Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Burkholderia ambifaria MC40-6 chromosome 1

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
40612	GGGCTGAAAACGAGGGCCAAAAACGAGGACCGAAAACGA	Design primers
43700	ACGAGCACGATCGCGAGCACCAGC	Design primers
52764	CGACCGCGACGGCCACCGCGACCA	Design primers
143532	TGGTCA-CGACCA-CGACCA-CGACCA-CGACCA-CGACCA-CGACCA-CGACCA-CGACCA	Design primers
177206	ATCGCGGCGATCGCGGCCATTGCGGCG	Design primers
178228	CTGGCA-CCGGCA-CCGGCA-CCGGCA	Design primers
203153	GCGCGGTGAACTGCGCGTTGTACTGCGCGGTCAACT	Design primers
206351	TTTCGG-TCTCGG-TCTCGG-TCTCGG	Design primers
225151	CGTCGTGCCCTTCGTGCCCTTCGTGCC	Design primers
235310	GCCGTCGCGCGCCTGCGCGCGCGGTTGCGC	Design primers
238582	GTGGCG-GTGGCG-ATGGCG-ATGGCG	Design primers
268291	CGTCCGCCGCGTCTGCCGCGTCCGCCG	Design primers
349673	GCGCCGCACCGCGCGACGCCGCGCC	Design primers
367550	GCGCGGCACGGCGCTGGGCGCCGCG	Design primers
387353	CGCGCTCGCGCGCGCGATCGCGCT	Design primers
388994	GCCGCACCGGCAGCACCGGCCGCACCC	Design primers
475193	CGGGCGCGAGCGCGGCCGCGGCCG	Design primers
484626	GACTGAGGCCGACTGCGGTCGACTGACGCG	Design primers
500170	ACGGCCACGGCACCGGCCACGGCG	Design primers
505902	GACGGCGACGCCGGCGGCGACGGC	Design primers
510310	CGGGCCGCCGCGCCGCCGGGCCGG	Design primers
526348	GCGCTGCAGGTCGCGCTCGAGGTCGAGCTGCTGGTC	Design primers
578539	CGGCGGCGACGGCGGCCGGGGCGG	Design primers
594356	CCGGCGAAGAAGGCCGCTGCGAAGAAGGTCGCGGCCAAGAAGGTC	Design primers
594421	CAAGAAGGTCGCTGCCAAGAAAGTCGCGGTAAAGAAGGTTGCCGC	Design primers
594480	CGGCGAAGAAGGCCGCTGCGAAGAAGGTTGCAGCCAAGAAGGTCG	Design primers
594635	GCCGCTGCGAAGAAGGCTGCGCCTGCCAAGAAGGCTGCCCCTGCGAAGAAGGCT	Design primers
597757	ATGGCCGGTTGGACGACCGGTTGGACGGCCGGTTGGATGTCCGGTTCG	Design primers
614505	CGCGCGCGCGAGCGCGGGCTCGCG	Design primers
622594	GCCGCGCGCGTGCCTCCCGCGTGCCGCCCGCGC	Design primers
668231	GCCGTT-GCCATT-GCCATT-GCCATT	Design primers
682742	GCGGTGGCGCGGTCGCGCGGCGGC	Design primers
685575	ATCGGGCGATTGGGCGATTGGGCG	Design primers
685677	CGCCGATCG-CGCCGATCG-CGCCGAGCG	Design primers
696495	CGAGCGGATCGAACGGATCGAGCGGAC	Design primers
709028	ACCGTCACCGTACCCGTCACGGTC	Design primers
719389	GGCCGCCGACAAACCCGTGAAGACCGCCGACAAACCCGTGAAGACCGCCGACAAGCTCGCGAA	Design primers
757789	GGCCGGTGCGGCCGGCGCGGCGGGTGC	Design primers
761066	GCGGCGTGCTGCCCGGCGTGATGCGCGGTTTGCTGC	Design primers
