Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Bacillus anthracis CI

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
8884	ATAATATACTATGATATATTATAAA	Design primers
207527	ATAATTAATT-ATAACTAAAT-ATAACTAAAT-ATAACTAGTT-ATAATTGAAT	Design primers
271613	CTTGGATTGG-GATGGATTGG-GATGGATTGG	Design primers
291506	TTCTAAGTG-CTCTAAGTG-CTCTAAGTG	Design primers
412802	CTGCCACCAGAACCACTGCCACCAGAACCGTTGCCACCCGAGCCATTGCCACCAGAACCGTTGCCGCCAGAACCG	Design primers
412889	CCACTGCCACCAGAA-CCACTGCCACCAGAA-CCGTTGCCGCCAGAA	Design primers
412952	CTGCCACCAGAACCATTGCCACCAGAACCGTTGCCACCCGAGCCATTGCCGCCAGAACCATTGCCGCCAGAACCATTGTCACCAGAACCACTGCCACCAGAACCGTTGCCACCCGAGCCATTGCCGCCAGAACTATTGCCGCCAGAACCGTTGTCACCAGAACCACTGCCACCAGAACCGTTGCCGCCAGAACCATTGCCACCGGAACCA	Design primers
415507	GGCGAAGGTGAAGGCGATGACGAA	Design primers
507217	GAAAAAGCAAAAGAAAAAGGAAAA	Design primers
585713	TTCTTT-TTCTTT-TTGTTT-TTCTTC	Design primers
588143	ATGCCAATAC-TTGCAAATAC-TTGCAAATAC-TTGCAAATAC	Design primers
614273	GATATTAATATTGTTATTAATATT	Design primers
716411	TGTTTGAGTTTGTGATTGCGTTTG	Design primers
731495	TTAAAGTTAAATTTAGAGTTACAG	Design primers
752522	GAAAATTAAAATGATAATGAAAAA	Design primers
780855	TTGAGCTTTAGCCGCTTCACGAGCTTTAGCTGCTTCTTGAGCCTCAGCTGCTTC	Design primers
780926	CTTGAGCTTTAGCCGCTGCTTGAGCTTCAGCTTCTGCCTGAGCTTTAGCTTCTGCTTGAGCTTTAGCTGCTT	Design primers
781013	CTTCTTGAGCCTTAGCTTCTGCTTGAGCTTCAGCTTCTGCCTGAGCTTTAGCTTCTGCTTGAGCTTTAGCTG	Design primers
781091	GAGCTT-TAGCTG-CTTCTT-GAGCCT-TAGCTT-CTGCTT-GAGCTT-CAGCTG-CTTCAC-GAGCTT-TAGTTG-CTTCTT-GAGCTT-TAGCTT-TTGCTT	Design primers
781185	TTCAGCTTCTGCTTGAGCTTTAGC	Design primers
785205	GAACAAAAACAAAAACAAGAACAT	Design primers
808709	AAAGAAGTGGACAGAAGGGGAAAGAACTGT	Design primers
865022	AGTTGCGCTGATATATTTTGAAAATCGCTGATATATTTTGAAAATCGCTGATATATTTTG	Design primers
927116	AAAGAGAATAAAGAAAATAAAGAAAAT	Design primers
935497	TGGAAGAAAAACCAAAGGTTATTAAAGAAAAACCAAAGGTTATTAAAGAAAAACCAATGATTA	Design primers
958621	TTTTATTTATTTTTATTTCATTTATTTTAT	Design primers
1122415	TAATTTATAATAATTTTAAATAAATAATAA	Design primers
1177490	GGCCCAGTC-GGCCCAGTC-GGTCCAGTC	Design primers
1177529	CCAGTTGGCCCAGTCGGCCCAGTTGGT	Design primers
1208947	TTTCGGTTCTTTTGGTTCTTGCGGTTC	Design primers
1249052	TTCTTCAGCAGGTTTTTGCTCAGCTGGTTTTTGTTCAGCAGGTTT	Design primers
1391455	AGAAGAGGAAAAACGAAGAAAAGAAGAAGAGAAGAGAAGAAAAGAAGAAGAACAACAACGAAA	Design primers
1392990	CCCAGTAGC-ACCAGTAGC-ACCAGTAGC	Design primers
1427239	AAATATTT-AAATATTT-AAGTATTT	Design primers
1428997	AAAAATAAAATAAAAACAAAAAGAA	Design primers
1435815	ATTAATATTCTATTAAAATTTTATTAACATTAT	Design primers
