Microsatellites /Tandem Repeats database

Genome: Erwinia sp. Ejp617

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
71116TCATTTTCG-TCATTTTCG-TTATTTTCGDesign primers
131665AAGAAAAATTAAAAAAAATTAAAACAAATTDesign primers
246691AACTGCTGGAACTGCTGAAACTGTTGGDesign primers
368427GCC-GCT-GCC-CCT-GCT-GCT-GCT-GCTDesign primers
401002GACGCCGCCGCCGCCGCCGACGCCDesign primers
445277CAAATG-AAAATG-CACATG-CACATG-CACATGDesign primers
476468TGGTGAATAGATTTATGAATAGATTTGTGAATAGATDesign primers
521893AATTAAAAGTAAAATAAAATTTAADesign primers
590180CCTTAATCATTTACCCTCAATCATATACCCTCAATCATATACDesign primers
622251CAGGGGAAT-CAGGCGAAT-CAGGCGAAT-CAGGCGAAT-CAGGCGAATDesign primers
681773CCGCCCATGCCGCCCATACCACCCATGDesign primers
817832GCGCCTCCGCTGATGATGCCTCCGCTAATGGCTCCTCTGCTGATGDesign primers
1010893GCTTGATTTTGA-GTTTAATTTTGA-GTTTAATTTTGA-GTTTAATTTTGA-GTTTAATTTTGADesign primers
1029456AAGCAATGT-GAGCAATGT-GAGCAATGTDesign primers
1044962AGCCTG-TTCTGG-TTCTGG-TTCTGG-TTCTGG-TTCTGG-TTCTGG-TTCTGG-TTCTGG-TTCTGG-TTCTGG-TTCTGG-TTCTGG-TTCTGG-TTCTGG-TTCTGGDesign primers
1106348GCTCCA-GCACCA-GCACCA-GCGCCADesign primers
1133607AAATGA-TAATGA-GAATGA-GAATGADesign primers
1185720CACCAG-CACCAG-CGCCAG-CAGCAGDesign primers
1196216ACGCCGGA-ATGATGGA-ATGATGGA-ATGATGGA-ATGATGGA-ATGATGGADesign primers
1209009TTAAAGG-GTAGAGG-GTAGAGG-GTAGAGG-GTAGAGG-GTAGAGGDesign primers
1230573TTTCATTATTTTCATTAATTTCATTTTDesign primers
1400160CGCGTCTTCCGCATCTTCCGCATCTTCDesign primers
1426712TCGGTTGGG-TCGGTTGGG-TCGGTCGGGDesign primers
1620917TGCTGGTGATGGTGCTGTCGCTGGDesign primers
1688261TGATGGCGGCGATGGCGGTGACGGCGGDesign primers
1710576TCGTGATGACCGTCGTGACGATCGTCGCGGTGACCGDesign primers
1734523GGCCAGTTCAGGGGCCAGGTCAAGGGCAAGTTCAGGDesign primers
1755776TTC-TTC-GTC-TTC-ATC-TTC-GTC-TTCDesign primers
1810663CCCCAACTTAGCGCCAACTTGGCCCCAACTTGADesign primers
1826273TGGTAA-TGGTGA-TGGTGA-CGGTAADesign primers
2044141GCTTGTT-TCTTGTT-TCTTGTT-TCTTGTTDesign primers
2045234TGAATTATC-TGCATTATC-TGCATTATC-TGCATTATCDesign primers
2045339TGAATTATCTGCATTATCTGCATTATCDesign primers
2097620ATTGATATGGATATTGAGATTTATDesign primers
2167487CAATCAACA-CAATCAAAA-CAATCAAAA-CAATCAAAA-CAATCAACADesign primers
2279647TCC-TGC-TCC-AGC-TGC-TGC-TGC-TGCDesign primers
2369035CAGCACCAGCGCCAGCACCATCACDesign primers
2383700GCTGGCGCTGACGCTGGCGGTGGCDesign primers
2425401CCAGCACCAGTACCGGCACCGGCADesign primers
2580672ATTGGTAAAAGCGCACTACATCGGTAAAAGCGCACTACATCGAAAAAAGCGCACTACDesign primers
2594970CGGCAACGGCAGCAGCAACGGCAADesign primers
2611440GTTTTCACTGCTATTCACTGCTATTCACTGDesign primers
2644171ACCAGCGCCAGCACCAGGGCCAGCAGCAGCDesign primers
2673608CATTGG-TATTGG-TATTGG-TATTGGDesign primers
2727241CTGGAGCGGGAGCTGGTGCTGGAGDesign primers
2742088AGAGAAAGCGGCTGCTGATAAAGCCGCTGCAGAGAAAGCTGCGGCDesign primers
2768073GAATCGATTCGAATCGATTCGCATCDesign primers
2780711TAATG-TGCTG-TGCTG-TGCTG-TGCTG-TGCTGDesign primers
2783174GATTAA-ACTGAT-ACTGAT-ACTGAT-ACTGAT-ACTGAT-ACTGAT-ACTGAT-ACTGAT-ACTGAT-ACTGAT-ACTGAT-ACTGAT-ACTGAT-ACTGAT-ACTGAT-ACTGAT-ACTGAT-ACTGAT-ACTGATDesign primers
2802679TGTTCAACCGCCGGAGCT-GGTTCAACCGCCGGGGCT-GCTTCAACCGCCGGGGCT-GGTTCAACCGCCGGAGCT-GCTTCAACCGCCGGAGCT-GCTTCAACCGCCGGAGCT-GCTTTAACCGCCGGAGCT-GCTTCAACCGCCGGAGCTDesign primers
2802824CTTCAACCGCCGGGGCAGCTTCAACCGCCGGGGCTGGTTCAACCGCCGGAGCTGCTTCAACCGCCGGGGCTGDesign primers
2802900AACCACCGGGGCTGATTC-AACCGCCGGAGCTGGTTC-AACCGCCGGAGCTGCTTC-AACCGCCGGAGCTGCTTC-AACCGCCGGAGCTGCTTCDesign primers
2803784CTGCGCTGCGTTCGTTACGCTCTGCGCTGCGATCGTTGCGTTCACCGCTGCGATCATTACGCTDesign primers
2879530CATTTTTTAA-TGTTTTTTAA-TGTTTTTTAADesign primers
2966678TATTAATATCAATATCAATATTATDesign primers
3041947AAATAAATGCGG-AAATAAATGCGG-AAATATAAGCGGDesign primers
3091636GGCGACGGCGGCGGCAACGGCGGCDesign primers
3091756GGCGACGGCGGCGGCAACGGCGGCDesign primers
3091876GGCGACGGCGGCGGCAACGGCGGCDesign primers
3091996GGCGACGGCGGCGGCAACGGCGGCDesign primers
3145309TTTGGAGTGTACATTGGAGTGTATGTTGGATTGTACDesign primers
3287975GGTTT-TGGCT-TTGGT-TTGGG-TTTGDesign primers
3589353TGCTGG-CGCTGG-CGCTGG-TGCTGGDesign primers
3720945CAGAACTATCCGAACTATCCGAACTATDesign primers
3784184AGC-GGC-AGG-GGC-AGC-AGC-AGC-AGCDesign primers
3790590AAAAATAAAAAAAAGAATAAAAAAADesign primers
3804528TCACTGTCCGTTGCTGTCCGTTGCTGTCCGTTGCTGTCCGTTGCTGTCCGTCACTGTCCGTCACTGTCCGTCACTGTCCGTCACTGTCCADesign primers

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