Microsatellites /Tandem Repeats database

Genome: Burkholderia cenocepacia J2315

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
65773GCCGGC-CACGAC-CACGAC-CACGAC-CACGAC-CACGAC-CACGAC-CACGAC-CACGACDesign primers
68077CGGCGGCCACGGCGGCGGTCATGGCAGCGGGCACGGDesign primers
77825TCGGTACATCGGCACATCGGCACADesign primers
77856TTCGGCATTTCGGCACATCGGCATDesign primers
95859TGGCACC-CGGCACC-CGGCACC-CGGCACC-CGGCACCDesign primers
115863TGGCTCGGA-CGGCTCGGA-CGGCTCGGA-CGGCTCGGADesign primers
159960CGGCGGCGGCGATGGCGGCGGCGGDesign primers
166146GCCGCGGGATCGCTCGCCGCCGGATCGCCGGCCGCGGGATCGCCCDesign primers
170602CACCGATCG-TACCGATCG-TACCGATCGDesign primers
197916GTGGC-CCGGC-CCGGC-CCGGC-CCGGC-CCGGCDesign primers
205661GCCGGCACCGGCGCCTGCGCCGGADesign primers
360491CGCCAT-CGCCAT-CCCCAT-CCCCAT-CCCCAT-CCCCAT-CCCCATDesign primers
410678GATCGCGATCGGACAGCGATCGGATAGCGATCGDesign primers
484827CGCGATCCCGATCGCGGTCGCGCTDesign primers
531455GTCGGCCTTGTCGGCTTTCTCGGCCTTDesign primers
554390TGATCGTGATCATGGTCGTGATCGDesign primers
559319TGCCGATTGGCCGATTGGCCGACTGGCCGACTGGCCGACTGGCCGACTDesign primers
576536GGG-CGG-CGG-CGG-GGG-CGG-CGG-CGGDesign primers
579965AGGGGACGGCCATCCGGGGACGGGCATCCGGGGACGGCCATCDesign primers
630820CCGCGACCGCGCTCGCGAACGCGADesign primers
660438GGGTGGGCGGCGGGCTGGTCGGCGGCGTGGTCGGCGDesign primers
675650GAAGGCA-GGAGGCA-GGAGGCA-GGAGGCADesign primers
684226CGAGCCGCGCGAGCAGCGCGCGCCGCGDesign primers
831057GCGGCCGGCGAGGCCGGCGAGGCCGGCDesign primers
882272CTTGTCCTTTTCCTTGTGGTTGTCDesign primers
978750CCAGCTGGGCGCCCCCAGCTAGGCGCCCCCGGCTAGGCGCCCDesign primers
979723GGCAGC-GGCAGC-GACAGC-CGCAGCDesign primers
1070195GCGGCGGCCGCGACGGCGACGGCGDesign primers
1070483TTCGCGCGGCTCACGGCCTTCACGCGGCTCGCGACCTTCACGCGGGCCACGGCCDesign primers
1090630TCGGCTTCGGTTTCCGCTGCGGCTDesign primers
1103971GCGGCAGCCGCAGGGGCAGCGGCGDesign primers
1127254GGATAGGGGCGCCCGGCTAGGGACGCCCGGTTAGGGGCGTCCGGCTAGGGGCGCCTGGCTAGGGGCACCCGGCTAGGGGCGCGCDesign primers
1133860GGGGAAAG-CGGGAAAG-CGGGAAAG-CGGGAAAGDesign primers
1170521CTCGCCGCTA-CTCGCCGCTA-CTTGCCGTTA-CTCGCCGTTADesign primers
1180013AAAGGACGCCCGGTTAGGGACGCCCGGTTAGGGACGCCCGGTDesign primers
1199229GCGGCCGTGGCCGCAGCCGAGGCCDesign primers
1211056GGCGCGATGAAGAAGGACGGCATGAAGAAGCATGCGATGAAGAAGDesign primers
1217908CGCGAGCGCGCGCGCCAGCGCGACDesign primers
1242689CATGACGAC-ATCGACGAC-ATCGACGAC-ATCGACGAC-ATCGACGAC-ATCGACGACDesign primers
1325664TCGGCGTCGACGTCAGCGTCGTCGDesign primers
1371081ATCCTGTTCTTCATCTCGTTCTTCATCCAGTTCGTCDesign primers
1462863TGAATCGCCGGCCGCCGGAGCGCCGGCCGCCGGATCGCCGGCCGCCGGATCGCCGGCCGTDesign primers
