Microsatellites /Tandem Repeats database

Genome: Campylobacter jejuni subsp. doylei 269.97

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
41AAACGA-AAACGA-ATACGA-AAACTADesign primers
38713TTTTAAAATATTAAAATTTTTAAADesign primers
38868CTAAATATTTATATAAATATTTACACAAATATTTATDesign primers
57027ATTAAAAATAAACTTAAAATTAAADesign primers
65234AACAAAGACTTAAACAAAGATTTTAATAAAGAGTTADesign primers
75510CACCTAACACTCCTAACACTCCTAACADesign primers
77730GCACACGCACAGGCAAACGCACATDesign primers
103728CCAGTGATTATATCAAGAATGATTATATCAAGAATGATTATATCADesign primers
122619GGCGGT-GGCGGT-TGCTGT-GGCGGT-GGCGGT-GGCGGTDesign primers
129351CCAGTGATTATATCAAGAATGATTATATCAAGAATGATTATATCADesign primers
238965TTTAAGTTCTTTTTCTTTACCTTCATTTTCATTTAGTTCTTTTTCDesign primers
283280AAATTTATA-AATAATATA-AATAATATA-AATAATATA-AATAATATA-AATAATATA-AATAATATA-AATAATATADesign primers
308730CCAGAAGCACCAGAACCACCAGAACCADesign primers
311104TTAATTTTTTGATTTTTTAATTTCDesign primers
339141TTTTTAAAATTTTTTAAATTTTGTTTAAATDesign primers
437155AAAATTAAATAAATTAAAAGAATATDesign primers
453014TTTTTTGTTTTTTTAATTTTATTTTDesign primers
466593TAGCTTTGGCTTTAGCTTTGGCTTDesign primers
499956TATGAA-TATAAA-TATAAA-TATAAADesign primers
595497AAAATTAAAATAACAATTAAAAATDesign primers
596091TAAAATTATAATCAAAATTTAAATDesign primers
616682TATTAATAAATTATAAATAATTTATTATTAAAADesign primers
680082TTTATTTTCTTTTGTTTTTTTTAATDesign primers
689791AA-AA-AA-AG-CA-AA-AA-AA-AT-GA-AA-AA-AA-AG-AADesign primers
707612TTGCTA-TTGCTA-TTGTTA-TAGCTADesign primers
711921ATATTTTATGTTATTTTTTGATTTCTTATGDesign primers
722375ATTTTTTCTAAATTTTTTTTTAATTTTTTTTAADesign primers
762362AAAAAT-AAAAAT-CAAAAT-GAAAATDesign primers
777410AAAAAGTTAGGAGAAAAGTTAGAAAAAAAGTTTCGADesign primers
816514AAAATTTAAAAAAAATTAACAAAAATAAAAAAAACTTAACDesign primers
838977GGT-GGT-GAT-GGT-GGT-GGT-GAT-GGTDesign primers
860498TTCCCTCATTTATCACCTCATTTATCACCTCATTTADesign primers
861993TTGTAGTGAAA-GTGTAGTGAAA-GTATAGTGAAADesign primers
862144TCAAGTTGTAGTTAAGTTGTAGTGAAATTGTAGDesign primers
862284TT-TT-AT-GT-TT-AT-TT-TT-AT-AT-TT-ATDesign primers
879468TTTTTTAAAGTATTTTCAAGTTTTTCAAAGDesign primers
881793TAATTTTTGATAAATTTTGTTTTTTTTTGADesign primers
888768AATATACTATAATTTAAAATAATTTDesign primers
898170ATAAACTAAAAAAAATTAAAATACADesign primers
908242AACTTTTTTTCTAACTTTTCTCCTAACTTTTTATTTDesign primers
915052CACCATTACCTCCATTACCTCCATTACDesign primers
971236TTTTAATTTATTTTAATTTATTATADesign primers
971751ATTTTAAAAAGTTTTGAAAAATTTAGAAAADesign primers
984831AAATTTATA-AATAATATA-AATAATATA-AATAATATA-AATAATATA-AATAATATADesign primers
1002457AAAAAAAAAG-GTAAAAAAAG-GTAAAAAAAGDesign primers
1006828CTTAAAATAA-TTTATTATGA-TTTATTATGA-TTTATTATGA-TTTATTATGA-TTTATTATGADesign primers
1006889TTATTATGATTTATTATAATTTATTATGAADesign primers
1006938ACTTTAAAAGAATGATTGCAAGCTAAAAGAATGATTGCAAGCTAAAAGAATGATTGCDesign primers
1017616AAAATTTTTCTAAAGTTTTTTTAAAATTATTTTDesign primers
1042020AT-AA-AA-AT-AA-AG-AT-AG-AA-AT-AA-AADesign primers
1042065AAAAATAAACCAAAATAAGCAAAATTATACDesign primers
1047364ATAAAAACAAAAATAACAAAAAAADesign primers
1058341CACCAAAGGAAAAATAGCCAAAGGCAAAATCACTAAAGCAAAAAADesign primers
1081139TTAAAAATATAAAAATTTAAAATTDesign primers
1122610AAAAACTTAAAAAATCTAAAATAAAGTTAADesign primers
1122762TAGTATAAATATTTGTGTAAATATTTATATAAATATDesign primers
1126149CCAGTGATTATATCAAGAATGATTATATCAAGAATGATTATATCADesign primers
1161684GAATTTAGAATTTTGAAATTAAAATTTADesign primers
1192752AAAAAATAAAAAAAATAAAGAAAADesign primers
1212387AAATCACTTTTGATATAATCATTCTTGATATAATCATTCTTGATADesign primers
1214685TTTATCTTTTATTATCATTTATTATCATTTDesign primers
1226175AAAATACTAAAATTCTAAAATATTDesign primers
1279409ACTTCAGCTTCAACTTTAAATTCADesign primers
1280332AATTGGAATTTGAAGTGGAACTGGDesign primers
1322077ATTATTATTAATTTTATTATTTTTDesign primers
1343905AAAATTAAAAAAATAAAAAATAAADesign primers
1344100AATTAAATTTAAAATTTGAATTTAAAATCTAAATTTAAADesign primers
1350412AAAAACTTAAAAAATCTAAAATAAAGTTAADesign primers
1350564TAGTATAAATATTTGTGTAAATATTTATATAAATATDesign primers
1388811AACTTTTTTACTTTTTAGCTTTTTDesign primers
1462257CTACAAAAGCTATAAAAGTTACAAAAGDesign primers
1475005AAACTATAAAAATATAAAGCTATADesign primers
1535277TTTGTTTTTATCTCTTTTTATTTTTTTATADesign primers
1547177TTTGTTTTTCTTTTTGATGTTGTTDesign primers
1551028ATCAATTTTTTTATATATTTTTTTATCAATAATTTTDesign primers
1630586TTTTGTTTTTTCTTGATTTGTTTTGDesign primers
1638241AATAAATAATATATAAATAAGATAAAAATAATADesign primers
1652371AAAAAATTTAAAAGAATTAAAAGAAATTTTDesign primers
1710766AT-TA-AA-AA-AT-TA-TA-AA-AT-AA-AA-AADesign primers
1773041TATAATTTAATATCATATCATAGAADesign primers
1778119ATATATTTAAATATTTATTAAAATATATCTTAAAATDesign primers
1786410CGATGCAAA-TGATGCAAA-TGATGCAAADesign primers
1800171CAGTGATTATATCAAGAATGATTCTATCAAAAATGATTATATCAADesign primers
1803108ATTTTA-ATTTTA-AATTTA-ATTTTGDesign primers

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