Microsatellites /Tandem Repeats database

Genome: Bacillus sp. 1NLA3E

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
152997ATCGTTGTGGAGGCTTTCGTTGCGGGGGCTTTCGTTGTGGTGGTTDesign primers
153054GTTTTAGCTGTTTTAGTTGTTTTAGCTGTTTTAGCTDesign primers
163161TCATGA-TCAGGA-GCATGA-ACATGA-ACATGADesign primers
421387GACCACGGGCATAGTCATGATCAC-GACCACGGGCATAGTCATGATCAC-GATCACGGGCATCACCATGATCACDesign primers
423255TGTTTTTACTGATATATCCTAGAATTTACTGATATATTCTTTTTTTTACTGATATATTCCDesign primers
561378ATAATATTATAATGTTATAATGTTDesign primers
648348CACTATCATTATCACGATCAATATDesign primers
826970CATGGA-CATAGT-CATAGT-CATAGT-CATAGT-CATAGT-CATAGT-CATAGTDesign primers
877412TCATAACTTCTACATAACTTCCTCATAAAATCTDesign primers
903257AAGATGAATGTGAACGTGAATGTGAACGTGAATGTGDesign primers
926718TATATG-GATATG-GATATG-GATATGDesign primers
983978TAATTATAATAAAAATTATAATTTDesign primers
1019731TTTTCGCGGATTGGAGCCCGAATTTCGCGGATTGGCGGCTGATTTTGGCGGATAGGACCACGADesign primers
1111113TAGTGCGGCTTTGGTTTG-TGTGGCGGCTTTGGTTTG-TGTGGCGGCTTTGGTTTG-TGTGGCGGCTTTGGTTTG-TGTGGCGGCTTTGGTTTG-TGTGGCGGCTTTGGTTTG-TGTGGCGGCTTTGGTTTG-TGCGGCGGCTTTGGTTTGDesign primers
1111298TGTTGTCGTTGGTGCCGCTGTTGTCGTCGGTGCTGCCGTTGTCGTCGGTGCGGCDesign primers
1111353GTTGTTGTCGGTGCAGCGGTTGTTGTCGGTGCTGCGGTTGTTGTCGGTGCTGCCGTTGTCGTCGGTGCCGCTGTTGTCGTCGGTGCCGCTDesign primers
1111530GCCGTTGTAGTTGGTGCGGCTGTTGTTGTCGGTGCGGCCGTTGTTGTCGGTGCCDesign primers
1111585CTGTTGTCGTCGGTGCCGCTGTTGTTGTTGGTGCTGCTGTTGTTGTCGGCGCTGDesign primers
1111640CGTTGTAGTTGGTGCGGCTGTTGTTGTCGGTGCGGCCGTTGTTGTCGGTGCCGCTGTTGTTGTTGGTGCTGCDesign primers
1111737GTTGGTGCCGCTGTTGTTGTCGGTGCGGCCGTTGTTGTCGGTGCCGCTGTTGTAGTTGGTGCCGCTGTTGTTGTCGGTGCTGCTGTCGTTDesign primers
1111875GTTGTTGTCGGTGCCGCTGTTGTAGTTGGAGCCGCTGTTGTTGTTGGTGCGGCCGTTGTTGTCGGTGCCGCTDesign primers
1111992GGTGCCGCTGTTGTTGTCGGTACGGCTGTTGTCGTCGGTGCGACTGTTGTCGTCGGTGCGACTGTTGTCGTCGGCGCTGCCGTTGTTGTCGGTGCGGCTGTTGTCGTTGGTGCGACTGTTGTCGTCGGCGCTGCCGTTGTTGTCGGTGCGGCTGTTGTCGTTGGTGCTGCTGTTGTTGTCDesign primers
1112190GGTGCGGCCGTTGTCGTC-GGTGCGGCCGTTGTCGTC-GGCGCTGCTGTTGTCGTCDesign primers
1112245GCGCTGCTGTTGTCGTTGGTGCTGCTGTTGTCGTCGGTGCGGCTGTTGTCGTCGGTGCGGCTGTTGTCGTCGDesign primers
1112318TGCGGCCGTTGTCGTCGG-TGCGGCCGTTGTCGTCGG-TGCAGCGGTTGTCGTTGG-TGCAGCGGTTGTTGTCGG-TGCGGCGGTTGTTGTTGG-TGCAGCCGTTGTCGTCGG-TGCGGCCGTTGTCGTCGG-TGCGGCTGTTGTCGTCGGDesign primers
1112463GCTGCTGTTGTCGTTGGT-GCGGCTGTTGTCGTCGGT-GCGGCTGTTGTCGTCGGT-GCGGCTGTTGTCGTCGGT-GCGGCTGTTGTCGTCGGT-GCGGCCGTTGTCGTCGGT-GCAGCGGTTGTCGTTGGTDesign primers
