Microsatellites /Tandem Repeats database

Genome: Thermus scotoductus SA-01

Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
201220CAGGCC-CAGGGC-CAGGGC-CAGGCCDesign primers
214469CCTCCACCCCCACCTCCGCCTCCCDesign primers
246567GGCCCT-GGCCCT-GCCCCT-GGCCTTDesign primers
298968GCCCTG-GCCGTG-GCCGTG-GCCCTGDesign primers
320818GGTGGTGATGGTGGTGGTGATGGTGGTGGGDesign primers
341475CCAGGG-CCAGGG-CCCGGG-CCAAGGDesign primers
359010CGAGCGGGAGGAGCTTAAGGCCGAACGGGAGAGGCTTAGGGCCTTGCAGGAGGAGCTTAAGGCDesign primers
368982AGGAGGTGGAGGCGGAGGAGGAAGDesign primers
373307GCCATGGCCAAGGCCAGGGCCCTGDesign primers
373637CCGTGGCCCTGGCCGAGGCCCTGGDesign primers
375650ACCCTG-TCCCTG-GCCCTG-GCCCTGDesign primers
389452CCAGGGCCATGGCCAGGGCCAGGTDesign primers
448422TGGAGGTGGAAGGGGAGGTGGAGGDesign primers
502462CCACGAGCACGAACACGAGCACGADesign primers
607134CCGTCCTCCTTTCGCCCTCCTTTTGTCCTCCTTDesign primers
610144GCTGTCGGGTCCTGTCGGGTAGTGTCGGGTCTTGTCGGGTDesign primers
645955CGATGGCGGCGTTGGCGGCGCTGGCGGDesign primers
676704AGGGTCAGGGCCAGGTTCAGGGTAAGGCTCDesign primers
727537TGGAGGGGGAGGCGGAGGTGGCGGDesign primers
818320AGCTCCAGTTCCAGCTCCAGCCCCDesign primers
822899GAGGCC-AAGGCC-AAGGCC-GAGGCCDesign primers
822930CCGAGGCCAAGGCCAAGGCGGAGGDesign primers
837795TTCCGCCTGGGCCAGGGCCAGTTCCGCCTGGGCAAGGGAAAACTCCGCCTGCAACAGGGCCAGDesign primers
838079GGGAGAGGGTGAGGGAAAAGGAGADesign primers
903344GTGGCCCTGGCCGTGGCCTTGGCCDesign primers
926712GGTGGAGGGGGAGGAGGAGGTGGGDesign primers
960231CGCCGGTATGCGCCGGAATACGGCGGTTTGDesign primers
967128GAACTACCTGGTCTACTACCTGGTGGTCTACCTGGTDesign primers
972128ATGGCCTCCTTGATGGTTTCCTTGATGGCCTCGTAGDesign primers
987543GAGGTGGAGCTGGCGGTGGTGGTGDesign primers
993504CCTGAAGCCGGCCCTGGAGCGGGCCTTGAAGCGGGCDesign primers
1003977CCAGGGCCCGGGCCACGGACAGGGDesign primers
1004704GGCCAGGGCTAGGGCCAAGGCCAADesign primers
1048029TCTTTGCCCTCCTTGCCCTCCTTGCCCDesign primers
1173775CGGTCACGGGC-GCGTCACGGGC-GCGTCACGGGCDesign primers
1173810AGCCCGTATCTTGTGGCCGTATCTTGTGGCCGTATCTTGDesign primers
1260731CCACCT-CCACCT-CCCCCT-CCCCCTDesign primers
1263119CCTCCTGCTCCTCCTCCACCTTCTDesign primers
1313647CCCTGGCCCGGGACCTGGCCCTGATCCTGGDesign primers
1395538GGAGGT-GGAGGT-GGCGGT-GGCGGTDesign primers
1466849CCCCCTTGCCCCCCGCCTTGCCCTCACCCTTTCCCCDesign primers
1485431CCAAGG-CCAGGG-CCAGGG-CCAAGGDesign primers
1539817CTGCGGTGG-TTGCGGTGG-TTGCGGTGGDesign primers
1539880GTTTGCGGTGGTTGCGGTGGTTGCGGTDesign primers
1542540CATCCACCGCAACCACCGCAACCACCGDesign primers
1583295CATCCACCGCAACCACCGCATCCACCGDesign primers
1583436CTGCGGTGG-TTGCGGTGG-TTGCGGTGGDesign primers
1598305CTCCTCCCCCTCCTCACCCTCCTCTCCDesign primers
1718412TGGGGCGGTGGGGTGGTGGGGCGCDesign primers
1839666GGCCACGGCCAAGGCCGCCGCCACDesign primers
1843339CCCCGACTCCGAGCCCGAACCCGADesign primers
1925020AGGCCC-TGGCCC-AGGCCC-AGGTCC-TGGCCCDesign primers
2040914CTGGCC-CTGGCC-CGGGCC-TTGGCCDesign primers
2062243CC-AC-CC-CA-AC-CC-CC-TC-CC-CC-AC-GCDesign primers
2067095GCCACCGCCGCCGCCATCACCACCDesign primers
2078783CTTTCTTCTCCATCCTTCTCCTTTCTACGCDesign primers
2111759ACCGCC-ACCCCC-ACCCCC-ACCCCCDesign primers
2132799AGG-AGG-GGG-AGG-TGG-AGG-TGG-AGGDesign primers
2161735CTGGCCCTGGGCCTTGCCCTGGCCDesign primers
2177654CCTCCTACTCCTCCTCCCCGTCCTDesign primers
2178758GCCCTGGCCCGGGCCCTGGCCCCGDesign primers
2215636CCCTTC-CCCTTC-CCTTTC-CCCTTCDesign primers
2232877GCCCTGGCCCCGGCCATGGCCCTCDesign primers
2303472CCGCCACCCCCACGGCCACCGCCADesign primers
2325714AGGCCATGGCCAAGGCAAAGGCCCDesign primers
2336083CCTAGATCGGCCGTAAGGCTATCTAGGTCAGCCGCAAGGCTATCTAGGTCAGCCGTAAGGCTADesign primers
2336231CTCCACCTCCCCCTCCACCTCCCCDesign primers

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