Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Comamonadaceae bacterium CR

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
27919	CGACTGAGCGACAGAGCGACTGAG	Design primers
36244	ACTAACGATAGAGCTAACGATAAAACTAACGAGAAA	Design primers
70633	CAGCGGGCCAAAG-TAGCGGGACAAAG-CTGCGGGACAAAG-CTGCGGGACAAAG	Design primers
88417	AAAGGGGGAAAGGGAGCAAGGGGG	Design primers
96966	AGAAGGCGAATCAGGAGGCGAATCAGCAGACGAATC	Design primers
135135	CGGCATCGGCACCCTCATCGGCACCCTCATCGGCAC	Design primers
220393	TGCCGTTGCCGGGGCCGTTGCAGT	Design primers
220906	TGGCCTATTCGTCCCCTATTCGTCACCTATTCG	Design primers
243432	CACTAACAATGGGTTCCAAAAGCCTATGAATGGGTTCCAAAAGCCTATGAATGGGTTCCAAAA	Design primers
271140	TCTATC-ACTATC-ACTATC-ACTATC	Design primers
301091	GAAGGTGCTGAAAGTGCTGAAGGTGCT	Design primers
311269	TGGATTGGGAAATGGACTGGGAAGTGGACTGGGGAA	Design primers
318571	AGGGGTTATAGGGGCTATAGGGGTTAT	Design primers
319763	TTTCCACAAGGCCTTTCCACAAGGTTTTTCGTCAAGGCC	Design primers
335215	CGCAACACCTAGCGCAACAACCAGCGCAACATCTTG	Design primers
350838	CTTCGGCGTAATTCGGCGCAATTCGGCGTA	Design primers
380227	GTGTGCGCTGTG-GTGTGTGATGTG-GTGTGTGATGTG-GTGTGTGATGTG	Design primers
399907	GGATTTATGGGTTTATGGATTTTT	Design primers
525104	CAAGGGATGCAACAAGGAATGCAGCAAGGCTTGCAA	Design primers
556655	TGCCTCGCTCCATGCCTTGCTCTATGCCTTGCTCTA	Design primers
581560	AGACAACTAG-GCACAACTAG-GCACAACTAG-ACACAACTAG	Design primers
583703	GGTCAAGGCAGCGTCAAGGGAGCGTCAGGGCAG	Design primers
612058	CTTAGGACTGAGGACTCAGGACTTGGGA	Design primers
613377	TGTTTGGGATGTTTGGAATGTTTTGGA	Design primers
627297	TGACGATGACCATGACCATGACGT	Design primers
652955	CGGTAG-CGGTAG-CGGTGG-CGGCAG	Design primers
680879	TTGGTTCCCGGTGCA-ATGGTTCCCGGTGCA-ATGGTTCCCTGCGCA	Design primers
690740	ATCTCGCTATCTTGCTATCTCGCT	Design primers
706076	GTGATCATGGTCGTGAGAGTGGTCATGGTCCTCAGAATGATCATGGTCGTGATG	Design primers
839380	GGAAGCTGTAG-GGAAGCTGTAG-GGAAGATCTAG	Design primers
873019	CCAAGCCTTCCAAGCCCTCCAAGCCAT	Design primers
880806	ATCAGGCGATA-AATAGGCGATA-AATAGGCGATA-AATAGGCGATA	Design primers
907070	TCGGCAGCATCGGCTGCATCGGCAGTA	Design primers
920295	CTCTCTTTCCCCTCTTTCCCCTCTTTC	Design primers
925587	CTATTGGCTGCTATTTGCCGCTATTTGCTGCTATGGGCTG	Design primers
965863	CAATACACTGCACTACCCTGCAATATATTG	Design primers
965929	CACCCCAGTGACAGTCCAGTGACACCCCAGTGA	Design primers
1051643	CATCGCACCAGCAGCCATCACACTAGCAGCCATCGCATCGACAGC	Design primers
1051924	CAGGGG-CAGGAG-CAGGAG-CAGGAG-CAGGAG	Design primers
1063616	TACGCCGCCTGATACGCCCCCAGATACGCATCCTGA	Design primers
1071667	GCTGATAAC-ACTGATAAC-ACTGATAAC	Design primers
1083829	CAAGAAGGAAAA-TTAGAAGGAAAA-GCAGAAGGAAAA-GCAGAAGGAAAA	Design primers
1085769	GCAGATGTGAATGGCTGATGTGGATGGCAGATGTGAATG	Design primers
1134353	TCCTGCTTCGGATCCTGCGTGGGATCCTGCTTCGGC	Design primers
1167697	GCTGCTGCC-TCTGCTGCC-TCTGCTGCC	Design primers
1169068	GCC-ACC-GCC-GCC-GCC-ACC-ACC-ACC	Design primers
1206013	TCCTTCGAAGACTGCTGCGAAGACTACTCCGAAGAC	Design primers
1218588	GCTTCCTCGCTGCCTCGCTTCCTT	Design primers
1244615	CACCTCCATCACCTCGATCACCTCCAC	Design primers
1273116	TTGGCTGCGGGCTTGGCTGCTGCCTTCGCTGCGGGT	Design primers
1336805	TGCCGTAGGGGCTGTAGTAGGGGCTGCCGTAGGGGC	Design primers
1375684	ATGCGAATGAC-ATGCGAATGAC-GTGCAAATGAC	Design primers
1386404	GGAACGACGGGGACGACGGGGACGACG	Design primers
1391766	GATGGATCACTGTGGATCACGATTGATGAC	Design primers
1400815	ACACCGATGCCCCCTGCACCAATTCCCCCTGCGTCGATGCCCCCT	Design primers
1418548	GCGCTGGCTCGCGCTGCATCGCGCTGCCAC	Design primers
