Microsatellites /Tandem Repeats database

Genome: Bacillus megaterium WSH-002

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
108606GAT-TTA-GAA-GAT-GAT-CTA-GAC-GAT-GAT-GAA-GAA-GATDesign primers
173942TGCTGCTGCTTCTGGTGCTGCTGGDesign primers
442799TCAAACAAACCAAACAAATCAAACAATDesign primers
481414AAATTGAAAGTGTAATTGAAATTCDesign primers
541091AAGAAAAATAAAAAAAGATAAAGGAAAATADesign primers
566741AATTTTAATTAATTGTAATTAATTTAAAATDesign primers
1013470AA-GA-AA-AA-AA-AG-AA-GA-AA-AA-GA-AA-AA-ADesign primers
1060060TTCAGCAGC-TTCAGCAGC-TTAAGCAGCDesign primers
1103164AAAAGAACAAAAAGAAAAAGAAGAAAAAGCAAAAGAAACAAAATADesign primers
1158278CACCAACACCTACTCCAACACCACDesign primers
1204344ATTGAAAAAATGAAAAATTCAAAADesign primers
1242872CAAAATCTAAATCAAAATCATAATDesign primers
1279297CTTTTTTTCATCTGTTTTTAATGTTATTTTCATDesign primers
1514184GA-TA-AA-GA-AA-AA-AA-TA-AA-GA-AA-AADesign primers
1636060TTACTTGTTTTTGCGTGTTTTATCTTGTTTDesign primers
1658135ATTTTAAATATTTTAAAAATTTAAAATDesign primers
1824543GAAGAGAACGATGAGAACGAAGAAAACDesign primers
1829580AGACCGTTTGGCTTTGGCAGACCGTTTGGTTTCGGACGCCCGTTTGGTTTTGGCDesign primers
2043952TTAAAAAAATAAAAAAAATTAATAAAADesign primers
2057807ATTAAATTATATTCATTTAAAATAADesign primers
2060353AAATAAATAAAAACAAAAAAAAGTAAAAAADesign primers
2063587AGAATT-AGAACT-AGAACT-AGAACTDesign primers
2172065TATTCTACTAATTATTCTTCTTATTAATCTACTACTDesign primers
2199412GTGGTCACACAGTGGTCACGGATTGGTCACAGADesign primers
2306920CAGGATCAGCATCAGGTTCAAGATDesign primers
2323147ATGAAAATGGAAATGAAGCTGAAADesign primers
2346213GGCGGCGGTGGCTGCGGCGGCGGTDesign primers
2444633TGATCACCATCATCATCACGATCATGATCACGATCADesign primers
2481721AGGAGCTTGAGGAGCCTGAGGAGCCTGDesign primers
2569710AAAGAACTAAAAGATAAAGAAGCAAAAAATGAAGAACTAAAAGCTDesign primers
2692558ATTTCAATTCCTTTCATTGCACTTCDesign primers
2709019TCAATTTCCATTTCCATTTCAAGTDesign primers
2735250CCGTAGCCGCCGTAACCGCCGTAGCCADesign primers
2774370CCTTCAACACCGTCAACTTCAGCACCGTCAACTTCAACGCCGGCADesign primers
3176980CTTTTTT-CTTTTTT-CTTTCTT-CTTTTATDesign primers
3188461ATCAAAAACAATCAAATTCATTCAAAAAAADesign primers
3250209TTATCAATATCATTATCGTTGTCATTATTADesign primers
3378911AATCGCTAAATGGCTAAATCACTADesign primers
3513746TGCTTTTTCTTTGGCTTTTTCTTTDesign primers
3573723TTCCTGTACGGTCTCCTGTGCGGTCTCCTGTGCGGTDesign primers
3573772TCCTGTACGTCT-TCCTGTACGGTC-TCCTGTACGGCC-TCCTGTACGGCC-TCCCGTACGGCC-TCCTGTACGTTCDesign primers
3574508TTATTTTGG-TTGTTTTGG-TTGTTTTGG-TTGTTTTGGDesign primers
3576338CGCCGTTCTACTCGCGGTACTCGTCGCTCTTCTCGCGGCACTCGCCGTTCTACTCGTCGCTCTCGTCGTTCTACTCGCCGTTCTCGCCGTTCTACTCGCCGTTCTCGTCGTTCTACTCGCCGCTCTCGTCGTTCTACTCGCCGCTCTDesign primers
3583208AAGAAAGAAAAAGAAAAAGAAGAAAAGAAADesign primers
3583239AAGATAAAAAAGAGGACAAAAAAGACAATAAAAAAGDesign primers
3583690CAATAACGGCGGCAATAATAGCGGCAATAATAGCGGDesign primers
3680156GCTAAACCAACGGCAACACCAACGGCAACACCAACGDesign primers
3757774CTAAACTTTTGTTAAGCTTTTGTTAAGCTTTTGDesign primers
3779317CGCCGTTCTACT-CGCCGCACTACT-CGCCGCACTACT-CGCCGCACTACT-CGCCGCACTACT-CGCCGTTCTACT-CGTCGTTCTACT-CGCCGTTCTACT-CGCCGTTCTACT-CGTCGTTCTACT-CGCCGTTCTACT-CGTCGTTCTACT-CGCCGTTCTACT-CGCCGTTCTACT-CGCCGTTCTACTDesign primers
3813797AG-TA-AA-AA-TT-AA-AA-AG-CA-AA-AA-GA-AA-AADesign primers
3821132GTTTGA-CTTTGA-CTTTGA-ATTTGADesign primers
3936830AAAAGGTTTTAAAAGTTCTTAAAAGGTTTTDesign primers
3962034TCTTGCTTTTGCTCTTCCTTTTGCDesign primers
4281399TTATTCTTTTGTTTTCTTTTTTATTCTATADesign primers
4495446TTTGCTATTGCTTTTGCCATTGCTDesign primers
4528336TGC-TGT-TGT-TGT-TGC-TGT-TGC-TGTDesign primers
4528534CTTGTTCTTTTTGTGCTTGTTCTTGTGCTGCTTGTTCTTGCTGAGDesign primers
4601542GAAAAAAAACGAAAAGAAAACGCAAAAAATACGDesign primers
4618509ATGATGATGGTGGTGATGATCATGDesign primers
4644696TGTATCAGGTGTATCCGGTGTTTCAGGDesign primers
4903447TTTCCTTTTTCTTTCCCTGTTCCTDesign primers
4920564TTTTTTTATTTCTTTTTGTTGTTTTDesign primers

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