1503310CGATGC-CGATGC-CGAGGC-CGATGCDesign primers
1503663GCGGCGGGGGCGGCGGGGCCGGCGDesign primers
1520789CGCGATCACGATCGCGAGCGAGATDesign primers
1572448CGACGCAACGATGCAACGACGCATDesign primers
1573926CTTCAGCGCTTCAACGCTTCAGCGDesign primers
1592063CCTGACCGGGCGCC-CCTAGCCGGGCGCC-CCTAGCCGGGCGCC-CCTAGCCGGGCGCC-CCTAGCCGGGCGCCDesign primers
1634676AGCGGAGCTGAGCTGAGCTGAGCGTDesign primers
1641097CCC-GGC-CGC-GGC-GCC-GGC-GCC-GGCDesign primers
1665247GCCGCAGCGCAGCAGGCGGCAGCCCAGCAGGCCGCCGCCGAGCAGDesign primers
1689550GACGTGCCGCTCGTGCCCGAGGTTCCGCTGGTGCCCGACGTGCCGCTCGTGCCCDesign primers
1699899GGCGGTGGCAGTAGCGGTGGCGGCDesign primers
1806225TCGCGCTCGCCCGCGCGCTCGCGGTCGAGCDesign primers
1869029CAGCCGGCCGTCCAACCGGCCGTCCAACTGGCCGTCDesign primers
1891905GCGCGGCTCGCCGCGGCGTGGGGCGDesign primers
1917215CGCGGGGGCCGGCCA-TCCGGGGGCCGGCCA-TCCGGGGGCCGGCGADesign primers
1939722CGCCGCGCGCCACGCGCCGAGCGACGCGDesign primers
2024262CCGGCGCCCCGTCGCCCCGTCGCCDesign primers
2037485GACGCACCCGACGCAGCCGACGCACCCDesign primers
2070885AGCACGAGCCCGAGCACCATCACGDesign primers
2179238GGATCGGGCGACCG-GCAGCGGGCGACCG-GCAGCGGGCGACCG-GCAGCGGGCGACCG-GCAGCGGGCGACCG-GCGTCGGGCGACCGDesign primers
2256547CCGCAGGCGCCGCGTGCGCGGGGGCCGCGTGCGCGGGGGCCGCGTDesign primers
2414405GCCGCGGCCGGACCGCCGCCGGGTGGCGGCCGGDesign primers
2435637CGGCGCGGGTGCCGGCGCGGCGGCCGGGGCCGGTGCDesign primers
2491520GCGCCGCGTCGAGCCACGCCGCGTCDesign primers
2495279CGCGCTGCTCGCGCCGCTCGCGGTGCTDesign primers
2585277CGGCGATCACGACGATCACGGTGATCADesign primers
2609788ACACGAGCACGAACGCGACCACGADesign primers
2648626CGA-AGA-CGA-CGA-GGA-AGA-GGA-AGADesign primers
2656838CATGGCCATTGCCATGCCCATGCCDesign primers
2658116GCCGCGCTGCGCCGAACCGCGCAGCDesign primers
2672031CCGCGCTCACCGCCACGCTCCCCGCCGCGCTCGTCGDesign primers
2673338GCCGC-GGCGC-GCCGC-GCGGC-GCCGCDesign primers
2677634GCGGCC-GCGGCC-GCCGCC-GTGGCCDesign primers
2679312CCGCAACCACAACCGCAGCCGCAADesign primers
2689411CAACGACCACGACAACGACAACGADesign primers
2731972CGGCGGCTGATAGGCCGGCGCCTGGTACGCGGGTGCCTGATAGGCDesign primers
2754563TTGGGGCTTGGT-GCGGGGCTTGGT-GCGGGGCTTGGTDesign primers
2876196CGCCCGGACCGCTGCCCGCACCGCTGCCCGCACCGCDesign primers
2880916CGCGCGCGAGCGCGTGCGCGCCCGDesign primers
2881812GCGTCG-AAGTCG-AAGTCG-AAGTCG-AAGTCG-AAGTCGDesign primers
2893065ACCGCAGTTCCCGCAGTTTCCGCAGTTDesign primers
2948041ACGCGACGCTGCGCGACACGCCGCGDesign primers
2993543GCCAC-GCAAC-GCAAC-GCCGC-GCAACDesign primers
