Microsatellites /Tandem Repeats database

Genome: Desulfomicrobium baculatum DSM 4028

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
16842CATGCCGAACATCTGGCCGAACATCAGGCCGCACATDesign primers
103361AGGCCGCATGAGGCCGGGTGAGGCCGAGTGDesign primers
213550CCACTGGTGGGG-TGACTGGTGGGG-TGACTGGTGGGGDesign primers
228875CAGTTCGCGCCCGTCGCCCAGCCCGCGCCCGTCCCCCAGCCCGCGCCCGTCGCCCAGCCCGCGCCCGTCGCCDesign primers
228948AGGCCGCGCCTGTCGCAC-AGGCCGCGCCTGTCGCAC-AGGCCGCGCCTGCCGGTCDesign primers
287424CAAGGGGGCAAGGGCGCAAGGGCGDesign primers
363672CGTCTTCGTCTGTGTCTTCGTCATDesign primers
518518ATGGGGGGCAGGGCGGAC-ACGTTGGGCAGGGCGGAC-ACGTTGGGCAGGGCGGAC-ACGTTGGGCAGGGCGGAC-ACGTTGGGCAGGGCGGAC-ACGTTGGGCAGGGCGGACDesign primers
518682CTGCGTGTCTACGTGTCTGCGTGTDesign primers
538337CCATTCACCACTCACCGTTCACCATTCADesign primers
546210AGCGACAGCGGCAGCCACAGCGCCDesign primers
577521CTTGGCCTGGGCCATGGCCTCGGCDesign primers
636391CCCTGGGCCTGGCCGTGGGCCTGGDesign primers
660098GGAGCCGAAGAAGGAAGAGCCCAAAAAGGAAGAGCCGAAGAAGGADesign primers
662709GTTGGAGCTTTGGGAGTGATGGGAGCTATGGGAGTGATGGGAGCTATGGGAGTGDesign primers
667088GCCTGGGTCTGGGCCTGGGTCTGGGCGTGGDesign primers
837353CGCTGGCGCTTGCGCAGGCTCTGGCGCTGADesign primers
837422GGCGCCCAGGACGGAGGCGCCCCGCGCGGAAGCGCTCCGGACGGADesign primers
879676AGGACCAGGATCAGGAGCAGGACCAGCACCDesign primers
1007145GGCATCGTCATCGGCAGCGGCGTCDesign primers
1040080TAAATATTTTTAAATATATATAAATACGTTDesign primers
1159822TGGCGATGGCGCGGGCGATGGCCADesign primers
1331604TATGAATAATTTAAAGAATAATTTGAAGAATAATTTDesign primers
1710892TGAAATTGG-TGAGATTGG-TGAGATTGG-TGAGATTGGDesign primers
1741256AGGAAATGGTGGCGGAAACGGTGGAGGAAAGGGCGGDesign primers
1741293GGAAACGGCGGCGGCAACGGTGGCGGCAACGGTGGCDesign primers
1886464CGGGGCCGTGGCCGAGGCCGGAGCDesign primers
1892286CCCCTCCTGAACAGGCTCAGCCTGAACAGGCTCGGCCTGAACAGGDesign primers
1928338CTGGGCATGGGCCAGGGCCAGGGCDesign primers
2002584GCCACG-GCCACG-GTCACG-ACCACGDesign primers
2019645GGCGTAGGTGTAGGCGCAGGCGTCDesign primers
2201918GAATGGAAGGCAAACTGGAAGGCAAACTGGAAGGCADesign primers
2375341CGCCAC-CGCCAC-AGCCAC-CCCCACDesign primers
2394262CATGCCGGCCCGACATGTCGGCCCGACATGCCGGTCCCADesign primers
2426869AGCCGGGACCGACTCAGTCGGAACCGACGCAGTCGGAACCGACGCDesign primers
2500517TGCTGCTGGTGCTGGTGCTGCTGCCGCTGCDesign primers
2588128TCCCCCTACCC-ATCCCCTACCC-ATCCCCTACCCDesign primers
2645928CCCGGAGCTCGATATCCCGGAGCTCGACATCCCAAAACTCGATATDesign primers
2684384GGACGAACACGGACTGACACGGACGAACACDesign primers
2684421TTAGTCAGTGTTAGTCCGTGTCAGTCCGTGDesign primers
2712056AGGCCGTGGCCGAGGCCCAGGCCADesign primers
2748970CGGACATCCCGGTGGACACCCCGGCGGACATCCGGGDesign primers
2755051CCATCTTCGGCCCCATCCTCGGCGCCCTCTACGGCCDesign primers
2777669TTAAGTT-TTAAGTT-TTAGGTT-TTAATTTDesign primers
2891879TCCCTGCCTCCATCCCTGCCACCGTCCCTGCCTTTADesign primers
