Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Robiginitalea biformata HTCC2501

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
67301	GGCGGCGGGGGCGGTGGCGGCGTC	Design primers
106785	CCTCGGGCTTTTCGGCAGCGGGCTTTTCCGCCTCCGGCTTTTCGT	Design primers
271581	TTTGGATTGTACCCCGGGGCCCGTTTTGGATTTCACCCCCGGGCCTGTTTTGGATTTCACCCCGGGGCCCGT	Design primers
271654	TTGGACTTGACCCCTGGCCCTGTTTTGGACTTGACCCCCGGGCCTGTTTTGGACTTCACTCCCGGGCCTGTTTTGGACTTCACCCCAGGGCCTGTTTTGGACTTCACCCCAGGGCCTGTT	Design primers
291099	CCGGTTCGCTTTCCGGCTGGCTTTCCGGTTGGCTTT	Design primers
294203	TCAAATCTTCAAATCGGCAAATCTTCAAATCA	Design primers
309920	TTTTCTTTTATTTTTTCTTCGTTTC	Design primers
418985	TCCACCCGTTTATACCCGTTTATACCCGTT	Design primers
528689	GCCCATTCCTGCCCATTTCTGCCAATTCAT	Design primers
592664	TCAGTTGTGTTTCCGGTTGTGTTTCCGGTTGTGTTT	Design primers
598961	TCCAGTTCCCGTTCGAGTTCCAATTCCAGTTCCGGT	Design primers
651433	GAATGCGGTGGGATCGAAGGCGATGGGTTCGAATGCCGGGGGATT	Design primers
679148	ATTTGAAGATTTGAAAATTTGGAGATTTGAAG	Design primers
687970	CGGACCCGGACGGGGACCCGGAGC	Design primers
688818	CGCCGATCCCTCCGATCCCACCGATCC	Design primers
998067	GAGGCAGCCCTACTTACGGCGGAAAGGCAGAACTTCTTACGGCGGAAAGGCAGCGCTTCTTACGGCGGA	Design primers
1071384	GGTGCCGGGCTCCGGGGTGTTGGGCTCCGGGGTGTCCGGCTCTGG	Design primers
1094114	CTCCTCCACCTCCTGCTCTTCCTC	Design primers
1120079	GGGACCCGGGAGAAGAACTGTAGGCCCGGGGGAAGAACTGGAGGCCCCGGGGAAGAACTG	Design primers
1133951	ACCGGACCGAAACGGACCCGTCCGG	Design primers
1153771	CGTTTGCTGTCGTGTTTGCTGCTGCTGTCGTGTTTGCTGTTGCTGTCGTGTTCGCTGTTGCTGTCGTGTTTG	Design primers
1284197	CGATTTGCCAATTTGCCAATTTGC	Design primers
1301694	ACCGCCCCCGAAGCCGCCCCCGAAACCGCCGCCAAA	Design primers
1312108	CCAACCCCAGCCCCAACCCCAGCC	Design primers
1316546	TTTGTCCTT-TTTGTCCTT-TTTGTTCTT	Design primers
1328970	TCGGGTTGGGGTTCGGGCTCGGGG	Design primers
1330077	CGTCGTCGTCGTCGTCCTCATCGT	Design primers
1357376	CTCTACTGCCGGCATTCCCACTATTGCCGGCATTCCCTCAACTACCGGCAATCC	Design primers
1441904	GTTGAACGAATAAGCCCGGAACCATTGAACGAATAAGGCGGGAGCCGTTCAACGAATAAGGCGGGAGCC	Design primers
1451763	CCGGCCCGGATGCCTCAGGCCCGTACGCCTCAGGCCCGGATGCCT	Design primers
1451817	ACGCCTCAGGCCCGGATACTTCAGGCCCGGATACTTCAGGCCCGG	Design primers
1451945	TATAAACCGGATGGCCCGGATAAACGGGATGGCCAGGATAAACCGGATGGACAG	Design primers
1540263	GGGGTATGACGATCGGGGTTACGACGATCGGGGTTACGATGATCG	Design primers
1561603	TTGGTTGTTATTGGAATGGGTTGTTGTTGAAATGGGTTGTTGTTGGAA	Design primers
1570415	ATTTCCCTGCCGGTT-CAATCCCTGCCGGTT-CAATCCCTGCCGGTT	Design primers
1622063	GGCTGTTCCGTCGGCCGGGGGGCTGTTCCGACGGCCGGAGGGCTGATCTGACGTCCGGGG	Design primers
1625331	GGTGTTCATGTTGTGGGGTATTCATCTTGTCGGGTGTTCATGATGTCG	Design primers
1626470	CGGCTC-CGGCTC-AGGCTC-CGGCTC	Design primers
1629943	CTAAATTTAGGCGTAAACCCCACCATTTGGGCGTAAACCCCATCATTTGGGCGTAAACCC	Design primers
1631359	GCGGCTGGGGGATGGGTCCTGGCGGCTGGAGATAGGGTCCTGGCGGCTGGAGATTGGGTCCGG	Design primers
1662761	ATCCTGACCATCCTGGCCATCCTCACC	Design primers