1464827	AGCCCTTGTTGTATACCTTGTTGTATACCTTGTTGT	Design primers
1530237	TGTCGTCGCACATGTCTTCGCACTTGTCCTGGCACA	Design primers
1548810	ACCCCCTTTCACCCCCTCACACCGCCTTAC	Design primers
1560672	GATGACCGCTGACGGCCGCTGATGGCCGTTGATGGCCGGT	Design primers
1612399	CTCGACATCGACCTCGACATCGAC	Design primers
1637242	CACCGTCACCATCGCCGTCACTGTCACCGC	Design primers
1639782	TCGCCGTCACCGTCACCGTCGTCG	Design primers
1653841	CAGGAGCAGGGGCCGGAGCAGGCG	Design primers
1670553	GTGGCCGGGCAA-GTGACCGGGCAA-GTAACCGGGCAA-GTAACCGGGCAA-GTAACCGGGCAA	Design primers
1673282	GGGAAGTCACCC-CCGAAGTCACCC-CCGAAGTCACCC	Design primers
1686717	TTCCCGTATTCCCCGTATTCCCCGTAT	Design primers
1704095	TGATATTC-TTGGGTTC-TTGGGTTC-TTGGGTTC-TTGGGTTC-TTGGGTTC-TTGGGTTC-TTGGGTTC-TTGGGTTC	Design primers
1724067	ACAAGAATTCACAAAAACTCACAAAAACTC	Design primers
1742212	GCAAACGGCCATGAAGACGGCCATGGAAACGGCTAT	Design primers
1789237	GGGAATAGGGAGAAATAGGGAGGAATATGG	Design primers
1791264	CCACAACCATAACCACAACCACCA	Design primers
1847979	GCAGGGTCATTGCAGGATCATTGCCGTGTCATT	Design primers
1894293	AGCCTTTGACTTAGGCTTTGACTTAGCTTTTGACCT	Design primers
1931819	CGCCATGCGCGAGCAGGTTGCTATGCGCGAGCAAGTCGCCATACACGAGCAAGT	Design primers
1985751	AAGAAATGCTCGGAGCAATGCTCGGAAAAATGCTCG	Design primers
1994384	TCCCTGTCAGTCCCAGTCAGTCCCAGTAAG	Design primers
2008035	CACCGTCATCGTCAACGTCAACGT	Design primers
2127513	CCTACTTTTTCATCTCTATTTTTTCATCCCTACTTTCTAATCCCTGCTTCTTCATC	Design primers
2140415	GATTCAGCATTGACTCAGCATTGATTCGGAATT	Design primers
2147781	AAAAATGGGCAGTCTCAAAATGGTCAGTCTCATAATGCGCAGTCT	Design primers
2165725	GGCAAAACCGGCAAAACAGGAAAAACC	Design primers
2188440	ATTTCATG-TATTTATG-TATTTATG-TATTTATG-TATTTATG-TATTTATG	Design primers
2202573	GGGCCGGGAAGATGGCGGGGAAGAAGGCCGGGCAGA	Design primers
2258467	CGCCCATGCGCCGCCTATCCGCCGCCCATGCGCCGCGTATGCGC	Design primers
2264337	GTGCGCTACAGCACGCTACAGCGCGCTACA	Design primers
2269696	AGGGGGTGAGGGAAAAGGGTGAGGGAAAGGTGTGAGGGA	Design primers
2302956	AGCTACTGACAGCTTCCGACAGCTACCGAT	Design primers
2314967	GGTGGC-AGTGGC-AGTGGC-AGTGGC	Design primers
2355965	TCCCCATCCTCGCCATCCTCCCCATCC	Design primers
2403764	TTTGGGGC-ATTGGGGC-ATTGGGGC	Design primers
2408064	CGCAAGCCACCACGCAAGCGACCACGCAAGTTACCA	Design primers
2447957	CGACCGCACCATAGACCGCACCATCCATCGCACCAT	Design primers
2527775	CCCCTCTCCCCCTCTCCCCCTATC	Design primers
2538973	TGGCGG-TGGCGG-TGGTGG-TGGCGG	Design primers
2567715	GCGGCTGCTGGGGCTGCTGGGGCTGCT	Design primers
2576112	GACGTGCAT-GACGTGCAT-GACGTGCCT	Design primers
2638644	GGCGGCGGCAGCGGGGGCAGCGGC	Design primers
2660760	CCTGCCTCTGCCCCTACCCCTGCC	Design primers
2706952	GACATGTCGACATCTCGACATTTCGACATCTC	Design primers
2709241	GGGGCTGGGCGCGGCGGGGGGGCGC	Design primers
2731521	GAGAAGGGAATCGCGCAGGGAATCGAGAAAGGCATC	Design primers
2761911	CGGTGGCGACATCGGCTGCGACATCGGTTGCAACAT	Design primers
2805479	CAAAAGGAACGTGGAACAAGGAACGTGGAACAAGGAACGTGG	Design primers
2828825	AGGCAGGGTACGAATGGCAGCGTACGAATGGCGGGGTACGAA	Design primers
2831271	CCGAAT-ACGAAT-ACGAAT-ACGAAT	Design primers
2872867	CCTTGGAATAACTGGGAATAACTGGGAATA	Design primers
2889148	GAGCAATG-GAGCAATG-GCGCAATG	Design primers
2889176	ATTGGTGCATTGATGCATTGGTGA	Design primers
2895760	TTTGCGATTCGTGCCTGCGATTCGTGCTTGCGATTCGTG	Design primers
2910067	ATGGCAG-ACGGCAG-ACGGCAG-ACGGCAG	Design primers
2914318	AGATTCCATTCGAGATACCGTTCGAGACTCCATCCG	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

27919

CGACTGAGCGACAGAGCGACTGAG