2891916GCTGCCTTTATC-GCTGCCTTTATC-GCTGCCTTTACGDesign primers
2891953TGCCTTTATCGC-TGCCTTTATCGC-TGCCTTTCCCGC-TGCCTCTGTCGC-TGCCTTTATCGCDesign primers
2892017TTTACGCTGCCT-TTATCGCTGCCT-TTATCGCTGCCT-TTCCCGCTGCCTDesign primers
2892066TGTCGCTGCCTTTATCGTTGCCTTTGTCGCTGCCTCTGTCGCTGCCTTTATCGTTGCCTTTGTCACTGCCTCTGTCGCTGCCTTDesign primers
2893508ATCCTTCCGTCG-CTGTCTCCGTCG-CTGTCTCCGTCG-CTGTCTCCGTCG-CTGTCTCCGTCG-CTGTCTCCGTCG-CTGTCTCCGTCG-CTGTCTCCGTCG-CTGTCTCCGTCG-CTGTCTCCGTCG-CTGTCTCCGTCG-CTGTCTCCGTCG-CTGTCTCCGTCG-CTGTCTCCGTCGDesign primers
2893683CGTCGCTGCCTCTGTCGCTGCCTTTATCGTTGCCTTTGTCGCTGCCTTTGTCGCTGCCTCTATCGCTGCCTCTATCGCTGCCTCTGTCGCTGCCTCDesign primers
2893780ACCGCTGCCTCT-ACCGCTGCCTCT-ACCGCTGCCTTCDesign primers
2897635TTATCGCTGCCT-CTATCGCTGCCT-CTGTCGCTGCCT-TTGTCGCTGCCT-TTGTCGCTGCCT-TTGTCGCTGCCT-CTATCGCTGCCT-CTGTCGCTGCCT-CTGTCGCTGCCTDesign primers
2899837TCGCTGCCTCTGTCGTTGCCTCCGTCGCTGCCTTTGTCGTTGCCTCTADesign primers
2926267CTGCTTCCGTCG-CTGGTTCTGTCG-CTGCCTCCATCG-CTGCCTCCATCG-CTGCCTCCATCG-CTGCCTCCATCG-CTGCCTCCGTCG-CTGCCTCCGTCG-CTGCCTCCGTCG-CTGCCTCCGTCGDesign primers
2926388TGCCTCCATCGC-TGCCTCCGTCGT-TGCCTCCGTCGT-TGCCTCCGTCGT-TGCCTCCGTCGC-TGCCTCCGTCGC-TGCCTCCGTCGC-TGCCTCCATCGC-TGCCTCCGTCGC-TGCCTCCGTCGT-TGCCTCCATCGC-TGCCTCCGTCGT-TGCCTCCGTCGC-TGCCTCCGTCGCDesign primers
2929898CCATTCACTATTCACTATTCACCATTCACCACTCADesign primers
2930011GGTGAATGGTGAACAGTGAATGGTGATTDesign primers
2930092CCATTCACTATTCACAATTCACTATTCADesign primers
2930917TGAATGGTGAATGATGATTGGTGAATGGDesign primers
2931093ACCTGCCTTTGCCCTGTCTTTGCCCTGCCTTTGDesign primers
2931566TGGTGAA-TGGTGAA-TAGTGAA-TGGTGATDesign primers
2941607AACGGGCAGACACAAAGACAGGGCGGACACAAAGACAGGGCAGACACATAGDesign primers
2941794GCGGCCCTGCGTGGCCGCCCTTCTTCTACCCTGCGTGGCCACCCTTCTTCTGCCCTGCGTGGCCGCCCTTCTTCTGCCCGACGTGGCCGCCCTTCTDesign primers
2944321CCCATTC-ACAATTC-ACAATTC-ACAATTC-ACAATTC-ACAATTCDesign primers
2981228TTTCCACTTTTTACCACTTTTTACCACTCTDesign primers
2991928ACATGCCGC-CCATGCCGC-CCATGCCGCDesign primers
2996177GCCCTTGGTGCTCTTGGTGCCCTTGATDesign primers
3011160CCG-CCG-CCT-CCA-CCG-CCT-CCG-CCG-CCGDesign primers
3121792ACGCCC-ACGCCC-AGGCCC-ACGCCGDesign primers
3198498CTGGACCGGGACCTGAACCTGGCCCTGGCCDesign primers
3203398GCGATG-GCGATG-GCAATG-GCGACGDesign primers
3268966TCAAATTTCAAATCTTAAATTTCAAATCTTAAATTDesign primers
3375719CCGGGGCCGGCCAGGGCCGCTCGGGGACGGDesign primers
3470610CCCCGCCCTGGCCCGCCGCGCCCCGDesign primers
3476757GCGCCTTGACCCGTTGACGGATGCCTTGGCCCGTTGACAGATGCCTTGACCCGTTGACAGDesign primers
3538223GCCTTGGCCTCGGCCATGGCGTTGDesign primers
3580707GGACTGACACGGACGAACACGGACGGGCACDesign primers
3687889GAACCAA-AAACCAA-AAACCAA-AAACCAA-AAACCAADesign primers
3860123CGCTCCGTGCCAGTCCGTGCCGGTCCGTGTDesign primers

Please help us improve this resource by reporting problems, suggestions etc.