1112592GCGGTTGTTGTCGGTGCAGCGGTTGTCGTTGGTGCAGCTGTTGTTGTTGGCGCAGCTGTTGTCGTCGGTGCGGCGGTTGTTGTCGGTGCGGCGGTTGTTGTTGGTGCAGCCGTTGTCGTCGGTGCGGCGGTTGTTGTCGGTGCGGCGGTTGTTGTTGGTGCAGCCGTTGTCGTCGGTGCGGCGGTTGTTGTCGTCGCGDesign primers
1155635AAATATATTTACATATTTTTATAGATATTTDesign primers
1302116ATTTT-ATTTT-TTTTT-CTTTT-ATTTGDesign primers
1503302AAAGGCGAGCATAAACCCCAAAAAGTCGAGCATAAACCCTCAAAAGTCGAGCATAAAACCTCADesign primers
1679609TTCCGTCATCCCGTCATTCCGTGADesign primers
1703690ACCTTGAGAGTCGAGTATAAAACCTGAGAGTCGAGCATAAAACCTGGGAGTCGAGCATAADesign primers
1951379ATCGACTTTTCGAGATATATG-CTCGACTTTTCGAGATATATG-CTCAACTTTTCAGGATATATG-CTCGACTTTTCGATATATATGDesign primers
1951467ACTTTTCAGGATGTATGCTCGACTTTCAGGATATATGCTCGACTTTCAGAATGTATGCTCDesign primers
1977461TT-CT-TT-TA-CT-TT-CT-CT-TT-TT-CT-TTDesign primers
1982122AAAAGTCGAGCATAACTCCGCGAAATCGAGCACAACTCCGCAAAGTCGAGCATAACCCGGDesign primers
1986767AGCCAAAAAGCCTAAACGCCAAAADesign primers
2014511AAAAGGGATTAAAAGAGGGATTACAAGAAGGATTAADesign primers
2050446AAAATTTTAAAAATTTTTATTAGATTTTAADesign primers
2068816CCGTCCCCGTG-CTCTCCCCGTG-CTCTCCCCGTG-CTCTCCCCGTGDesign primers
2133701TTTTAGATATATGCTCGACTTTCGAAATATATGCTCGACTGCTAGGATATATGCTCGACTDesign primers
2189077AGACGTTCAAGCCGCCGTTCAAGCCGCCGTTCAAGCDesign primers
2189114GCCGCTCAAGCCGCCGTTCAAGCCATCGTTCAAGCCGCCGTTCAAGCCATCGTTCAAGCCGCCGTTCAAGCCGCCGTTCAGGCCGTCGTTCAGGCCGTCGTTCAAGCCGCCGTTCAAGCCGCCGTTCAGGCCGTCGTTCAGGCCGTCGTTCAAGCCGCCGTTCAAGCCGCCGTTCAGGCCGTCGTTCGAGCCGCCGTTCAGGCCGTCGTTCGAGCCGTCGTTCAAGCCGCCGTTCAAGCCGCCGTTCGAGCCGTCGTTCAAGTCDesign primers
2189398GGTCGTCGTTCAAGCCGCTGTTCGAGCCGTCGTTCAAACCGCCGTTCGAGCCGTCGTTCAAGCCGCCGTTCGDesign primers
2189471GCCGTCGTTCAAGTCGTCGTTCAAGCCGTCGTTCAGGCCGTCGTTCGAGCCGTCGTTCAGGCCGTCGTTCAAGCCGCCGTTCAGGCCGTCGTTCGAGCCGTCGTTCAADesign primers
2329903TTAAAAAATTTAAATAAATTTTCAAAAAGTDesign primers
2561171TTTTCTTCCTTCTTTTATCCCTTCTTTTATTCCCTCDesign primers
2580121AGCGAATAGTGCAAGCGAATAGAGCAAGCGAATAGAGAADesign primers
2612049TTTTTTTAATTTTTTGCCGATATATTTGATTTTTTGCTGATATATTTGGTTTTTTGCCGADesign primers
2741986TACCCATAACCATATCCATAGCCADesign primers
2768793TTTGTTGATTATTATTTTGATTATTATTTTGATTATDesign primers
2769209TTC-TGG-TTG-TTA-TTG-TTA-TTG-TTG-TTA-TTG-TTG-TTG-TTA-TTA-TTGDesign primers
2771373CGCGTCGCTCTACTCGTCGCTCTACCCGTCGTACTACTCGTCGGTCTACTCGCCGCACTACTCGCCGCTCTACCCGTCGCTCTACTCGCCGATCTADesign primers
