers
2527386	CGACGGCGACCGCGACGCCGCCGG	Design primers
2529121	TCGGCGGGTAAAGCCAGCG-TCGGCGGGTAAAGCCAGCG-TCGGCGGTTAACGACAGCG-TCAGCGGTTAAAGCCAGCA	Design primers
2538359	ACAGCCGAA-TCAGCCGAA-TCAGCCGAA	Design primers
2556204	CACGCAGCACAGCCGGTTCACGCAGCACAGCCGTCCACCGAAGCACAGCCGGTTCACGCAGCACAGCCGTCC	Design primers
2567078	TACAAACCGCCGCGCACTCGGCAAACCGCCGCGCACTCAGCAAACCGCCGCGCGCTCGGCAAACCGCCGCGCACTCGGCAAACCGCCGCGCACTC	Design primers
2568190	CGCAAAACGCCTCAAAACACCTCAAAACGC	Design primers
2588026	AAACCGGATAAAACGGATAAACCGGAA	Design primers
2609310	CGCCGCATTCCGGCAAAGTGCCGCATTCCGGCAAAACGCCATTTTCCGGCAAAG	Design primers
2724655	GCCGCACAT-TCCGCACAT-TCCGCACAT-TCCGCACAT	Design primers
2737040	GCGTCGGCGGCGGCATCGGCGTCG	Design primers
2787056	CCGAACGGTATGCAGCCGTGCGGTACGCAGCCGAACAGTACGCAG	Design primers
2808063	CCGCCGAGTTCGACACAGCCGAATTCGATACCCCCGACTTCGACA	Design primers
2843576	GCCGGTTCAGCAGGTTCAGCCGCTTCA	Design primers
2901456	TCAAACTACCCA-GAAAACTACCCA-GAAAACTACCCA	Design primers
3028621	CGCGGT-CGTGGT-CGTGGT-CGTGGT	Design primers
3035237	ATCTTGCGCCGCTGACACAACAAACTGCACCGCTGACACAACAAACTGCACCGCTGACACAAC	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

74903

AAAAAACGCAAAAAACGTGAAAAACGC