777155	CGGTCGAT-CGGCCGAT-CAGCCGAT-CAGCCGAT-CAGCCGAT-CAGCCGAT	Design primers
788907	GCGGTGCTGGCCGTCGCGCTGCTCGCGGTCGTGATGCTGGCCGTG	Design primers
815034	GCCGGC-GCCGAC-GCCGAC-GCCGAC	Design primers
820579	GACGTGCCG-GACGTGCCG-GATGTGCCG-GATGTGCCG	Design primers
834900	CCCTGATCCCTCATCCCTGATTCCTGAT	Design primers
893183	GTCGGTAACTCGGCGATAACTCGCCGGTAACTC	Design primers
914850	TCCTCTTCGTCTTCCTCGTCTTCT	Design primers
939236	GGGGCGCGGGCAC-CAGGCGCGGGCAC-CAGGCGCGGGCAC-CAGGCGCGGGCAC	Design primers
945912	CCGGCGCCGGAGCCCGCGCCGACG	Design primers
980448	GGGCCGTGGGGCCCGTGGGGGCCCTGG	Design primers
999066	TCGGCGACGAACGCGTCGGCGACGAGCCCTTCGGTGACGATCACG	Design primers
1057704	TGATGTTCGTGATGTTGGTGATGTTCG	Design primers
1060831	CCGCGATCACAGCGATCATCGCGATCA	Design primers
1061740	CGCGCGCAGCGTGCGCAGCGCGGGCAG	Design primers
1082011	GCGGCGGCCGCGGCGGCGACGGCG	Design primers
1082634	CCGGCGCGGGCGCCGGAGCGGGCG	Design primers
1102500	TCGGCTTCGGTTTCCGCTGCGGCT	Design primers
1114712	GCGGCAGCCGCAGGGGCAGCGGCG	Design primers
1119141	CCGTCCCCGTCTTCGTCCCCGTCA	Design primers
1183505	ACCCGATGC-ACCCGATGC-ACCCGACGC	Design primers
1192405	CGGCGCGGTGCCGCGTGGTGCGCCGCGATG	Design primers
1194781	TCCGTGAACGTCCGTGAGCATCCGTAAGCG	Design primers
1195872	GCGCGAGCGCGCGGGCGAGGGCGA	Design primers
1219907	GGCGCGATGAAGAAGGGCACCATGAAGAAGCATGCGATGAAGAAG	Design primers
1261217	CGTCCGTTGCCATCCGTCGCCGTCCGGAGC	Design primers
1275037	CAGGCGTCGAAGCAG-CCGGCGTCGAAGCAG-CCGACGTCGCAGCAG-CCGGCGTCGAAGCAG-CCGGCGTCGAAGCAG-CCGGCGTCGAAGCAG-CAAGCGTCGAAGCAG	Design primers
1300303	CGCGGCGAAGGCGGCCCCCGCGAGGGCGGCCCCCGCGAAGGCGGC	Design primers
1303746	ATCCTGTTCTTCATCTCGTTCTTCATCCAGTTCGTC	Design primers
1351024	CGCGCCGGCGCCGGCGCCCGCACCCGCGCA	Design primers
1388130	CGCTGAATCC-CCCCGAATCC-CCCCGAATCC-CCCCGAATCC	Design primers
1394654	CGCCGCGCCACCGCGCCACCGCGC	Design primers
1400069	GACACCGCGCCACCGCGCCACCGC	Design primers
1409591	CGCGATCACGATCGCGAGCGAGAT	Design primers
1437721	GCGCGGGCGAGGGCGTGGGCGCGG	Design primers
1441557	CTCGCGTTCGCGCTGGCGCTCGCG	Design primers
1501952	GGAGCGGATGCTGCGGCAGCCGATGCTGCGGCAGCCGGTGCTGCG	Design primers
1532162	GCCGCCGACGCCGGCGCCGCAGCC	Design primers
1560317	AGCGCGACTGAGCGTCACTGAGCGCGACGC	Design primers
1601901	CCACTCGTCGTTCCGCTGGTGCTGCCGCTCGTCGAACCGCTCGTGCTGCCGCTGGTCGAGCCGCTGGTGCTG	Design primers
