Microsatellites /Tandem Repeats database

Genome: Xanthomonas oryzae pv. oryzae MAFF 311018

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
11387CCCCCGCCGCCGCCGCCGCCGCCGCCCCCGDesign primers
149411CCGATG-TCGATG-TCGATG-TCGATGDesign primers
160788TGGGGGG-ATTCGGG-ATTCGGG-ATTCGGG-ATTCGGG-ATTCGGG-ATTCGGG-ATTCGGG-ATTCGGG-ATTCGGG-ATTCGGG-ATTCGGGDesign primers
182792CCTCCAGCTCCACCTCCAGCTCCADesign primers
273241GATGGCGATGACAATGGCGACGGCDesign primers
324477TCGTGAC-GCACAAC-GCACAAC-GCACAAC-GCACAAC-GCACAAC-GCACAAC-GCACAAC-GCACAAC-GCACAAC-GCACAAC-GCACAAC-GCACAAC-GCACAAC-GCACAACDesign primers
367827GATGGCGATGACAATGGCGACGGCDesign primers
375243GATGAC-CATGAC-CATGAC-CATGACDesign primers
375303CGTGCCCGTGGCCGTGTCCATGCCDesign primers
424479TGGCCGTGGGCGTGGCAGTGGCCGDesign primers
425796GCCACCGCCGGCACCGCCGCCAGCGCCDesign primers
561043CCGCGC-CCGCGC-CCGCAC-CTGCGCDesign primers
566321TGGGATTGGGGATTCGGGATTGGGGATTDesign primers
568074GCGCCGGTGCCGGTGCCGGTGCCGGCGCGGDesign primers
569053GCACCAGCGCCAGCACCAGCATCADesign primers
581447ACGCG-CCGTG-CCGTG-CCGTG-CCGTG-CCGTGDesign primers
613329GGGGATTGGGGATGGGTGATTCGGGATTDesign primers
645751CGCCACGCCGCGGCAAGCCACGCCTDesign primers
664558CCTGCCT-GCTGCCT-GCTGCCT-GCTGCCTDesign primers
698120CGGCCAGCCACAAGCCCAGCCACAAGCCCAGCCACADesign primers
703450TGCTGG-TGCTGG-TGCAGG-TGCTGCDesign primers
718622AATCCCG-AATCCCG-ATTCCCG-AATCCCADesign primers
798054CAGCAGCGGCGCCGCAACGGCGCAGCCGCGTCGDesign primers
817029AATCCCCAATCCCAACTCCCCAATCCCCDesign primers
825551CTTCCGCCCTTTCGCCGTTCCGCCDesign primers
827353TC-TC-CC-CG-CT-CC-CC-AC-TC-CC-CA-CT-CC-CCDesign primers
849963TCGATTC-CCGATTC-CCGATTC-CCGATTC-CCGATTCDesign primers
888233TCGATTC-CCGATTC-CCGATTC-CCGATTCDesign primers
958666CGCCGTGG-CACCGTGG-CACCGTGG-CACCGTGGDesign primers
958981AGTCGCCGACAT-TGTCGCCGACAT-TGTCGCCGACGTDesign primers
995877GAGATCGCAA-GAGATCGCAA-GAGATCGAGADesign primers
1024898TAATCGT-CAATCGT-CAATCGT-CAATCGTDesign primers
1167236GGAATAG-GGAATCG-GGAATCG-GGAATCGDesign primers
1220025CGCCGCGCGCCGCATGCCGCGCGCCGCADesign primers
1223178CTTGGC-ATTGGC-ATTGGC-ATTGGCDesign primers
1258344CAGCTGCCCGCCCAGCTACACGCCCAGCTACACGCCDesign primers
1315974TCGATA-CCGATA-CCGATA-CCGATADesign primers
1322672CGGGGAT-TTGGCAT-TCGGGAT-TCGGGAT-TCGGGAT-TCGGGAT-TCGGGAT-TCGGGAT-TCGGGATDesign primers
1322736CGGGGAT-CGGGGAT-CGGGGAC-CGGGGACDesign primers
1345359CCGATCGAACAGATCGAACGGATCGAADesign primers
1378339CGGGATTCGGGAGTGGGGATTGGGGATTDesign primers
1409404GTTTAAT-CGGGAAT-CGGGAAT-CGGGAAT-CGGGAAT-CGGGAAT-CGGGAAT-CGGGAAT-CGGGAAT-CGGGAAT-CGGGAAT-CGGGAATDesign primers
1429718AGCACA-CGCACA-CGCACA-CGCACADesign primers
1432642CGATTCC-CGATTCC-TGATTCC-CGATTCCDesign primers
1486032GCACCCGCCGCGCCCGCCGCGCCCGCCDesign primers
1510448CCATGACCG-GCATGACCG-GCATGACCGDesign primers
