Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Bifidobacterium thermophilum RBL67

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
11209	CGATCAGCATGATCAGCACGATCAGCA	Design primers
80222	GGTGTGTTCGGCTGTGATGCATTCGGCTGTGATGCATTCGGCTGT	Design primers
90566	TGGCCTG-TGGCTGG-TGGCTGG-TGGCTGG-TGGCTGG-TGGCTGG	Design primers
91326	CAAGAAGCAACAAAGAAACAACAAAGAAGCAAA	Design primers
104811	GTGCCGGGGACGGTGTCGGGGACGGTGTCGCGGACG	Design primers
122258	CTCCCGCGTTCCCCCGTGTTCTCCCGTGTT	Design primers
133293	CGCGTGTGA-TGCGTGTGA-TGCGTGTGA-TGCGTGTGA	Design primers
142372	CCGCCTCTGCCTCCGCCCCCGCCT	Design primers
148396	GGGCTGGTGGTGCTGCGGGTGCGGGTGGTGCTGCGGGTGCGGGTGGTACTGCGG	Design primers
157859	TCGCCGACATTCCCCCCGACATTCCCCCCGACATTC	Design primers
162351	TCCACCAATGTCAATCAATGTCCGCCAATG	Design primers
162813	CAGAGCCTCGAC-CAGAGCCTCGAC-CAGAGCTTTGAC	Design primers
171393	GCAGTGTATAGCGTTGTATAGCCGTGTATAGGAATGTATA	Design primers
180028	TAGTGCGAATACAGGTAGCACGAATACAGGTAGCGTGAACACAGG	Design primers
184424	TACGCATTCACACACATTCACACACATTCA	Design primers
190607	CCGGTACATTCCTAGTACATTCCTGGTGCATTC	Design primers
218982	CGTGTATTGTATCATTTATTGTATCATTTATTGTAT	Design primers
224717	GGCAGTGGCGGCAGTGGTGGCAGTGAC	Design primers
225385	TGGTGC-CGGTGC-CGGTGC-GGGTGC	Design primers
285495	GAAGACCGCAACCAA-GAAGACCGCAACCAA-GAAGACCACCACGAA	Design primers
289382	TGCGTCATGCGGTATGTCATGCGGTATGTCATGCGG	Design primers
292131	CAACCGGTTCAATCCGGTTCCATTCGGTTC	Design primers
303618	GTGCCGTTTGGTGCTGTGTGATGCCGTTTG	Design primers
326378	GAAATCATGCTGAAGCAATCACGCTGAAGTAATCATGCTGAA	Design primers
326638	CGCAGTCGCAGCCGCAATCGCAGC	Design primers
336755	AGTGAGAGTTATGCAGATTCGGTAGTGAAAGTTATGCAAATCTGGTAGTCAAAATCATGCAGATTCGGT	Design primers
392291	CGTCCGTCTAAATCCGTCTAGGTCCGTCAA	Design primers
405218	CGACGGAACCGCCGGAACCGCCGGAAC	Design primers
409402	CGTATTGCA-CGTATTGCA-TGTATTGCA	Design primers
432375	TCGGCGGATCGACGGATCTGCGGATTGGCGGA	Design primers
437248	AATCGGAACCCACAGTCGGAACCAACAATCGGAACCTAG	Design primers
439337	GTGTGGTGGCTGGTGTGTTGGCTTGTGTGTTGGCGG	Design primers
454273	GTGTGGTGGCTGGTGTGTTGGCTTGTGTGTTGGCGG	Design primers
481927	GTGTGGTGGCTGGTGTGTTGGCTTGTGTGTTGGCGG	Design primers
486402	GTGTGGTGGCTGGTGTGTTGGCTTGTGTGTTGGCGG	Design primers
489047	CCGGAACGCCGGAGCGCCGCAACG	Design primers
501402	GTGTGGTGGCTGGTGTGTTGGCTTGTGTGTTGGCGG	Design primers
505864	CCGTCCAAGCCGACTACTCCGAGTAAGCCGACTACTCCGTCTAAGCCGACGACG	Design primers
527558	CGATCAGTACGGTCAGTACAATCAGTA	Design primers