1477767	TTGTTGTTGTTCTTGCTGCTGTTG	Design primers
1547961	TAA-TGA-TAT-TGA-TGA-TGA-TGA-TGA	Design primers
1578741	TTTTTTTGTATTCTTTTTTATATTTTTGTA	Design primers
1651467	TATTAAATTATATTTAAATAAATTAAATTG	Design primers
1665079	TTGTAGGTTTTTGTATGATTTTGTAGGTTC	Design primers
1809303	ACAAAC-TCAAAC-TCAAAC-TCAAAC	Design primers
1960021	TTGCTGTTGTTGTCGCTGTTGCTA	Design primers
2012988	CCAGATCCAAATCCAGAACCAAAT	Design primers
2145743	ATGAAAATAAAAATAAAAATGGAA	Design primers
2155751	AAA-AAG-CAA-GAA-GAA-TTA-AAA-AAA-CAA-GAA-GAA-CTT-AAA-AAA-CAA-GAA-GAA-GAA	Design primers
2155829	CAGGAAGAACAAAAGAAACTAGAAGAGCAAAAGAAACAAGAAGAAGAAAAGAAA	Design primers
2225455	TTATTTG-TTAGTTG-TTAGTTG-TTAGTTG	Design primers
2252248	CCAACAGGA-GCAACAGGA-GCAACAGGA	Design primers
2253887	GGCCCAACAGGAGCAACAGGTCTAGCAGGAGCAACAGGCCCGACAGGAGCAACT	Design primers
2304314	TGTTCCAGTCGGCCCAGTCGGCCCAGTCGGCCCAGTCGGCCCAGTCGGCCCAGTCGGCCCAGTCGGCCCAGTCGGCCCAGTCGGCCCAGTCGGCCCAGTCGGCCCAGTCGGCCCAGTCGGCCCAGTCGGTCCAGTCGGTCCAGTTGGTCCAGTCGGCCCAGT	Design primers
2304477	GGCCCAGTCGGTCCAGTTGGTCCAGTTGGTCCAGTCGGCCCAGTCGACCCAGTC	Design primers
2387459	AAAGATAAAAATATAAAACGATAA	Design primers
2585286	CAATCCCAATTACGATCCCAATCACAATTCCGATTA	Design primers
2594450	CCCTTT-TCCTTT-TCCTTT-TCCTTT	Design primers
2633728	ATGTTCATTT-ATTTCCATTT-ATTTCCATTT-ATTTCCATTT	Design primers
2644938	ATAAATATAAACATGAATATAAAT	Design primers
2646498	ATCCGTACAA-TTCCGTACAA-TTCCCTACAA	Design primers
2662385	TGATTCGCAATCTTCTTTTTT-TGGCTCACAATCCTCTTTTTT-TGGTTCACAATCCTCTTTTTT-TGGTTCACAATCCTCTTTTTT	Design primers
2815466	GGAAATGAAAATGGAAAATGAAAT	Design primers
2821204	TATATATACTTTATATACAATATATAC	Design primers
2915341	TTTTTTAATTTTTTACTTTTTTGA	Design primers
2917657	AAAAATAAAAAAACAAAACAAAACA	Design primers
2935273	TCCATGTCCGCCTTGCCAACC-ACCGTGTCCGCCCGGCCAACC-ACCATGTCCGCCTTGCCAACC-ACCATGTCCACCTTGCCAACC-ACCGTGTCCGCCCGGCCAACC-ACCGTGTCCGCCTTGCCAACC-ACCGTGTCCACCTTGCCAACC-ACCGTGTCCACCTTGCCAACC-ACCGTGTCCACCTTGCCAACC	Design primers
3047075	TCCTCTTCCCCTTCCTCATCTTCT	Design primers
3206042	ACAAGT-ACAAGT-AGAAGT-AGAAGT	Design primers
3262425	TATTATTATTTTTGTTATCATTAT	Design primers
3328622	TT-AT-CT-TT-TT-AT-CA-TT-TT-AT-CT-CT	Design primers
3407471	TATCAACATCAATAGCAATAACAA	Design primers
3455063	TGTAGTAATGCTGGTAGTACTGCTGGTAGTACTGCT	Design primers
3468068	CCTACTGGACCTACTGGGCCTTCTGGA	Design primers
3502495	ATAAGAAATTAAAAAAAATTATAAAAAATG	Design primers
3544877	TTGTTCCTCTTTCTTCGGTTCTTCTTTCTTTGGTTCCTCTTTTTT	Design primers
3659282	CAATCTTC-AAATCTTC-AAATCTTC	Design primers
3737414	CAAGTGCAAGTCCAACTGCAAGTC	Design primers