1514565CCATGACCG-GCATGACCG-GCATGACCGDesign primers
1549085GCCAT-GGCCA-GGGCA-GGGCA-GGGCA-GGGCA-GGGCA-GGGCA-GGGCA-GGGCA-GGGCA-GGGCA-GGGCA-GGGCA-GGGCADesign primers
1567501ACTGCCG-ATTGCCG-ATTGCCG-ATTGCCGDesign primers
1625234CTGTGGCGGTTTGCGGCGGTTTGCGGCGGTDesign primers
1680061CTTTTAC-GATTCCC-GATTCCC-GATTCCC-GATTCCC-GATTCCC-GATTCCC-GATTCCC-GATTCCC-GATTCCC-GATTCCC-GATTCCCDesign primers
1701165AATCCCGAATGCCGAATCCCGAATCCCGDesign primers
1705131CCGCATC-CCGCATC-CCACATC-CCGCATCDesign primers
1783446TGCCTGC-CGAATCC-CGAATCC-CGAATCC-CGAATCC-CGAATCC-CGAATCC-CGAATCC-CGAATCCDesign primers
1833082CATCGGCATC-GTTCGGCATC-GTTCGGCATCDesign primers
1868661GCCGCCAAGAAGGCCGTCAAGAAGGTCGCCAAAAAGDesign primers
1868857CCGCCAAGAAGGCAGTGAAGAAGACCGCCAAGAAAGCCGTCAAGAAGACCGCCAAAAAGGCAGTAGCGAAGADesign primers
1935199GTGGTGGTGGTGGCGGTGGTGGGGDesign primers
2001151TGCAGTGCAATGAAGGGCAGTGCACDesign primers
2006437GGGATTGGAGATTGGGGATTGGGGATTCDesign primers
2040303CGCCGCCGCCCCCACCGCCGCCACDesign primers
2044446CGGGATTCGGCATTCGGGATTGGGGATTDesign primers
2093159CCTGGTTGGCCTTGGTTGGCCTTGGTGGGCDesign primers
2103675CGCGCTGCTTGTCGCGCTGCCAGTCGCGCTCCTTGGDesign primers
2112583ATATCTTCGGCGATATCTTCGGCAATATTTTTGGCGDesign primers
2143369CTGCCG-CTGCGG-CTGCGG-CTGCGG-CTGCGGDesign primers
2157033GAATGGGGAATGGAGAATCGGGAATGGTDesign primers
2160414CGGGATTGGGGATTCGGAATTTGGGATTDesign primers
2212320TGCGCCAC-CGCGCCAC-CGCGCCACDesign primers
2360581CATCTC-GATCTC-GATCTC-GATCTC-GATCTCDesign primers
2501512TGCAGGCGATGCAAGCGATGCAAGCGADesign primers
2583619ATCTAC-ATCGAC-ATCGAC-ATCGACDesign primers
2597329GTGCTGTTCATCGTGACGTTCATCGTGCTGGCCATCDesign primers
2600179ACG-ACG-ACC-ACG-ACC-ACG-ACC-ACGDesign primers
2616052TTACCAA-TCCCCAA-TCCCCAA-TCCCCAA-TCCCCAA-TCCCCAADesign primers
2619232CTCGGGGAACTGGGGGAACTGGGGGAADesign primers
2622113GCCCTG-TCCCTG-CCCCTG-CCCCTGDesign primers
2622138ACGCGGT-AAGCGGT-AAGCGGT-AAGCGGT-AAGCGGTDesign primers
2743654AGGCTGTG-CGGCTGTG-CGGCTGTG-CGGCTGTGDesign primers
2748542TGGTGTTGCTGTTGGCGTTGCTGTDesign primers
2752089CGATCG-CCATCG-CCATCG-CCATCGDesign primers
2763796TTCGGGA-TTGGGGA-ATCGGGA-ATCGGGA-ATCGGGADesign primers
2815047CGAATCACGAATCCCCAATCACGAATCCDesign primers
2815615AGCGCCAGCGCATGCGCCAGCTCCDesign primers
2822860GCTTGGTCGCCG-GCTTGGTCGCCG-GCTTGGCGGCCGDesign primers
2938622TGCGGTCCAGCCGGCCGGGATCCAGCCGGCCGGGGTCCAGCCGGCCGGGGTCCAGCCGGCDesign primers
3054883CCATGCAGC-GCATGCAGC-GCATGCAGCDesign primers
3158717GCACGGCGGTAGGCGGTAGGCGGTAGGCGGTAGGCGGTAGGCGGATGGCGGTAGGCGGATGGCDesign primers
3158781GATGGCG-GATGGCG-GATGGCG-GATGGCGDesign primers
3158831ATGGCGG-ATGGCGG-ATGGCGG-ATGGCGG-ATGGCGG-ATGGCGG-ATGGCGG-ATGGCGADesign primers
3245657GATGGCGATGACAATGGCGACGGCDesign primers
3270566GTGGGTGTGGGCGTCGGTGCGGGTDesign primers
