Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Halogeometricum borinquense DSM 11551

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
10059	TCGACATCGAAATCGACCTCGACG	Design primers
31695	GATTCGGAAGCCGATTCCGGAACT-GACGCAGAAGACGATTCCGGAACT-GACGCAGAAGACGATTCCGGAACT-GACGCAGAAGACGATTCCGGAACT-GACGCAGAAGACGATTCCGGAACT	Design primers
57423	GTCCATACAGGCCATACAGGCCATACA	Design primers
70234	GGTTCGTCGTCAGTGATCCGTCGTCGTCAGTGATTCGTCGTCGTCAGTGAT	Design primers
82694	GGCGGCATGGGTGGCATGGGCGGTATGGGCGGCATG	Design primers
91545	TCCTGCATCTGCTGCATCTGCTGCATC	Design primers
112526	ACCTCGACGTCGAACTCGACATCG	Design primers
117460	CGTTCTCGTCGTCCTCGTCGTTCTCGC	Design primers
190748	GAAATAATAACAATAACAATAACAATAACAATAACAATAACAATAACAATAACA	Design primers
192751	CGCGGTTCGATAACTGACTGCTGT-TCGAGTTCGATAACTGACTGCTGT-TCGAGTTCGATAACTGACTGCTGT	Design primers
253512	CCGTTATCGCGTCGTTACCGCGTCGTCATCGCG	Design primers
284359	TTCACACTCATACAGCTCACACCCGTACAGTTCACACTCACACAG	Design primers
291605	CGCCGACGCGGACGCCGATGCCGA	Design primers
362917	TCCTCGTCTTCGTCCTCGTCCTCG	Design primers
365635	ACGCGGAATCAACAGACGCGGAATCGACAAACGAGAAATCGACAG	Design primers
373312	CGACACGCCCCGTGACGCCCCGACACGAGC	Design primers
382919	ACGCCGACACCGACGCCCACGCCG	Design primers
486342	GAACAGCCGTACTCGTTG-TTACTGCCGTACTCGTTG-TTACTGCCGTACTCGTTG-TTACTGCCGTACTCGTTG-TTACTGCCGTACTCGTTG	Design primers
491026	GCCTACTTGTGCGTCTCGGCTGCCTACTCGTGCATCCCGACTGCCTACTCGTGCATCCCGACT	Design primers
491091	CACCTCGTTCGTCTCGACGG-CTACTCGTGGGTCTCGACGG-CTACTCGTGGGTCTCGACGG-CTACTCGTGGGTCTCGACGG	Design primers
597345	TGTGTTCCACTCGTACCGCTCTCCTGCCCCACTCGTACCGCTCTCCTGCCCCACTCGTACCGCTCT	Design primers
618077	CAGACACCGATTCAGCGTCGGTCACCGATTCCGCGTCGGTCACCGATTCAGCGT	Design primers
625103	TTAGTACGGGACCGTGAGTTCTTGCGGGACCGTGAGTTCTTGCGGGACCGTGAG	Design primers
633227	CGTCGTCCTCGTCGTCGCCGGCGT	Design primers
659543	GTC-GTC-CTC-GTC-GTC-CTC-GTC-ATC	Design primers
693373	GTCGGCACGCGTCGGGACGACTCGGCGCGC	Design primers
710479	AA-TA-TA-TA-TA-TA-TA-TA-TA-TA-TA-TA	Design primers
728561	CCCGACTTTGCTTTGGT-CCTGACTCCGCTTTGGT-CCTGACTCCGCTTTGGT-CCTGACTCCGCTTTGGT	Design primers
771052	CGGTCGGTGTCGCGGTTGGCGTCGCGGTCGGTGTCT	Design primers
835033	GACGGCTACGCCGACGACGGACACGCCGACGACGGACACGCCGTC	Design primers
840726	CAGCAGAGCGGGGGCCAACAGAGCGGGAGTCAACAGAGCGTGAGC	Design primers
844555	CGCGCT-CGCGCT-TGCGCT-CGCTCT	Design primers
882421	TCGGATTCGGCTTCGGATTCGGCT	Design primers
892653	CGCCTCCGCTTCAACCGTCTCCGCTTCGGCCGTCTCCGCTTCGGCCGTCTCCGCTTCGGCCGTCTCCGCTTCAGT	Design primers
911536	CGGCGACGACGACGCCGACAGCGA	Design primers
987561	CCGTCG-CCGTCG-GCGTCG-CCTTCG	Design primers
1014559	GATGGTGAACGGGCGAATTAGCATGTGATCGGGCGAATTAGCATGTGATCGGGCGAATTA	Design primers
1035522	GTAGA-TGAGA-TGAGA-TGAGA-TGAGA-TGAGA	Design primers
1060047	GAAGTCTGAATCCAAGTCGAGGCTGAATCCAAGTCGAGGCTGAATCCAAGT	Design primers
1088670	GGCGTCGGAGTCGGCGGCGGCATC	Design primers
1102317	CCGCCACTGCCACCGGCACCGCCG	Design primers
1132991	CCTCTTCGTCTTCCTCTTCTTCTT	Design primers
