Microsatellites /Tandem Repeats database

Genome: Pseudomonas poae RE*1-1-14

Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
303497CGACCTGGAAGCCGGCCTCGAAGCCGCCCTGGACGCDesign primers
378177GCTGGCGCTGACGTTGGCGCTGACDesign primers
500269CACCGGCGCCGGCAGCGGCATCGGDesign primers
637747CCGATGCCGGTGCCGATGCCGATCDesign primers
666869ATATCA-ATATCA-ACATCA-ATAACADesign primers
670322AGCTTCAAGCTTCTAGCTGCAAGCTGCADesign primers
753123GGCAAGCCCGCTCGCCACAGCAAGCCCGCCTGCCACAACAAGCCCGCTCACCACDesign primers
815128GCG-GCG-GCG-GGG-GAG-GCG-GTG-GCGDesign primers
910657TGGCGCTGCCGCTGGTGCTGGCGCDesign primers
972333GTGCTGGGTTGTGCCGGGATGTTCTGGGTCDesign primers
1010360TGTTTTTGTTGTTGTTATTGTTTTDesign primers
1160848GCGGCGCTGCCCGGCGGGGCGCTGCDesign primers
1185072CGATGGCGATGAAGATGGCGATGGDesign primers
1187788TTGGCG-GTGCCG-GTGCCG-GTGCCG-GTGCCG-GTGCCGDesign primers
1560114TCGGCT-TTGGCT-TTGGCT-TTGGCTDesign primers
1576732AAGCCCGCTCGCCACAGTAAGCCCACTCACCAGAGTAAGCCCACTCACCACAGTAAACCCGCTCGCCACAGGDesign primers
1663641ATGGTAACGGCAGCGGCAACGGTAACGGCAGCGGTAATGGCAACGGTACCGGCADesign primers
1663757GGT-GGC-GAT-GGC-GGC-GGC-GGT-GGCDesign primers
1729300ACGCTTTTGATC-TGGCTTTTGATC-TGGCTTTTGATCDesign primers
1835626AGGTCAAGGACAAGCTCAAGGTCADesign primers
2047855CCGCCC-CTGCCC-CTGCCC-CTGCCCDesign primers
2085394GCAAGCCCGCTCGCCACAGGAAGCCCTCTCACCACAACAAGCCCTCTCACCACADesign primers
2090625CACCAGCAGCAGGACCAGCACCGGDesign primers
2131732GATGCC-GTAGCA-GTAGCC-GTAGCC-GTAGCC-GTAGCC-GTAGCC-GTAGCC-GTAGCCDesign primers
2180059CGATGGCGATGCCGTTGGCGATGTDesign primers
2188389GCTGCTGCTGCCGCTGTTGTTGCTDesign primers
2335764CCTGGCCCTGACCCTGACCCCGGCDesign primers
2350709AAAGCAGATCA-AAAGCAGATCA-AAAGCAGGGCA-AAAGCAGGGCADesign primers
2433989AAAAG-CCAAA-GCAAA-GCAAA-GCAAA-GCAAA-GCAAA-GCAAA-GCAAA-GCAAA-GCAAA-GCAAADesign primers
2487818TTGTTT-TTGTTT-TTGATT-TTGTTTDesign primers
2566458CATCGGCATCGCCATGGGCCTCGGDesign primers
2639149AAGCCCGCTCGCCACAATAAGCCGGCTTGCCACAGTGAGCCCGCTCGCCACAAADesign primers
2748567GGCGTGGCCGTGGGCATGGGCGCGDesign primers
2808318CAGCAGCAGCAGCAACAGCACCAGDesign primers
2907546TTGCTC-TTGATC-TTGATC-TTGATCDesign primers
2933079CGAGCAAGCTCGCTCGCC-ACAGCAAGCTCGCTCGCC-ACAGCAAGCCCGCTCGCCDesign primers
2998062CGCTGCCGCTGGCGGTGCTGCTGCDesign primers
3000722TTTGCTTTGGCTTTTGATCTTGCTTTTGATDesign primers
3007497CCGGTGCCGGCGCGGGCTTGGCCACCGGTGCAGGTGCCGGCTTGGCGACCGGTGCAGGTGCTGGCTTGGCGADesign primers
3020890TTGCCCTTCCCCTTGACCTTGCCTDesign primers
3021212CTGCTGTTGCTGTTGCTGCTCCTGDesign primers
3027727GGCTCGGGTTCGGGCTCCGGCACGDesign primers
3064439TGCCTG-TTCCTG-TTCCTG-TGCCTGDesign primers
3167895GTCGGCGTGGGCATCGGCGTCAGCDesign primers
3170339GCTCTT-GATCTT-GATCTT-GATCTTDesign primers
3357755AGTGCGTGA-AGTTCGTGA-AGTTCGTGA-AGTTCGTGADesign primers
3372787TTGCGACTGCTTGATACTGCTTCCGCCTGCDesign primers
3526801GTCGGCCTTTTTGGCTTCATCAGCCTTTTTGGCCTCGTCGGCTTTCTTCGCTTCGTCAGCCTTTTTCGATTCDesign primers
3599692CATGCCGCCCATGCCACCCATGCCGCCDesign primers
3758416CGTGGCGAGCGGGCTTGTTGTGGCGAGCAGGTTTGTTGTGGCGAGCTGGCTTGCDesign primers
3767296GTG-GTG-CTG-GTG-GTG-CTG-ATG-GTGDesign primers
3773662AACCGCCGT-CACCGCCGT-CACCGCCGTDesign primers
3952943CCATCGCCAACGGCATCGCCTTCGDesign primers
4013185ACCGCCACCGGCACCGCAGCCGCCDesign primers
4062608CGCCCTGCCCCGCCGCGACCCGGCCDesign primers
4161448ACCAGCACCAGGAACAGCACCAGCDesign primers
4494368AGCACCAGCATCACCACCAGCAGCDesign primers
4533128GCTGCGGGCTTGGCAGGTGCTGGTTTGGCAGCGGCAGGCTTGGCGDesign primers
4594611GACGGTGACGGCGACCGTGTCGGTDesign primers
5140312TCTTCGTCCTCGTCTTCGTCTTCCDesign primers
5225933CAGCGTCAGCATCAGCGGCAGCGCDesign primers

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