550054	CCCAGCGCAATCAAGCGCAATCAAGCGCAA	Design primers
562408	ATCGACATCGAGACCGACAGCGAC	Design primers
576397	CCTGACGACTTCAATGCCGACGATTTCAATCCTGACGACTTCCTG	Design primers
613073	TCCGTGTCATCGTTTCCGTGTTGTCGTTTCCGTGTTGTCGTT	Design primers
613227	TGGTTTGGCTTGGTCTGGTGTGGTT	Design primers
624410	CGACGACAACGACGACGATGACGA	Design primers
686045	CGGCGCCGCCTTGAGCGGTACCGCTTTGAGCATCACCGCCTTGAG	Design primers
699741	ATGGGCGAG-ATGAGCGAG-ATGGGTGAG-ATGGGTGAG-ATGGGTGAG	Design primers
705596	CTGTCA-CGGTCA-CGGTCA-CGGTCA	Design primers
710839	AATGCATGCTGAAACGCATACTGAAATGCACGCTGC	Design primers
715191	CTGCGC-TTGCGC-TTGCGC-TTGCGC	Design primers
715764	ATCGTCGAA-GTCGTCGAA-GTCGTCGAA	Design primers
716402	TGGCGGTGGTTC-CTGCGGTGGTTC-CTGCGGTGGTTC	Design primers
723638	TGGCGGCGG-TGGCGGCGG-TGGCGACGG	Design primers
727518	ATGACCAGAAGG-ATGGCAAGAAGG-ATGGCAAGAAGG-ATGGCAAGAAGG	Design primers
734468	CCTGCCGACACCGGTCTTACTGACACCGGTCCTGCCGACACCGAC	Design primers
736018	GACAAGGGCAAGGCCAAGGCCAAG	Design primers
746947	CCATCGCAAGCAATCGCAAGCTATCGCAGG	Design primers
817077	CCGACACCTGATCCGACGCCTGACCCCACGCCTGATCCGACGCCTGAC	Design primers
837259	CGGCTGA-CGGCTGA-CGGTTGA-CGGCTGT	Design primers
845788	TCAGAGCGCCGGAT-TCAGAGCGCCGGAT-TCAGAACGCCTGAT	Design primers
860354	ACGGATAT-GCGGATAT-GCGGATAT	Design primers
993419	CGCGTCTACGGAGCTTCTACGGAGCGTCTAGGG	Design primers
1021166	GCGGTCATGCCGTCATGCGGTCATGCCGTCAT	Design primers
1069809	CCAGTCTGTCTGCCAGTCGGCAGTCCGTCTGCCAGTCGGCAGTCCGTCTGTCAGTCG	Design primers
1138474	CGAGGGCGTGGGCGATGGCGCGGG	Design primers
1138746	TGTGTTGTGTGTGTGGTGAGTGTGTGTTGCGTT	Design primers
1146014	GCTACGCTAAGCCACGCTAGGTTAC	Design primers
1165069	TGTCGTCATTTGTCGTCATCTGTCATCGTTTATCGTCGTT	Design primers
1331568	GATGTCGACGTCGATGCCGATGCC	Design primers
1343648	GACGGCAGGACCGCAGGACGGCAC	Design primers
1348174	CGGTGTTTCGCCGTGTTACGCGGTGTGTCA	Design primers
1395519	ACGTCGGCAACGTTGGCAGCGTCGGCA	Design primers
1404705	CCGACGGCGACGCAGACGCCGACTCAGACGCCGACT	Design primers
1453225	CACCACCCCGCACCACCATGAACCACCCCG	Design primers
1476179	CTTGCCTA-CTTGCCTA-CTTGACTA	Design primers
1482558	GTCGGCGGCATCGGCGGCTTCGGCGGC	Design primers
1485371	GCTTGTCCAGCTTGTTCAGCTTGTCCA	Design primers
1493927	GCGGTTCAGCGCGATTCAACGCGATTCAAC	Design primers
1499469	CACCACAATCACGACAATCACCACAAT	Design primers
1560522	CAACTGACACCCACTGATACCAACTGATAC	Design primers
1565555	GAATTATTCGAATTATGCGAAGTATTC	Design primers
1576658	CACGACATGGGTGAT-CACGACATGGGTGAT-CACGACACGGGCAAT	Design primers