3013437TTCGGGTGGCGGCAC-TTCCGGTGGTGGTAC-TTCCGGCGGCGGCAC-CTCGGGCGGAGGCAC-TTCGGGCGGCGGCAC-TTCCGGTGGAGGCAC-CTCAGGTGGCGGCAC-TTCGGGCGGTGGCAC-TTCGGGCGGTGGCAC-TTCAGGCGGAGGCAC-CTCCGGTGGAGGCAC-CTCCGGTGGAGGCAC-TTCGGGTGGCGGCAC-TTCAGGTGGAGGCAC-TTCGGGCGGCGGCAC-TTCCGGTGGAGGCAC-TTCCGGTGGAGGCAC-CTCAGGTGGCGGCAC-TTCGGGCGGTGGCACDesign primers
3013768GGTCACGGCAATGGTGGCGGCCACGGCGATGGCGGCGGTCACGGCCACGGTGGTDesign primers
3013987GGC-GGT-GGC-GGC-GGT-GGC-GGT-GGC-GGT-GGC-GGT-GGC-GGT-GGC-GGT-GGC-GGT-GGC-GGT-GGCDesign primers
3014048ACGGCGGCGGCGGCA-ACGGCGGCGGCGGCA-ACGGCGGCGGCAACGDesign primers
3014094CGGCGGCAACGG-CGGCGGCAACGG-CGGCGGCAACGG-CGGCGGCAACGG-CGGCGGCAACGG-CGGCGGTCACGG-CGGCGGTCACGGDesign primers
3014202CGGCAA-CGGCAA-TGGCAA-CGGCAGDesign primers
3047957CGA-CGA-CGG-CGA-CGA-CGA-CGG-CGADesign primers
3049864GCGCGCCG-CCGCGCCG-CCGCGCCGDesign primers
3073334GCTCGGCGCGGCACGGCTCGGCTGGDesign primers
3088933AGCACGATCACGAACACGAGGACGDesign primers
3123395GCCGCGAGCGCGGCGAGCACCGCGAGCDesign primers
3135017GCCGCTGCCCCTGCGGCTGCCGCADesign primers
3154076CG-GC-GC-CG-GC-GA-CA-GC-GC-CC-GC-GCDesign primers
3168148CGCCGGCACCGGCGCCCGCACCGGDesign primers
3168789CGCCGCCGTCGCCGTCGCGGCCGCCGCGGCDesign primers
3191558AACATCACCAATATCACCAACATCAACDesign primers
3281500CGGCCCCCAGGGCCCCCACGGGCCCCADesign primers
3397014GCACGA-TCACGA-TCACGA-TCACGA-TCACGADesign primers
3430634TGAATGCGTTGATTGCGTTGAATGCCTDesign primers
3468212CCGGCGCGCCTTCGCCGGTCGCACCTTCGCCGGCCGCACCTTCGCDesign primers
3480038ATCGGCGTTGGCGTTGGCGTTGGC-GTCGGCGTTGGCGTTGGCGTTGGC-GTTGGCGTTGGCGTCGGCGTCGGCDesign primers
3480207ACTACGCGTGATCTACACGTGACCTACGCGTAADesign primers
3495994CGGGCCCGGCCCCGGGGCCGGGCCDesign primers
3528145TCATGAATCAGCCCGTCACGCTCGTGGATCAGCCCGTTTCGCTCATGAATCAGTCCATCCCGTDesign primers
3528277ATCAGCCCATCCCGCTCGTGGGTCAGCCCATTTCGCTCATGGACCAGCCCGTCACGCTCATGGACCAGCCCGTCACGCTCGTAGDesign primers
3564104CGT-CGT-CGT-CCT-CGT-CCT-CGT-CGTDesign primers
3565211CGCCGCGCGCGGCCGCACGCCGCTGCTCGCDesign primers
3574957CGAGCAGCACGCCGCGCATCACGCCCGGCAGCACGCDesign primers
3680264CGATCAGGGACGCCCGGTTAGGGACGCCCGGTCAGGGACGCCDesign primers
3722230GCGCTGCGGCGCGATGCCGCGCGCGACGGCDesign primers
3752700TGCGGCAGCCTTCTTCGCAGGGGCAGCCTTCTTGGCGGGCGCAGCCTTCTTCGCDesign primers
3752876CCTTCTTCGCAGCAACCTTCTTCACTGCGACTTTCTTGGCGGCAACCTTCTTCGCAGCGGDesign primers
3752954CCTTCTTCGCGGCGACCTTCTTGGCTGCAACCTTCTTCGTTGCGACCTTCTTGGCTGCGACCTTCTTCGCAGCGGDesign primers
3753047CCTTCTTCGCGGCAACCTTCTTCACCGCGACCTTCTTCGCAGCAADesign primers
3768811CCGCCGCGGCCGCCGTCGCCACCGDesign primers
3846838CGACCGCGACGGCCACCGCGACCADesign primers
3865598CCACTCAAG-CCGCTCAAG-CCGCTCAAG-CCGCTCAAGDesign primers

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