Microsatellites /Tandem Repeats database

Genome: Shewanella baltica OS185

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
57692TTACTGTTGTTATGCGTTAAGTTACCAATGCTATGCGTTAAGCTTCTGGCGTTATGCGTTAAGDesign primers
92961CAGTGTATCGGTGTATCAATGTATDesign primers
167399AAACATACA-GACAATACA-AAAAATACA-AAAAATACA-AAAAATACA-AAAAATACADesign primers
332518GGCTTGATGACTT-GGCTTGATGACTT-GGCTTGATAGCTTDesign primers
485537GTTCGCTAAG-ACTCGCTAAG-ACTCGCTAAGDesign primers
523051AAAAAAATCTAATTGATAAAAATATCATTGATAAAAATCTAATTGDesign primers
551023CAACCACAACAAAAACCACAAGCADesign primers
573132GAAGCTAAGCCAACT-GAAATTAAGCCAACT-GAAATTAAGTCAACT-GAAATTAAGCCAACTDesign primers
598821AAAATCAAAACCAAAGTCAAAATCDesign primers
629539GCTGATA-ACTGATA-ACTGATA-ACTGATADesign primers
629568TTGAGAG-TTGAGAG-TTGAGAG-TTGAGAG-TTGAGATDesign primers
634060CCAGTACGGCCAGCACGGCCTGTACGGCCAATACGGDesign primers
704202ATTAATGCTTTAAATAATGTTTTAAATAATGCTTTADesign primers
714424TTCTCGT-TTGTTGT-TTGTTGT-TTGTTGT-TTGTTGT-TTGTTGTDesign primers
717180CTAAGCCCTTTAT-ATAAGCCCTTTAT-ATAAGCCCTTTTTDesign primers
717952TATCTG-TTTCTG-TTTCTG-TTTCTGDesign primers
753164GCATAGG-GCATAAG-GCATAAG-GCATAAGDesign primers
766456TTCTGTTCAGCTTAGGTTCAGCTTAGGTTCAGCDesign primers
786015TATGGGCGGTATGGGTGGGATGGGCGGAATGGGCGGDesign primers
796510TATCTATCACCAGCTATCTGTCACCAGATCTCTATTACCAGCTATCTATCACAAGCDesign primers
809452CATAGTGAAGTAAGAAATAGTGCAGTAAGACATAGTGCAGTAGTADesign primers
862544GCGTAATA-ACGTAATA-ACGTAATADesign primers
933569AGAGAGCCACTTAGCAGAGAACCGCTTAACAAAGATCCACTCAGCDesign primers
984973CAAGTTTGCTTAAGTTCAGTTTGCTTAAGTCCAGTCTGTTTAAGTCCTGTTTGCTTAAGCDesign primers
994536GCTGATGC-TCGAATGC-TCGAATGC-TCGAATGC-TCGAATGC-TCGAATGCDesign primers
1013782GCTGATATTTAGGCCGACATTTAGATTGATATTTAGDesign primers
1037676CAAACTTAAACTCAAAATCAAACGDesign primers
1067325GAATTTATTAGCTTGAATCAATTAGCTTGAATTTATTAGCTTDesign primers
1139187ATGCTCGAGGTGCTCAGGGGGATCGAGGTGCTCAGGGGGCTCGAGGTGCTCAGADesign primers
1148870CTTAAGTGACTGTTGCTTAAATGACAGTAGCTTAAGTGACTGCAGDesign primers
1166399CTAAATTAGCTAACTTAGCTAACTTAGDesign primers
1172802AAACACAGA-CAACACAGA-CAACACAGA-CAACACAGADesign primers
1180142GGAGAGGGCGGAGAGCGCGGAGAGCGCDesign primers
1181028AAGCTTAGTGACTGAAGCTTAGTTACAGAAGCTTAGTTACAGDesign primers
1181605TAGCAGAGCTAAAACAGCAGAACTAAAACAGCAGAGCTAAAA-CAGCAGAGCTAAAACAGCAGAACTAAAACAGCAGAGCTAAAA-CAGCAGAGCTAAAACAGCAGAGCTAAAACAGCAGAGCTAAAADesign primers
1206809ATTTAATGCGGCTTAAGTTAACGCGACTTAAGTGAATGCGGCTTAAGTTAATGCGGTTTGDesign primers
1210854TGCTTGATATTGATTGCTATCGATTGATATDesign primers
1251565TAAACGAAGCAGTAAAAGCAGCAGTAAAAGCAGCAGDesign primers
1275328TTAGCAT-CTAGCAT-CTAGCAT-CTAGCATDesign primers