1664245	AGGCATCA-CGGAATCA-CGGCACCA-CGGCACCA-CGGCATCA-CGGCATCA-CGGCATCA-CGGCATCA-CGGCATCA	Design primers
1681702	TCGCGCTCGCCCGCGCGCTCGCGGTCGAGC	Design primers
1756494	CGAAGCGTCGATGCGTCGATGCGT	Design primers
1772814	GGCCGACC-GATTGATC-GGTTGATC-GGTTGATC-GGTTGATC-GGTTGATC-GGTTGATC-GATTGATC-GATTGATC	Design primers
1780330	ATCACGACTTCACGACGTCACGAC	Design primers
1782937	ATCATC-ATCGCC-ATCGCC-ATCGCC-ATCGAC-ATCGCC	Design primers
1793579	GCACGAAA-CGAAGAAA-CGAAGAAA-CGAAGAAA-CGAAGAAA-CGAAGAAA	Design primers
1799194	TCGCGGGGGCCGGCCATCCGGGGGCCGGCCAACCGGGGGCCGGCC	Design primers
1805056	CCGTGCAGC-CTGAGCGGC-CTGAGCGGC-CTGAGCGGC-CTGAGCGGC-CTGAGCGGC	Design primers
1824849	GATTCGCACGAATCCGCACGGATTCGCCCC	Design primers
1827914	GCATCA-GCATCA-GCACCG-GCATCA-GCAGCG-GCATCA	Design primers
1875541	GCGTCGAGGTTCGCGGCTTCGAGCGTCGCGCGGTCGGGGTTCGCG	Design primers
1889676	CCGGCCATCCGCGGTCATCCGCGGCGATCC	Design primers
1897499	TTCTGCATCTGCTCCTGCATCTGC	Design primers
1918218	CGCCGCCGCGGCCGCCGGCGCCGACGCTGC	Design primers
1927732	GCCGGTGCAGCCGGTGCTGCCGATGCA	Design primers
1940880	CCCGACCTCGACCGCGACCTCGAC	Design primers
1941879	TGCCGGTGCGGGTGCCGCTGGCGG	Design primers
1942889	CGCGGCACGCGCGGCACACGCCGCACG	Design primers
1946491	CGCTCGAGCTCGCGTTCGCGCGCG	Design primers
1961634	CCGCGACGACGTCGGCGACCACGTCGGCCACGACGT	Design primers
1977289	GCGCCGGGCATCCGG-GCGCCGGGCATCCGG-GCGCCGCGAACCCGG	Design primers
2069411	GTGGCGCTGGCGGCGGCGGTCGCG	Design primers
2079822	TCGTCGTCGCCGTTGTCGTCATCG	Design primers
2082252	GCG-ACG-GCA-ACG-GCG-GCG-GCG-GCG	Design primers
2088640	CAGCGCACCGGCGCCCGACGCATCGGCGCCCGACGCATCGGCGCC	Design primers
2104644	GCGGCGCTGCGCGACGCCGCGTGGC	Design primers
2125792	GCTGCCGGCGATGCCGGCGCTGCCCGC	Design primers
2152037	GACGTGACGCCCGCT-GCCGGTACGCCCGCT-GCCGGTACGCCCGCT-GCCGGTACGCCCGCT	Design primers
2168835	GCGCGGCGCGCGCCGCGAGGCGCTCGGC	Design primers
2233818	TCGGCTGCTGCTTCGTCGGCTGCTTCGGCAGTTGCT	Design primers
2250519	CAGCGCGCCGGCGCGCCAGCCCGC	Design primers
2277671	CGGCGCGGCTGCGGGAGCGGCTGCGGGAGCGGCTGC	Design primers
2278376	CGACAG-CGACAG-CGGCAG-CGTCAG	Design primers
2339092	CGCCGTCCTCGCCCTCCTCACCCTCCTCGCCCTCCTCACCCTCCTCACCCTCCTCACCCTCCTCACCCTCCTCACCCTCCTCACCCTCCTCACCCTCCTCACCCTCCTCACCCTCCTCACCCTCCTCGCCCTCCTCACCCTCCTCACCCTCCTCGCCCTCCTCACCCTCCTCACCCTCCTCGCCCTCCTCGCCCTTCT	Design primers
2453939	GCCGACGACGACGTCGACGCCGTC	Design primers