2771486CGATCTACTCGTCGCTCTACTCGTCGCTCTTCTCGCCGCTCTTCTCGTCGCTCTTCTCGTCGCTCTTCTCGCCGCACTACCCGTCGCTCTTCTCGTCGCTCTACTCGTCGATCTACTCGCCGCTCTTCTCGTCGGTCTACTCGTCGCTCTTCTCGTCGCTCTACTCGTCGGTCTTCTCGCCGCTCTACCCGTCGCTCTACCCGTCGCTCTTCTCGTCGCTCTACTCGTCGCTCTACCCGTCGCTCTACTCGTCGCTCTACTCGCCGCTCTACTCGTCGGTCTACTCGCCGCTCTACTCGCCGCTCTACTCGTCGCTCTACTCGCCGGTCTACTCGTCGCTCTACTCGCCGGTCTACTCGTCGCACTACTCGTCGGTCTACTCGTCGGTCTTCTCGCCGCTCTACTCGTCGGTCTTCTCGCCGCTCTACTCGTCGCTCTACCCGTCGGTCTACTCGCCGCTCTACTCGTCGATCTACCCGTDesign primers
2772112TTCACGGCGTAGCAGTTCTCGACGCAGCAGTTCGCGGCGTAGCAGTTCTCGGCGTAGCAGTTCTCGGCGTAGCAGDesign primers
2772206CGGCGCAGCAGTTCG-AGATGCAGCAGTTCG-CGGCGTAGCAGTTCT-CGGCGCAGCAGTTCA-CGGCGCAGCAGTTCA-CGGCGCAGCAGTTCA-CGGCGCAGCAGTTCGDesign primers
2778702GCTTCT-AATTCT-AATTCT-AATTCT-AATTCT-AATTCTDesign primers
2803957TCCTCATCCTCTTCATCATCGTCADesign primers
2952897ACCTACAAAAAACTACTAAAACCTACAGAGDesign primers
3087875CCATTTTATTTGCGGATTATCTGCTTTATTTGCGGATTTTCCATTTTATTTGCCGTTTAGDesign primers
3232451AAAAATTTAAAAATTGCAAAATTTDesign primers
3249604AA-AA-GA-AA-AG-GA-GA-AA-GA-GA-AA-GADesign primers
3251786CCGGTTTTGGCTTTGCCGGCGTTGGTTTTGCCGGTGCCGGCTTTGCCGGCGTTGGTTTTGCCGGTGCCGGCTTTGDesign primers
3364472GCTACTGGTGCAACTGGTGCTACCGGTDesign primers
3405988TTGGTGCCAATATGGTGCCAAACCGGTGCCAATDesign primers
3471886CAAATGGGTCAGATGGGTCAGATGGGTDesign primers
3503674ACCTTGAGCGCCTTGAGCAGCTTGAGCDesign primers
3592474TCTCTTTTATTGGCATCTCTTTTATTGGAGCCTCTTTAATCGGCADesign primers
3700020AAAAATAAAAAAGAATAAAAAAAAADesign primers
3710919CAGCTTCTGCTTCAGCTTGAGCTTDesign primers
3715635AATTAATATTAAAAGTAATATTAADesign primers
3733847TATTTTCTTCTTGTTTCTTCATTTTTCTTCDesign primers
3784509TATTTTTCTTTTTTTCTATTCTTCDesign primers
3800138CAGGTTTCCCAGGTGGTGGTTTCCCTGGTGGAGGCTTCCCCGGTGDesign primers
3835578CCGCTTTCGCTTCCCCTTCTGCTTDesign primers
3898208AAAATTCAAACATTCAAACATTCADesign primers
3962543CAATAACAAGAACATTAATAATAADesign primers
4074331AACAA-AACAA-AACAG-AACCA-AATAA-AACTADesign primers
4103433AACTTCCACATAACTTCCTCATAAGTTCTACATDesign primers
4108976ATATAAATATTAATATATATATGADesign primers
4132316CGCCGCCGCCCCAGCCGCCGCCGADesign primers
4205924ATCCATATCTATATCCAAATCCAGDesign primers
4424689CCGTTTTTGAAAATTTATCGGCCGCTTTTTAATTTTTATCGGCCGCTTCTGATAATTTATCGGDesign primers
4478069CAAAGAAAACAAAGTAAACAAAGAAAGDesign primers
4486239CTTATGAGGAACTTATGTGGAAGTTATGAAGAADesign primers
4520424TAAAAATATAAATAAAATTAAAGADesign primers
4558900GGCGGGCTCGTGATGGGCTCGTGGTGGGCTTGTDesign primers
4665101ATTCGAGATATACACTCGACT-TTTCGAGATATATGCTCGACT-TTTCGAGATTTATGCTCGACT-TTTCGAGATTTATGCTCGACT-TTTCGAGATTTATGCTCGACTDesign primers

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