1586207	GCGGGCGCGGTGGCGTCGGTGGGCGCGGTGGCGTCGGTGGGGCCGGTGGCGTCG	Design primers
1609163	GCGGCAGCGACAGAGGCAGCGGCC	Design primers
1641498	TCGTCCTTGTCCTCGTCATCGGCC	Design primers
1672838	ACAGCACGCACAGGACGCACAGCACGC	Design primers
1679246	GGCCTGGGCCGCAGCCTGGGCGGCCGCCTGCGCCGC	Design primers
1690715	TTCAGAATCCTCGAGAATCCTCAAGAATCC	Design primers
1694279	TGCGGCGGA-GGCGGCGGA-GGCGGCGGA	Design primers
1705057	GTGGATTGAGTTGATTGAGTGGATTGG	Design primers
1707696	GCTTGAACCGGCTGATTGAACCGGCTGATTGGACCGGCT	Design primers
1714075	GTATCGGTCGCG-GTCTTGGTCGCG-GTCTTGGTCGCG-GTCTTGGTCGCG	Design primers
1716100	GGTGCAGGTGAACCGGTGGATGTAGGTGAACCGGTGGGTGTAGGTGAACCTGCG	Design primers
1725580	CTGTAGCCAGCCGTAGCAAGCTGTAGCCAG	Design primers
1784566	TGATGCTGACGCCGATGCTGATGT	Design primers
1797612	CGGATCCGGTCTGATCCGGTCTGTTCCGGT	Design primers
1830959	TTGATGTGTTGACGTGTTGATGCG	Design primers
1832413	CCGAACTACCGAAGTACCGGACTA	Design primers
1838403	GGCTGGTGCGGCGGCCGGTTCGGCGGCTGATTCGGC	Design primers
1839814	CTGCCTGGTTTTGCCCGGTTCTGCCAGATT	Design primers
1844419	GCC-GCC-GCC-GGC-TCC-GCC-GCC-ACC-ACC-GCC	Design primers
1844455	GCCACCACCGGAGAAGCTACCGCCAGAGAAGCTACCACCAGAGAA	Design primers
1921929	GGTAGAGCGAGGCGCGGTAGGGCGGGGTGCGGTAGGGCGGGGTGC	Design primers
1923391	CAGACAAACCGACAAACAGACAAA	Design primers
1944605	CGGTCGTTACGGTCATTACGGTCGTTA	Design primers
1944872	TCACCGCGTTCATTGCCGCGTTCATTGCCGCGTTCA	Design primers
1963048	ACGGCGAAGACCACAGCAAAGACCACCGCGAAGATC	Design primers
1990682	TCTTTCGTGGTGTCTGTCGTGGTGTCTGTCGTGATG	Design primers
2037186	AAATCAGCCAAAATCTGCCAAAATTCGCCA	Design primers
2038839	AGCAGACCAAGGAGACCAAGCCGACCA	Design primers
2039099	CCGCAAACGCCGAAAACGCCGAAAACG	Design primers
2071618	GCACGTATCGCCACGCATCGGCACATATCA	Design primers
2079546	CGGCGGTTCACACCAC-CGGCGGTTCACACCAC-CGGCAGCTCACATCAC	Design primers
2092204	TTGCGTATG-TTGCGTATG-TTGCGGATG	Design primers
2131224	GATGACGAGATGACCAGATGACGG	Design primers
2161688	CCGTCTTTGTGGAAGCCGCCTTTATGGAAGCCTCCCTTGTGGAAG	Design primers
2168144	GGGTTGTCGGATTCGGCGTTGTCGGATGCAGTGTTGCCGGACTCG	Design primers
2183043	ACGCAGGA-ACGCAGGA-ACGCAGAA	Design primers
2197039	TGTTCCCGATTGC-CGTTCCCGATTGC-CGTCCCCGATTGC	Design primers
2254545	ACCGGCACCAGCAGCGGCACCAGC	Design primers
2259805	CGCCCTCGCCTGCTGCGCCTTCGCCTTCCGCGCCGTCGCCTTCCGCGCCTTCGCCTTCCG	Design primers
2283909	GATGTTTCAGATGTTGCAGATGTTTCA	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

11209

CGATCAGCATGATCAGCACGATCAGCA