Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Thermus scotoductus SA-01

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
201220	CAGGCC-CAGGGC-CAGGGC-CAGGCC	Design primers
214469	CCTCCACCCCCACCTCCGCCTCCC	Design primers
246567	GGCCCT-GGCCCT-GCCCCT-GGCCTT	Design primers
298968	GCCCTG-GCCGTG-GCCGTG-GCCCTG	Design primers
320818	GGTGGTGATGGTGGTGGTGATGGTGGTGGG	Design primers
341475	CCAGGG-CCAGGG-CCCGGG-CCAAGG	Design primers
359010	CGAGCGGGAGGAGCTTAAGGCCGAACGGGAGAGGCTTAGGGCCTTGCAGGAGGAGCTTAAGGC	Design primers
368982	AGGAGGTGGAGGCGGAGGAGGAAG	Design primers
373307	GCCATGGCCAAGGCCAGGGCCCTG	Design primers
373637	CCGTGGCCCTGGCCGAGGCCCTGG	Design primers
375650	ACCCTG-TCCCTG-GCCCTG-GCCCTG	Design primers
389452	CCAGGGCCATGGCCAGGGCCAGGT	Design primers
448422	TGGAGGTGGAAGGGGAGGTGGAGG	Design primers
502462	CCACGAGCACGAACACGAGCACGA	Design primers
607134	CCGTCCTCCTTTCGCCCTCCTTTTGTCCTCCTT	Design primers
610144	GCTGTCGGGTCCTGTCGGGTAGTGTCGGGTCTTGTCGGGT	Design primers
645955	CGATGGCGGCGTTGGCGGCGCTGGCGG	Design primers
676704	AGGGTCAGGGCCAGGTTCAGGGTAAGGCTC	Design primers
727537	TGGAGGGGGAGGCGGAGGTGGCGG	Design primers
818320	AGCTCCAGTTCCAGCTCCAGCCCC	Design primers
822899	GAGGCC-AAGGCC-AAGGCC-GAGGCC	Design primers
822930	CCGAGGCCAAGGCCAAGGCGGAGG	Design primers
837795	TTCCGCCTGGGCCAGGGCCAGTTCCGCCTGGGCAAGGGAAAACTCCGCCTGCAACAGGGCCAG	Design primers
838079	GGGAGAGGGTGAGGGAAAAGGAGA	Design primers
903344	GTGGCCCTGGCCGTGGCCTTGGCC	Design primers
926712	GGTGGAGGGGGAGGAGGAGGTGGG	Design primers
960231	CGCCGGTATGCGCCGGAATACGGCGGTTTG	Design primers
967128	GAACTACCTGGTCTACTACCTGGTGGTCTACCTGGT	Design primers
972128	ATGGCCTCCTTGATGGTTTCCTTGATGGCCTCGTAG	Design primers
987543	GAGGTGGAGCTGGCGGTGGTGGTG	Design primers
993504	CCTGAAGCCGGCCCTGGAGCGGGCCTTGAAGCGGGC	Design primers
1003977	CCAGGGCCCGGGCCACGGACAGGG	Design primers
1004704	GGCCAGGGCTAGGGCCAAGGCCAA	Design primers
1048029	TCTTTGCCCTCCTTGCCCTCCTTGCCC	Design primers
1173775	CGGTCACGGGC-GCGTCACGGGC-GCGTCACGGGC	Design primers
1173810	AGCCCGTATCTTGTGGCCGTATCTTGTGGCCGTATCTTG	Design primers
1260731	CCACCT-CCACCT-CCCCCT-CCCCCT	Design primers
1263119	CCTCCTGCTCCTCCTCCACCTTCT	Design primers
1313647	CCCTGGCCCGGGACCTGGCCCTGATCCTGG	Design primers
1395538	GGAGGT-GGAGGT-GGCGGT-GGCGGT	Design primers
1466849	CCCCCTTGCCCCCCGCCTTGCCCTCACCCTTTCCCC	Design primers
1485431	CCAAGG-CCAGGG-CCAGGG-CCAAGG	Design primers
1539817	CTGCGGTGG-TTGCGGTGG-TTGCGGTGG	Design primers
1539880	GTTTGCGGTGGTTGCGGTGGTTGCGGT	Design primers
1542540	CATCCACCGCAACCACCGCAACCACCG	Design primers
1583295	CATCCACCGCAACCACCGCATCCACCG	Design primers
1583436	CTGCGGTGG-TTGCGGTGG-TTGCGGTGG	Design primers
1598305	CTCCTCCCCCTCCTCACCCTCCTCTCC	Design primers
1718412	TGGGGCGGTGGGGTGGTGGGGCGC	Design primers
1839666	GGCCACGGCCAAGGCCGCCGCCAC	Design primers
1843339	CCCCGACTCCGAGCCCGAACCCGA	Design primers
1925020	AGGCCC-TGGCCC-AGGCCC-AGGTCC-TGGCCC	Design primers
2040914	CTGGCC-CTGGCC-CGGGCC-TTGGCC	Design primers
2062243	CC-AC-CC-CA-AC-CC-CC-TC-CC-CC-AC-GC	Design primers
2067095	GCCACCGCCGCCGCCATCACCACC	Design primers
2078783	CTTTCTTCTCCATCCTTCTCCTTTCTACGC	Design primers
2111759	ACCGCC-ACCCCC-ACCCCC-ACCCCC	Design primers
2132799	AGG-AGG-GGG-AGG-TGG-AGG-TGG-AGG	Design primers
2161735	CTGGCCCTGGGCCTTGCCCTGGCC	Design primers
2177654	CCTCCTACTCCTCCTCCCCGTCCT	Design primers
2178758	GCCCTGGCCCGGGCCCTGGCCCCG	Design primers
2215636	CCCTTC-CCCTTC-CCTTTC-CCCTTC	Design primers
2232877	GCCCTGGCCCCGGCCATGGCCCTC	Design primers
2303472	CCGCCACCCCCACGGCCACCGCCA	Design primers
2325714	AGGCCATGGCCAAGGCAAAGGCCC	Design primers
2336083	CCTAGATCGGCCGTAAGGCTATCTAGGTCAGCCGCAAGGCTATCTAGGTCAGCCGTAAGGCTA	Design primers
2336231	CTCCACCTCCCCCTCCACCTCCCC	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

201220

CAGGCC-CAGGGC-CAGGGC-CAGGCC