1151939	GCGAGAACGAGAGCAAGAGCGAGT	Design primers
1273488	CATCGC-CATCGC-CGTCGC-CATCTC	Design primers
1282891	GACGACTACGGCAAGCGACGACTCCAGCAGGCGACAACCGCGGCAAGCAACGACGGCGGCAAGC	Design primers
1301273	CAGAGT-CAGAAC-CAGAAC-CAGAAC-CAGAAC-CAGAAC	Design primers
1320466	TTTCGGCTTCTGCGGTTTCGGCTTCTGCGCTTTCAGTTTCTGCCG	Design primers
1321613	GCGACG-GCGACG-ACGACG-GCGAAG	Design primers
1344866	CG-AG-TG-CG-CG-TG-CG-AG-GG-CG-AG-TG	Design primers
1349961	GACGCCGTCGCCGACGCTGACGTC	Design primers
1363369	GATGACGATGGCGATGACGACGAC	Design primers
1373008	GCGTTGGCGTTCCCGTTGGCGTTA	Design primers
1385135	TTCTCTCCAG-CTCTCTCCCG-TTCTCTCCCG-TTCTCTCCCG	Design primers
1392236	ATGCTTCGGACCCCTCGGACGACGCTTCGACCCCCTCGGACAACGCTTCGACCTCCTCGGACGACGCTTCGGACCCCTCGGACG	Design primers
1403416	CGAGTACGCCGAGTCCGAGTAGGGTACGCCGAGTCCGAGTAGGGTACGCCGAGTCAGACT	Design primers
1415233	TCGGGT-TCGGGT-TCCGGT-GCGGGT	Design primers
1543349	CTGTCT-CTGTTC-CTGTTC-CTGTTC-CTGTTC-CTGTTC	Design primers
1547672	GCCGAAGCGGAGACTGCTGAAACCGAGACTGCTGAAGCGGAGGCA	Design primers
1575000	TCTGACGTTTCGTCGTCTGGCGCTTCTTCGTCCGACGCTTCCTCG	Design primers
1602801	CGAACAGACCGACGAGCGGACCGACCAACAGGCCGA	Design primers
1667014	CGACGCCGTCGCCGACGCTGACGC	Design primers
1693262	CCGACGCCAACGCCGAAGCCGTCG	Design primers
1696004	CTCGCGGTTCCCCGCGATTCCCCGCGGTTC	Design primers
1703774	AGGCGACGGCGAAGGCGTAGGCCA	Design primers
1742715	GCGGACGATCCTTCGGCAGACGATTCTCCGGCGGACGGTCCCCCGGAGGACGATCCTTCAGTGGACGGTCCTTCGGCAGACGATTCTCCG	Design primers
1793489	GTCGAGCGGTGAAAGGCAGTCGAGCGATGGAGGGCAGTCGAACGGCGAAAGACA	Design primers
1825787	CGCGGACGCCGACGCGGTCGAGGA	Design primers
1871966	TCGGAAGATTCGGGAGATTCGGAAGAT	Design primers
1931470	AACTCGACGAACTCCACGAACTCGTCG	Design primers
1941454	CCT-CTT-CGT-CTT-CTT-CTT-CGT-CTT	Design primers
1950416	ACGATGACGGTCACCGCGGTCATGACGACGGTCACCGCGGTCATGACGACGGTCACCGTGGCC	Design primers
1976471	GACAAC-GACAAC-GACAGC-GACGAC	Design primers
1983402	CTGAGCGCGTCATCCGT-TCGAGCGCATCATCCGT-TCGAGCGCATCATCCGT-TCGAGCGCATCATCCGT	Design primers
1986995	ACGACGACGACGAAGACGAAGACG	Design primers
2037123	ACGAAAACGATAACGAAGACGACA	Design primers
2204203	CCGTCGCCGTGGCCGTCTCAGTCG	Design primers
2291007	CGGTAG-CGGTGG-CGGTGG-CGGTGG	Design primers
2320626	CGCCATCGTCGCCGTCGTCACCATCGT	Design primers
2379590	AAGAGACGGAACAAACGCAGAGAGATGGAGCAAACGCAGAGAGATGGAGCAAACGCA	Design primers
2401246	GACG-GACG-AACG-GACG-CACG-GACG	Design primers
2462349	GAGGGCGAGGACGGCGAGGACGGCGAG	Design primers
2465480	AACCGACTGACGAAGTGACCGACA-CGCCGACTGACGAAGTGACCGACA-CGCCGACCGATGAAGTGACCGACA	Design primers
2509609	CTAGTTCGAGTTCCAGTTCGAGTT	Design primers
2556597	TTCGGGACACGTACGTCTGAGGCTTCGGGACAGGTACGTCCGAGGCTTCAGGACACGTGCATCTGAAGC	Design primers
2616966	CGGCGGCAT-GGGCGGCAT-GGGCGGCAT	Design primers
2651305	TCGTCGTCTTCGCCGTCGTCCTCG	Design primers
2665492	GCAGCAACTTGACGGAAGCAACTTGATGGCGGCAACTTGGCG	Design primers
2708878	CAGAGCGGAAGCGGTGCGGAGGC-AGAGGCGGAAGCGGTGCGGAGGC-AGAGGCGGAAGCGGTGCGGAGGC	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

10059

TCGACATCGAAATCGACCTCGACG