Microsatellites /Tandem Repeats database

Genome: Listeria monocytogenes serotype 4b str. LL195

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
99752AAACAGCTAAAGAAACAGCAAATGAAACAACAAAAGDesign primers
168408AGTACCGCCAACACCAGTACCACCAACACCAATACCGCCTACTCCDesign primers
196958CGT-CAT-CAT-CAT-CGT-CAT-CAT-CATDesign primers
357973TTGCTTGTTTTG-TTGCTTGTTTTG-TTGCTGTTTTTGDesign primers
557255AGAAAAAGCAGATAAAGCAGAAAAAACDesign primers
596148AGATCCGGATCCAGTAAATCCAGATCCAGTTGATCCAGACCCAGTDesign primers
625965TTTGTATTAGTATTGGTATTTTTADesign primers
675413GACACCAAAAGATACACCAAAAAATACACCAAAAGADesign primers
701912TTCAGGAGC-CTCAGGAGC-CTCAGGAGCDesign primers
724772TT-TT-TT-CT-TT-TT-TT-GT-AT-TT-TT-TT-GT-GT-TT-TT-CT-TT-TT-CTDesign primers
957205AGAACAAAAACAACAACAAGAAAADesign primers
989494AAAAAGAAGAAGAAAACGAAACAGDesign primers
1113453TTTTTTTATTTTTTATCTTTTTTATDesign primers
1123297ATAAAAGAAATAAAACAAATACAAGAADesign primers
1126794TGCACATGTACATGTACATGCGCADesign primers
1150421ACCCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTADesign primers
1297806CCCAACGCCAAATCCAACACCAGATCCGACGCCAAATCCAACACCAACACCAACACCAGATCCAACACCGGADesign primers
1384420TTTTTTTTATTTTTCTTTCTTTTGTDesign primers
1624217GCTGCTTCTTTTGCTGCTTCTTTCGCTGCTTTATTTDesign primers
1849461CATCCGCATCGGCATCCGCATCGGCATCGGDesign primers
1849492GTCGGCATCAGCATCGGCATCGGCATCCGCATCAGCATCCGCATCAGCGTCGGCATCTGCGTCGGCATCAGADesign primers
1849917CGTCGGCATCGGCATCGGCGTCAGDesign primers
1849942ATCCGCATCAGCATCGGCATCGGCDesign primers
1849967TCAGCATCCGCATCGGCGTCGGCATCAGCATCGGCGTCAGCATCCGCATCGGCGTCGGCATCCGCATCAGCGDesign primers
1850040CGGCAT-CAGCAT-CCGCAT-CCGCAT-CAGCAT-CAGCATDesign primers
1850077AGCGTC-GGCATC-AGCGTC-AGCGTC-AGCATC-CGCATC-GGCGTC-GGCATC-AGCATC-GGCGTC-GGCGTC-AGCATCDesign primers
1850150GCATCGGCGTCAGCATCCGCATCAGCATCAGCATCAGCATCAGCATCAGCATCAGCATCAGCATCAGCGTCCGCATCAGCGTCGDesign primers
1850237TCGGCA-TCGGCA-TCAGCA-TCAGCA-TCGGCA-TCAGCA-TCAGCA-TCAGCA-TCCGCA-TCAGCA-TCCGCA-TCCGCA-TCAGCADesign primers
1850316CAGCGTCGGCATCAGCGTCAGCATCCGCATCGGCGTCAGCATCGGCATCGGCATCGGCGTCAGCATCGGCGTCAGCATCCGCATCAGCGTDesign primers
1850429TCGGCATCCGCATCAGCATCGGCGTCAGCATCCGCADesign primers
1850468GCGTCGGCATCCGCATCAGCGTCAGCATCCGCATCCGCATCGGCGTCGGCATCAGCGTCGGCATCAGCATCAGCGTCAGCATCGGCGTCAGCGTCGGCATCCCCAACADesign primers
1996629TCAGCTTTTTCAGCAGCAGCTTTCTCGGCAGCAGCTTTCTCGGCAGCAGCTTTGTCAGCCDesign primers
2082044TTTGTTTAATGTTTCTTCAATGTTTGTAAAATGDesign primers
2362770TTGCTTTTCCTTCTGCTTTTGCTTDesign primers
2370459CTTTTTCATCCTTTTTCCCCCTTTTTTATGDesign primers
2406607ATATTTTGTTGAATC-TAATTTTGTTGAATC-TAGTTTTGTTGAATCDesign primers
2430375CTCTTTTACTATTTTACTTTTTTADesign primers
2682540TTTGCTTTTGATTTGTTTTTTATTTACTTTTAADesign primers
2709136CAACAACACCAATAACAAAAACAADesign primers

Please help us improve this resource by reporting problems, suggestions etc.