Microsatellites /Tandem Repeats database

Genome: Bacillus subtilis subsp. subtilis 6051-HGW

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
111379GAAGAAGAGCTTGAAAAAGAGCGTGAAGAACAGATTDesign primers
651828TATGGGCGGCATGGGCGGTATGGGTGGDesign primers
745996ATTAGTATATTAGGATTTTAGTATDesign primers
1072308CT-TT-TT-TT-CT-AT-TT-TT-CT-TT-TT-TTDesign primers
1122809CGTTTTTATTGGTTTTTGTTCGTTTTTCATDesign primers
1207969CTTCCTCTTGCTGTTCCTCCTCCTDesign primers
1251087TTTTTCTTTATCTTTCTCTTTGTCDesign primers
1266632AAAAGAAGAATATTGAAAAGCGAAATATTGAAAAGCGAAATATTGAAGAGAAGAATAATGDesign primers
1277676AAAACAATGGCGAAAAAAATGGCAAAAACAAATGCGDesign primers
1280632TAACCTCCCCCATATCCTCCGCCATAACCTCCGCCGDesign primers
1372922AA-AC-AA-AC-CA-AA-AG-AA-AA-AA-AC-AC-ADesign primers
1431334AG-GG-TT-TT-TT-AG-TA-TT-TT-TT-AT-GT-TT-TT-TTDesign primers
1482040TTTTTGTATTTGTTTTGGTTATTGDesign primers
1509712GACGAA-GAGGAA-GAGGAA-GAAGAADesign primers
1692156TCAAAATACTCAAAACACTCAAAATGCDesign primers
2124195CGCCAAACCTGATGCAAAACCTGATGTCAAACCTGADesign primers
2207725TAATTTTTTAATTGTTTAATTTTADesign primers
2320199TATTATATTGTAATAAATTATATCADesign primers
2518922TC-TT-TG-TT-AT-TC-TA-TG-TT-TT-TC-TC-TG-TT-TTDesign primers
2672244TTCTTCTTCGTCTTTTTCTTCTGCDesign primers
2678482AAGTGGTAATGTGGTAATGTGGTADesign primers
2777785AAAAAATAAAAAATTAAGAAAATADesign primers
2871396CTC-TTC-CTC-TTG-TTC-TTC-CTC-CTCDesign primers
3159342TCATCTTCATCCTCTTCTTCATATDesign primers
3274533CTGCGGCTTTTTCTTCTGCCGCTTTCTCTTCTGCTTGTTTTTCTTDesign primers
3352095TATTATATAACGTTATATAACATTATATATTGTTATATTADesign primers
3574809CCGTTTGACGAACTGTTTGATGAACCGTTAGAAGAADesign primers
3812625TCGTCTTCATCAAGATCTTCTTCGTCAAAATCGTCGGCTTCAAGADesign primers
3893598GGACAGCAAGGACAACAAGGACAGCAGDesign primers

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