2457854	CGACCG-CGACCG-CGAACG-CGACCG	Design primers
2467957	GCGAAGGCGAGGACGAAGACGAAG	Design primers
2473335	CCG-CCG-CCT-CCG-CCG-CCG-CCC-CCG	Design primers
2483583	GCGTCGCCGTCGGCGCCGGCGCCG	Design primers
2490469	GGCCGCCGCGTTCACCGCCGCGTTCGCCGCCGCGCT	Design primers
2491781	GCCGC-GGCGC-GCCGC-GCGGC-GCCGC	Design primers
2495947	GGCGCC-GGCGCC-GGTGCC-GGCGGC	Design primers
2496459	TGCTGTTGATGCGGTTGATGCTATTGA	Design primers
2497850	CTGCCGCTGCTGCTGACGTTGCCG	Design primers
2508658	CC-CC-GC-CC-CC-CA-GC-CC-CC-CC-GC-CC	Design primers
2531815	AGCGCGCCACC-CGCGCGCCACC-CGCGCGGCACC-TGCGCGGCACC	Design primers
2560865	GGGGCGGCGGCGGTGGCGGGCGCG	Design primers
2588512	CGCGCGCGAGCGCGTGCGCGCACG	Design primers
2589364	TGAAGACGGTGAAGACGCTGGAGACGG	Design primers
2606591	GTGCCCGTACCCGTACCCGTGCCTGCGCCC	Design primers
2606627	GC-GC-CC-GT-GC-CC-GC-GC-CG-GC-GC-CC-TC-GC-CC	Design primers
2606823	ACGCGCTCGTCGCGCTCGACACGCTCG	Design primers
2656005	ACGCGACGCTGCGCGACACGCCGCG	Design primers
2678843	CGGTTTGCGGACGG-CCGGTTGCGGACGG-CCGGTTGCGGACGG-CCGGTTGCGGACGG	Design primers
2723652	TGGGACTTCTGGTGGCGGCACTTCGGGTGGTGGTACTTCTGGTAGTGGCACTTCTGGCGGCGGCACTTCTGGTGGCGGCACTTCTAGTGGCGGTACTTCGGGTGG	Design primers
2723758	GGTACTTCGGGCGGT-GGCACTTCCGGCGGC-GGCACTTCGGGTGGT-GGCACTTCGGGTGGC-GGCACTTCGGGTGGC-GGCACTTCGGGTGGC-GGCACTTCGGGTGGC-GGTACCTCGGGTGGC-GGTACCTCGGGTGGC	Design primers
2724000	AGGTAACGGTGGCGGCAACGGCGG-CGGTCACGGCGGCGGCAACGGCGG-CGGTCACGGCGGCGGCAGCGGCGG-CGGCAACGGCGGCGGTAACGGCGG-CGGTCACGGTGGCGGCAACGGCGG-CGGCAACGGCGGCGGCAACGGCGG-CGGCAACGGCGGCGGCAACGGCGG	Design primers
2724169	GGCAACGGCGGCGGCAGCGGTGGCGGCAACGGCGGCGGCAGCGGTGGCGGCAGCGGTGGCGGCAACGGTGGCGGTCACGGCGGCGGCAACGGTGGCGGTCACGGCGGCGGCAACGGCGGCGGCAGCAGCGGC	Design primers
2729464	CCGGTGCCGGTACGCCCGAGCCGGTACGCCCGAGCCGGTACG	Design primers
2751737	GGTCACGGACGGCC-GGTCACGGACGGCC-GGTCCCGGACGGGC-GGTCCCGGACGGCC-GGTCACGGACGGGC	Design primers
2757509	ACACGCCGG-CCACGCCGG-CCACGCCGG	Design primers
2796102	AGCACGATCACGAACACGAGGACG	Design primers
2802501	TGCGACGGGCAATCC-GGCGACGGGCACACC-GGCGACGGGCAATCC-GGCGACGGGCAATCC-GGCGACGGGCAATCC	Design primers
2809789	GCAGCACCCGACGCACCAGCGCCCGACACAGCGGCGCCCGACGCG	Design primers
2819659	CCGCGCCCGCGTCTGCGCCCGCGT	Design primers
2957151	CGGTGAATCGTTGAATCGGTCAAT	Design primers
2963493	GTTCGGCGTCGTCAGGCGTCGTCAGGCGTCGTCAGGCGTCGTCAGGCGTCGTTCGGCGCC	Design primers