3302359GGCGTC-GGTGTC-GGTGTC-GGTGTCDesign primers
3312100GAGGCA-GTGGCA-GTGGCA-GTGGCA-GTGGCADesign primers
3496279TCGTCAT-TCGGGAT-TCGGGAT-TCGGGAT-TCGGGAT-TCGGGATDesign primers
3515491TGGGATT-GGGGAGT-TGGGAGT-TGGGAGT-TGGGAGT-TGGGAGTDesign primers
3524318GTCCATCCGTGCATCCGTGCATCCDesign primers
3542679CGAATCCCAAATCCCGATTCCCGAATCCDesign primers
3560830GGCATCG-GGAATCG-GGAATCG-GGAATCGDesign primers
3564615GGCGCT-GGCCCT-GGCCCT-TGCGCTDesign primers
3592470CGGCC-GGGCC-GGGCC-GGGCC-GGGCCDesign primers
3618868CGCCACCGCCGCCGCCAGCGCCACCGCCAGDesign primers
3623726CGAATCCCGAATGCCGACTCCCGAATCADesign primers
3633541CACCAGCATCAGCACCACCGCCAGDesign primers
3650759TGTGTAGGTTGCGGTTGCGCTGGTTGCGGTTGCGCTGGTTGCGGTDesign primers
3757924ACCGTCACCGCCACCGACACCGACDesign primers
3889676TCACCG-CCACCG-CCACCG-CCACCGDesign primers
3890783GCCGAC-CCCGAC-CCCGAC-CCCGACDesign primers
3973007CTGCGTGTT-GTGCGTGTT-GTGCGTGTTDesign primers
3973090AGCA-AGCG-AGCG-AGCG-AGCG-AGCGDesign primers
3995313CAGGCCACCGGGCCACCACGCCACDesign primers
4074283AGCCGGG-AGTCGGG-AGTCGGG-AGTCGGGDesign primers
4075187AATCCCGAATGCCGAATCCCCAATCCCGDesign primers
4086656GGGATTGGGGATCGGGGATTGGGGATTCDesign primers
4086699CCAATCCCGAATCCCCAATCCCCAATTCDesign primers
4098440CATTCGGGCAATCGGGCAATCGGGDesign primers
4117896GTTGGAATTGGTGGTGTTGGAGGTCGTGGTGTTGGAGGTCGTGGTDesign primers
4119065CTCGCGGCGGTC-GTCACGGCGGTC-GTCACGGCGGTC-GTCACGGCGGTCDesign primers
4166733AATGTC-GATGTC-GATGTC-GATGTCDesign primers
4258978CTGCAG-TTGCAG-TTGCAG-TTGCAGDesign primers
4285543CCAAAC-CGACAC-CGACAC-CGACAC-CGACAC-CGACAC-CGACAC-CGACACDesign primers
4285592AACGCC-AACCCC-AACGCC-AACGCC-AACGCC-AACGCCDesign primers
4335083TCCCATCTGTTTCTCTTCTGTTTCTCTTCTGTTDesign primers
4345940GCTGCAGCCGCAGCGGCAGCGGCADesign primers
4356792TCACGC-TGAGCC-TGAGCC-TGAGCC-TGAGCC-TGAGCC-TGAGCC-TGAGCC-TGAGCCDesign primers
4356859GC-GC-GG-GC-GG-GC-GG-GC-GG-GC-GG-GCDesign primers
4362840CCAATCTCCAATCCCCAACCTCCAATCCCCAACCTDesign primers
4406765TGTCGCGC-GGTCGCGC-GGTCGCGCDesign primers
4415677TGGGATT-GGGGATT-GGGGATT-GGGGATTDesign primers
4430151CGGCGAC-TGGCGAC-TGGCGAC-TGGCGACDesign primers
4536533GCGGCC-GGTGCC-GGTGCC-GGTGCC-GGTGCC-GGTGCCDesign primers
4561568CCATGCCGC-CCATGCCGC-CCATGCCACDesign primers
4580321CCCACGCCGCCGCCCGCCGCCCCCCCCCGCDesign primers
4622784GCGTCG-GCGCCG-GCGCCG-GCGACGDesign primers
4642294CTGATTTGAGCCGATTTGAGCTGATTTTTGDesign primers
4741363TCTGCATCTGCTGCTGCATCTGCGDesign primers
4742682GATGGCGATGACAATGGCGACGGCDesign primers
4743292AAAATCAGCT-CAAATCAGCT-CAAATCGGCTDesign primers
4790131TGGGTAT-CGGGTAT-CGGGTAT-CGGGTAT-CGGGTATDesign primers
4841466GGCCAACCAGGTCAACCAGGTCAACCADesign primers
4894252GCGCTGCGGCGCTGCAGCGGTGCGDesign primers

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