3759449	TCACAACCACAATCTCAATTACAA	Design primers
3778236	AACTTT-TACTTT-TACTTT-TACTTT	Design primers
3804955	TTAACATTTTTTGAACATTTATTGAACTTTTTT	Design primers
3810234	ATGACAAAGATAACAAAGATAACAAAG	Design primers
3887999	CTTGCCCTGCAACTTGCATTGCAACTTGCTCTCCAA	Design primers
4014040	CCAATATCGACAGCAATATCAACAACAATATCAACA	Design primers
4014453	AAAAAAAAAGAAAAAGAAAAAAAAT	Design primers
4115227	CTTCTTCTTCAGCTTTTTTCTGTTCTTCTTCAGCCTTTAGCTTTTCTTCTTCTTCTTTCTTCT	Design primers
4129007	ACATAC-ATATAC-ATATAC-ATATAC	Design primers
4163846	CTTCTTCTTCATCCTCTTCTTCTG	Design primers
4165248	TTGTGGTTTTACCTGCACTTCTTTTTGCGGTTTCACCTGCATTTCCTTCTGCGGTTTTACCTGTACTTCTTTTTGTGGTTTCACTTGCACTTCTTT	Design primers
4266378	CCCGTTGCTCCTGTTGATCCCGTTATTCCTGTTGCTCCCGTTACTCCTGTTGCT	Design primers
4282224	CTTGGCTGTCGTTTCCGCCTTGGTTGTCATTTCCACCTTGGTTGTTGTTTCCGC	Design primers
4283113	TGGGTCAGGCTTTTGGTCGGGCTTTTGGTCGGGCTT	Design primers
4325142	CTTTATTTCTTTGTTTCTTTGTTT	Design primers
4362384	TATTCTCTTATGCTCTTGTTCTCT	Design primers
4391968	ATATATACATATATATAATTATAT	Design primers
4421460	CTTCTTCTACTTCTACTTCTACTTCTTCTGCTTCTG	Design primers
4453673	CCTGTGTTTCCCGTGTTTCCCGTGTTT	Design primers
4454159	CCTGTTTCTCCTGTTGCTCCTGTTACT	Design primers
4454198	GTTGCTCCCGTGCTTCCTGTTGCTCCCGTGTTTCCGGTTACCCCGGTGCTTCCT	Design primers
4454964	TGCTTCCTGTTGCTCCTGTGTTTCCGGTTGCTCCCGTACTTCCTGTTACTCCCG	Design primers
4455076	TCCTGTTACCCCGGTGCTTCCTGTTGCCCCTGTACTTCCTGTTACCCCAGTACT	Design primers
4455157	ACCCGTACTTCCTGTTACTCCCGTACTTCCTGTTACCCCGGTGCTTCCTGTTACCCCAGTACTTCCTGTTGC	Design primers
4455328	TCCTGTTACCCCGGTGCTTCCTGTTGCCCCTGTACTTCCTGTTACCCCAGTACT	Design primers
4455453	CTCCGGTGCTTCCCGTTGCTCCGGTGCTTCCTGTTGGACCTGTGCTTCCCGTTGCTCCGGTGCTTCCTGTTG	Design primers
4463703	TTG-TTG-GTG-CTG-TTG-GTG-CTG-TTG-GTG	Design primers
4463749	TGTTGGCCGTGGTGACCTTGGTGGCCTTGGTGGCCTTGATGACCGTGGTGACCT	Design primers
4463950	CCATGATGACCATGGTGACCCTGATGA	Design primers
4492696	AG-CT-TT-TT-AT-CT-TT-TT-AT-CT-TT-TT	Design primers
4515693	TCTGGTTTCACTTCCGGTTTTACTTCTGGTTTCGGT	Design primers
4537388	TAGAAAAAGGTATAGAACAAGGTATAGAGCAAGGTATAGAACAAGGTA	Design primers
4561258	AA-AA-AG-GA-AA-AA-AA-GA-AA-AA-AA-GA	Design primers
4600518	TGCTTCTCCTTCTGCTTTTGCTTC	Design primers
4640651	ACTTTTACTTCTTCTTTTACTTTTACTTTA	Design primers
4883920	TAAACAGGACAAACAAGACAAACAGGATAAACAAGACAAGCAGGATAAACAAGACAAGCAGGATAAACAAGA	Design primers
4984444	GCCTTCGCTTTCGCTTTCGCCTTT	Design primers
4984546	GCCTTCGCTTTCGCTTTCGCCTTT	Design primers
5100038	TTTCTTCTCTTTTATATTCTTTTCT	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

8884

ATAATATACTATGATATATTATAAA