1714676	GATCATGTATAACCCGGGCCAAAGCTATTGTATAACCCGGACCAAAGCTCTTGTATAACCCGGGCCAAA	Design primers
1722568	GAATTTCCCGGCTGCGCTGCAGATTCCCCGGCTGCGTTGCAGATTCCCCGGCTGCGCTGC	Design primers
1759325	GTTTTGCCTGATTCCGGCTGTTTGCCTGATTCCTGCTGTTTGCCTGATTCCTGC	Design primers
1772207	CTTTCTCCCGCAATCGGG-CTTTCTCCTCCAATCAGG-CTTTCTCCTCCAATCAGG-CTTTCTCCTGCAATCAGG	Design primers
1940215	CGGGTGTTGTGTTTCCAGCGGGTATTGTGTTTCCTGCAGGTTTTGTGTTTCCGG	Design primers
1949249	TCAAATCTTCAAATCGACAAATCT	Design primers
1949387	TCAAATCTTCAAATCGACAAATCT	Design primers
2142130	GGAGATCAATTCTTTCCGGGAGACCAATTTGTTCCGGGAGATCAATTTGTTCCA	Design primers
2144476	TTCCCGGGAGATCAATTCTTTCCGGGAGACCAGTTCTTTCCGGGCGATCCATTC	Design primers
2155780	CGTACTGGTACTCGTACCCGTACC	Design primers
2166400	AGGCGAATCGCAGGCTTTGGAAGGCGAATCGCAGGCAATGGAAGGTGAATCGCAGGCCGGGGA	Design primers
2178208	AACCGCTGCCGCAGGAGCCGCTGCCCCAAGAGCCCTTGCCGCAGG	Design primers
2178264	AAAGAGCCCTTGCCGCAGGAGCCCTTGCGGAAGGAGCCGCTGCCG	Design primers
2181557	AATTGACAAATTGACCAATTAACAAATTGCCA	Design primers
2182059	TTACGAGCTTGTCCTGATTTATACGCGCCTGTCCTGATTTATACGCGCCTGTCCGGATTT	Design primers
2224380	TTCCTCCCCTGGGGTTTCCTCCCCGGTAGTTTCCTCCCCGGTGGC	Design primers
2278754	CTGGAAATTTGATCCGGGTGAAAGTTTGATCCGGGTGGAAGTTTTATCCGG	Design primers
2278806	CTGCAGTTTAATTCGGGCTGCAGTTTAATTCAGGCTGCAGTTTAATTCAGG	Design primers
2294358	GGAACCCGGAGAACCCGGAGAACCCGGAGAACCCGGGGAACCGGG	Design primers
2359419	CCCGCTGATCTCCTTCCGGCGGATCTCCTTCCGGCCGATCACCTT	Design primers
2720126	CGATTTGA-AGATTTGA-AGATTTGA-AGATTTGA	Design primers
2720415	ACAAATTG-GCAAATTG-GCAAATTG	Design primers
2790947	GCTGTTGCTGCTCCTGTTGCTGTT	Design primers
2798642	ACCGGCTACGATGCGATTCCGGCCCCGATGCGATTCCGGCTACGAGGCGAT	Design primers
2798733	TCTGCAGGTGCGCCCCAAACCCCCCGAAAGGTGCGCCCCAAACCCCCCGGAAGGTGCGCCCCAATCCCC	Design primers
2807085	TGTCAATTTATCAATTTGTCAATG	Design primers
2839749	TGCCGGGCCCTATTCCAGTTGCAGGGCCCTATTCCAGTTGCAGGGACCTAATCCAGT	Design primers
2886174	CGATTTGGCGATTTGA-AGATTTGAGGATTTGA-AGATTTGAGGATTTGA-GGATTTGAGGATTTGA	Design primers
2949802	TGCCGGAATTGCACC-ATCCGGAATTGCACC-ATCCGGAATTGCGCC	Design primers
2968061	CATCCCGACGGGCCGCCCCGACGGGCCGCCCCGACGGGC	Design primers
3028084	CGGGGCCAACCGGAGTCAACCGGGGCCAATCAGGGCCAACCGGAGTCAACCGGGGCCAATCAGGGCCGACCGGAGTCAACCGGAGCCATCCGGAGCCATCCGGAGCCACC	Design primers
3062813	TCCGGGGAGCAGGCACCATCCGGGGAATCGGCACCATCCGGGGAACAGGCACCA	Design primers
3207284	CGGGCGAAGCGGGTGAAGCGGGTGAAG	Design primers
3209263	CAGGATTCAGAAAAC-CAGGATTCAGAAAAC-CAGGATTCCGGCAAC	Design primers
3268498	CCGTCCCCGTCATCGTCCACGTCC	Design primers
3334443	CCCGGGAAAACCGGGGAAATCCAGGTAAAA	Design primers
3362085	TTTATCAGATTCAGGCCATAACGTTTCAGGTTCAGGCCATAACTTTTCAGGTTCGGGCCATAA	Design primers
3362732	GGTCCAGGTCCGCGTCCAGGTCCC	Design primers
3447662	TTATTACCACATTTTACCACAAATTACCAC	Design primers
3516570	ATTCACCCGACAGGTTTTCGGAAGCGCTCGACAGGTTTTCGGGAGCACTCGACAGGTTTTCGG	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

67301

GGCGGCGGGGGCGGTGGCGGCGTC