2992053	CGC-CAC-CGG-CAC-GGC-CAC-CGC-CGC-CGC-CGC	Design primers
3003173	CGAGCGCGACCGCGAGCACGAGCG	Design primers
3012866	GGTCGCGT-CTGAGCGT-CTGAGCGT-CTGAGCGT-CTGAGCGT-CTGAGCGT-CTGAGCGT-CTGAGCGT-CTGAGCGT-CTGAGCGT-CTGAGCGT-CTGAGCGT	Design primers
3038316	CGGTCGAG-CGGCTGAC-CGGCTGAC-CGGCTGAC-CGGCTGAC-CGGCTGAC	Design primers
3065224	CGCCGCCGCCGATGCCGCCGCCGA	Design primers
3139980	CGCAGCAACAGCAGCAACAGCAGCAAC	Design primers
3239413	ATGGCTGCC-GTTGCTGCC-GTTGCTGCC-GTTGCTGCC-GTTGCTGCC-GTCGCTGCC-GTTGCTGCC-GTCGCTGCC-GTCGCTGCC-GTCGCTGCC	Design primers
3256911	TGGCGTCGGGTG-CGGCGTCGGGTG-CGGCGTCGGGCG	Design primers
3258918	GGCGCTGATGCGCTGAAGCGCTGA	Design primers
3269114	CGCCG-CGCCG-CGCGG-CGCCG-CGCCT	Design primers
3298512	TCC-GCC-GCC-GCC-CCC-GCC-GCC-GCC	Design primers
3317152	CGCGCTGCTCGCGCTGCGCGCGCCGCT	Design primers
3345007	GGCTCTTCGCTCGGCGGC-GGCGTTTCGCTCGGCGGC-GGCGTCTCGCTCGGCGGC-GGCGTCTCGCTCGGCGGC-GGCGTCTCGCTCGGCGGC-GGCGTCTCGCTCGGCGGC-GGCGTCTCGCTCGGCGGC-GGCGTCTCGCTCGGCGGC-GGCGTCTCGCTCGGCGGC-GGCGTTTCGCTCGGCGGC-GGCGTCTCGCTCGGCGGC-GGCGTTTCGCTCGGCGGC-GGCGTCTCGCTCGGCGGC-GGCGTTTCGCTCGGCGGC-GGCGTTTCGCTCGGCGGC	Design primers
3345278	GCGTCTCGCTTGGCGGCG-GCGTTTCGCTTGGCGGCG-GCGTCTCGCTCGGCGGCG-GCGTCTCGCTTGGCGGCG-GCGTCTCGCTTGGCGGCG-GCGTCTCGCTCGGCGGCG-GCGTTTCGCTCGGCGGCG-GCGTCTCGCTTGGCGGCG-GCGTCTCGCTTGGCGGCG-GCGTCTCGCTTGGCGGCG-GCGTCTCGCTTGGCGGCG-GCGTCTCGCTCGGCGGCG-GCGTCTCGCTTGGCGGCG-GCGTTTCGCTCGGCGGCG-GCGTTTCGCTCGGCGGCG-GCGTTTCGCTTGGCGGCG-GCGTTTCGCTTGGCGGCG-GCGTCTCGCTCGGCGGCG-GCGTTTCGCTTGGCGGCG-GCGTCTCGCTTGGCGGCG-GCGTTTCGCTCGGCGGCG-GCGTCTCGCTTGGCGGCG-GCATTTCGCTCGGCGGCG-GCATTTCGCTCGGCGGCG-GCATTTCGCTCGGCGGCG-GCATTTCGCTCGGCGGCG-GCATTTCGCTCGGCGGCG-GCATTTCGCTCGGCGGCG-GCGTCTCGCTCGGCGGCG-GCATTTCGCTCGGCGGCG-GCATTTCGCTCGGCGGCG-GCATTTCGCTCGGCGGCG-GCATTTCGCTCGGCGGCG-GCATTTCGCTCGGCGGCG-GCATCTCGCTCGGCGGCG-GCATCTCGCTCGGCGGCG-GCATCTCGCTTGGCGGCG	Design primers
3345985	GTC-GGC-GGC-GGC-GGC-GGC-GGC-GGC	Design primers
3371664	CAACCGCCCCAGCCGCCCCAGCCGCCC	Design primers
3396088	CGCGGCCGCGGACGCGACCGCCGC	Design primers
3408973	CCCCCGCCCGCAAGACCGCCACCCGCAAGACCACGGCGCGCAAGA	Design primers
3432640	CGCGCAGCGCTGCGCCGCGCTGCGC	Design primers
3436880	CTCGTGATCGTGCTCGCGCTCGGG	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

40612

GGGCTGAAAACGAGGGCCAAAAACGAGGACCGAAAACGA