Microsatellites /Tandem Repeats database

Genome: Flavobacteriales bacterium HTCC2170

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
112344AAAGGAGATAAAGGAGACAAAGGTGATDesign primers
112757TAAAGGTGA-CAAAGGTGA-CAAAGGTGADesign primers
112920AAAGGTGATAAAGGTGACAAGGGTGATDesign primers
113181AAAGGTGACAAGGGTGACAAGGGTGACDesign primers
113280AAAGGTGATAAAGGTGACAAGGGTGATDesign primers
113622AAAGGTGATAAAGGTGACAAGGGTGATDesign primers
113793AAAGGTGATAAAGGTGACAAGGGTGATDesign primers
113876AGGAGATAC-TGGAGATAC-TGGAGATACDesign primers
113920ATGGAATCAACGGAACCAACGGAATAGACGGAACCAACGGAATAGACGGAACCADesign primers
114143TAAAGGTGATAAAGGCGACAAAGGTGADesign primers
114303GATAAAGGTGACAAAGGTGACAAAGGTDesign primers
114918AAAGGTGACAAAGGAGACAAGGGTGACDesign primers
115278AAAGGTGACAAAGGAGACAAGGGTGACDesign primers
115638AAAGGTGACAAAGGAGACAAAGGTGATDesign primers
115736TAAAGGAGATAAAGGCGACAAAGGAGADesign primers
115842GCTAAAGGA-GATAAAGGT-GACAAAGGT-GATAAAGGT-GATAAAGGT-GACAAAGGTDesign primers
118493AAGGTGAAAAAGGTGACACAGGTGAAADesign primers
118619AAGGTGAAAAAGGTGACACAGGTGAAADesign primers
119825AAGGTGAAAAAGGTGACACAGGTGAAADesign primers
121031AAGGTGAAAAAGGTGACACAGGTGAAADesign primers
194166TTATTACCACTATTTACCACTATTTACCACDesign primers
285627TGGCGG-TGGAGG-TGGAGG-TGGAGGDesign primers
285945CGGTGGAGGTGGGGGTGGAGGTGGDesign primers
592095GGCATTTAAAGGGTTTTAAAGGGTTTTAAADesign primers
611568ATTCAAATTCAGATTCGAATTGAADesign primers
646116GTACAAGTAGAAGTACTAGGACAADesign primers
813248TTTATCTTTAACTTTTTCATTATCDesign primers
834774AAACCCAAATCCAATCCCAAACCTDesign primers
927933GCT-GGT-GGT-GGT-GGT-GGT-GGT-GGTDesign primers
936914TTTTTTTCCTTTTTTCTTTTTTCCDesign primers
1126313TTCTTTTCATTTCCTTTCTGTTTTTDesign primers
1206056GAA-GAA-GAG-GAA-GAG-GAA-GAA-GAADesign primers
1341114AGAAAAAAAGACAAAAAGAAAATADesign primers
1374711TATCATTAACATTATCATTATCGTDesign primers
1534957TACCGA-TACCGA-TACCTA-CACCGADesign primers
1567577CTATTCCCAGGGTATTCCCAGTCTATTGCAAGGDesign primers
2132961TTTCTTTTTCTGTGTCTTTTTCCTDesign primers
2245387CGAATCCGCCTCCGCCGAATCCGCCGCTGAAGCCTCCGCCTCCGCDesign primers
2398811GCTTTTGGTTTTGTTTTTTCTTTTDesign primers
2583110GTAAAAAGGAGGAAAAACGAGTAAAAAGGGDesign primers
2606923TTTGTTTTGATTTATTTTTTCTTGTDesign primers
2632457CCAGAACCCGAGCCAGAACCAGAACCAGAACCGAAGDesign primers
2708135CCC-TTC-TTC-CTC-TTC-TTC-CTC-TTC-TTCDesign primers
2869541TTAAAAAGATTTAACCAGATTTAAAAACATDesign primers
2898447TAAAACA-TGAAACA-TGAAACA-TGAAACADesign primers
3151227AA-AA-AA-GA-AG-AA-AG-AG-AA-AA-GA-AA-AA-AADesign primers
3164481AAAAAGAAAAAAAACAAATAAATAADesign primers
3265897GTATTGTCTTTTATTGAATTGTAATDesign primers
3301900TTTTTATTTTTTTCTTTCTTTTTTGDesign primers
3474476TTTAAT-TTTGAT-TTTGAT-TTTGATDesign primers
3621370TTTTTTTCTTTTTTCATTTTTCTTTDesign primers
3672945ATACATTACAAAACAATACTATACADesign primers
3862107CATTAT-CATTAT-CACTAT-CATCATDesign primers

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