Microsatellites /Tandem Repeats database

Genome: Halorhodospira halophila SL1

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
17287GGCTCAGCAGGATCCGGGGATGGGTCAGCAGGATCCGGGGATGGGTCAGCAGGACCCCGGCATGGAGCAACAGGATCCAGGGATDesign primers
231248CACCAG-CACCAG-GACCAG-CACCCGDesign primers
242504CCCGACCGCGACCCGGACGCCGACDesign primers
258437GCCCGCGCGCGCGCGTGCGCGCATGCGCGCDesign primers
269937CGCCCGGCGGGTGCCCGACGGGTGCCCGACGGGDesign primers
342572GACGACACCGACGACATCGATGACACCDesign primers
362452CTTCGCCAT-TTTCGCCAT-TTTCGCCATDesign primers
402470CATGGCCCTGGCCGTCATGGCCTTCGCCGGTATGGCCATGGCCCTDesign primers
442958TACATGAAC-TCCATGAAC-TCCATGAAC-TCCATGAAC-TCCATGAACDesign primers
517435TCGTCCTCCTCCTCGACCTCGTCCTCTTCCDesign primers
517498TCGGGC-TCGGGC-TCCGGC-TCCGGC-TCCGGC-TCGGGTDesign primers
517535CAGGTT-CAGGTT-CAGGTT-CAGGTT-CAGGTT-CAGGTT-CAGGTT-CAGGCTDesign primers
517588TCCGGTTCGGGTTCGGGTTCGGGTTCGGGTTCCGGCTCCGGTDesign primers
548737CTCACCGGCCTCCCCGGCCTCCCCGGCDesign primers
663362CAGGGCCAGGCCCAGGGCCAGGACDesign primers
693999TCCCGTGGAACGGGCCCCCCACATGCGGTGGAACGGGCACCCCTCATCACGTGGAACAGGCCACCCACTDesign primers
717874GATCGTGCCGGGATTGTGTCGGGTTTGTGCCGGDesign primers
729489GATCCGCTCCGATCGGATCTGCTCCDesign primers
757099GCCGCGCGGCGCCGAGCCGCGCCGCDesign primers
793553CTCGGCGGCATCGGCGGCTTCGGCGGCDesign primers
802922GGCCCCGGAACTG-CGCCCCGGAACTG-CGCCCCGGAACCGDesign primers
806670GGCCGCGGCAGCGGCCGAGGCCGCDesign primers
812046TCGGCGGCGGCGTAGGCGTCGTCGDesign primers
840153GGCTGGCAAGAGGGCCGGCAAGAAGGCCTGCAAGAGDesign primers
904385GAAGGCGTAGGCGCAGGCGACGGCDesign primers
965854GCGCCGCCGCCGGCGCCTTCGCCGDesign primers
969568CCGGGTCCGAGTCCGAGTCCGGCTDesign primers
981823CCTCGGCCACGGCCTCGGCATCGGDesign primers
985732CGCCGAGGCCGAAGCCGACGCCGCDesign primers
988995GCCGTGGCCGAGGCCCTGGCCGCGDesign primers
1004354CGGCCTCCGCCTCGCCCTCGGCCGDesign primers
1007258CCCGGC-CCCGGC-GCCGGC-TCCGGCDesign primers
1035457CCTCGGCCAGCCGCTCGGCCTGCCCCTCGGCGAGCADesign primers
1090134CGCCG-CGCCG-TGCCG-CGTCG-CGCAGDesign primers
1101356GTCCAG-CTCCGG-CTCCGG-CTCCGG-CTCCGG-CTCCGGDesign primers
1116535CCGCGT-CCGCCT-CCGCCT-CCGCCTDesign primers
1231632CGGGCCCGGCCCGGCCGGACCGGGCDesign primers
1284842TCCGCC-TCCGCC-TCGGCC-TGCGCCDesign primers
1426331CTGGTCATCGGCCTGGTCCTCGGCGTGGTCATGGGCDesign primers
1441210TCGAGATCGAGGGCGAGATCGAGTDesign primers
1453688CACCCGCACCTGCTCCCGCATCCGDesign primers
1459368GTG-GTG-GTG-GTG-ATG-GTG-GTG-GTGDesign primers
1487256GCAACA-CCAACA-CCAACA-CCAACADesign primers
1533920CAGCAGCAGCGGCACCAGCGGCAGDesign primers
1873926GCCGCTGGCGCTACCGCTGCGGCTDesign primers
1880234TGGAGCTCCTCATTCATCGACTGAAGCTCCTCATTCATGGATTGGAGCTCTTCATTGGTAGACDesign primers
2011177CGGCCACGGTCACGGCCACCGCCAGGGCCADesign primers
2059809CGGCGGCGGTGGCGGCGCCGGCGGDesign primers
2117662ACCGCC-ACCGCC-ACGGCC-ACCGCC-AGCGCCDesign primers
2236801CAGCAGCTGCAGCGGCAGCAGCACDesign primers
2398919CCCCGGCACCCCGGCCCACCGGCADesign primers
2430438GGAGCC-AGAGCC-CGAACC-GGAGCC-AGAGCC-CGAGCC-GGAACC-CGAGCC-GGAACC-GGAGCC-GGAGCC-GGAACC-CGAGCC-GGAGCC-CGAGCC-CGAGCC-AGAGCC-AGAGCCDesign primers
2430547GAACCGGATCCGGAGCCGGAACCCDesign primers
2430572AGCCCGAACCGG-AGCCGGAACCCG-AGCCGGAACCCG-AGCCCGAACCGGDesign primers
2430621GCCGGA-GCCAGA-GCCAGA-GCCAGA-GCCGGA-ACCGGA-GCCGGA-GCCAGA-GCCCGA-GCCCGA-GCCCGA-GCCCGA-GCCCGA-GCCCGA-GCCCGA-GCCGGADesign primers
2567711CATGGGTGGCATGGGCGGCATGGGGGGCATGGGCGGDesign primers
2602788GGACCGGGATCGGTACCGGGATCGDesign primers
2627486TGATGACGGCTTTGAGGATGACGGCTTCGAAGACGACGGCTTCGADesign primers

Please help us improve this resource by reporting problems, suggestions etc.