1279258ATGAAAGCTAAGC-ACAAAAGCTAAGC-ACAAAAGCTAAGC-ACAAAAGCTAAGCDesign primers
1296188TTTTACTC-ATCAGCTC-ATCAGCTC-ATCAGCTC-ATCAGCTC-ATCAGCTC-ATCAGCTC-ATCAGCTC-ATCAGCTCDesign primers
1296261TCAGCTCA-TCAGCTCA-CCAGCTCADesign primers
1308951TTTGGT-TAGGGT-TAGGGT-TAGGGT-TAGGGT-TAGGGTDesign primers
1401151TGTTAGTCGCATTGCTAGTGGCATTGTTAGGCGCATDesign primers
1507687TAATATCAACAATATCAATATTATCAADesign primers
1542605AAAGCCACTCCATCAACAGCCACGCCATCAAAAGCGACGACATCADesign primers
1592172AAATAAGTCTAAATAAGTTAAGTCAAAATAAGTTAAGTCAAAATADesign primers
1620091TCACTAATACGCCATTAATACGCCATTAATACGDesign primers
1625602TACGCTAA-TACGGTAA-TACGGTAA-TACGGTAA-TACGGTAADesign primers
1645201GCCCAGAGCCCTGAACCCAGAGCCCAGADesign primers
1682700ATACTGGCGATAG-ATACTGGCGATAG-ATAATGGTGATAGDesign primers
1696001TGGAACA-AGGAACA-AGGAACA-AGGAACADesign primers
1735086ACTGTTCAATTAAAATGGTTCAATTAAAACGGTCCAATTAAAACTGTCCAATCAAADesign primers
1764845TGGACGTGACTCAATCAGACGTTACTCAATTGGATGTGACTCAATDesign primers
1782795GGGGTTCCGGGTGTACCTGGTGTTCCGGGAGTGCCTGGTGTTCCGGGTGTGCCADesign primers
1794543AATTTAGCGACTCAATATAGTGACTCAATATAGCGACTCDesign primers
1818231GTTTTGGGTCAATCAGTTTTGGGTAAATCAGTTTTGGTTAAATAADesign primers
1828224CATTGATTGAAGCATTGATTTAACCATTTTTTGAAGDesign primers
1829660AGTTTAAGTAACAGCAGTTTAAGTAGCAGCAAGTTAAGCAACAGCDesign primers
1877136CTATTAGTGCCATTAGTGCCATTAGTGCCATTAGTGCTGTTAGTGDesign primers
1878998AA-AT-AG-GG-AA-AT-AG-AG-AA-AT-AG-AGDesign primers
1886392TTATATCGATAGTTATACCGAGAGTTATATCGAAAGDesign primers
1922112TGATTTGATAGAAT-TGGTTTGATTGAAT-TGGTTTGATTGAAT-TGGTTTGATGGAATDesign primers
1926911TTGCAGA-ACTTAGA-ACTTAGA-ACTTAGA-ACTTAGA-ACTTAGA-ACTTAGA-ACTTAGA-ACTTAGA-ACTTAGA-ACTTAGA-ACTTAGADesign primers
1947214TTAACATAAGTTAACATCATTCGACATAAGDesign primers
2022726TCTATCGACTTAGCATCTGCCGGCTTAGCATCGATGGAATTAGCADesign primers
2024675CTGTGTTTAAGGCCCGTATTTAAGGCTTGTGTTTAAGCCDesign primers
2050627CTAAGAAAGAAAGTAAGAAAGTAAGAAAGTAAGAAAGTAAGAAAGTAADesign primers
2094592AAAGCCGAAGCTAAGGCCAAAGCAGATGCTAAAGCCGAAGCGGATGCTAAGGCCAAAGCCGATGCTGAAGCCDesign primers
2109200AGCTCTGACCTTGCAAACTTTTACCTTGCAAACTCTGACCTTGCCDesign primers
2112445TTTTGAAAAACAAGCTTTTGAAAAACCAGCTATTGGAAAACGAGCDesign primers
2125619CCGCTTGATTGCCACGCTTGATTGCTACGCTTGAGTGCCDesign primers
2142267TTTTGAGTTGGTTGTGAGTTAGTTGTGAGTTGGTTTTGAATTAGDesign primers
2164054TAAATCA-CCAATCA-CCAATCA-CCAATCA-CCAATCA-CCAATCADesign primers
2188252TTGAATTTGCAGTCAGTTAAATATGCAGTAAGGTAAATTTGCAGTAAGDesign primers
2217167CAGTTGTTGAAATGACTTGTTGAAATGACTTGTTGAAATDesign primers
2224538AGCCTGAGGTTT-CACCTGAGGTTG-TGCCTGAGGTTG-TGCCTGAGGTTG-TGCCTGAGGTTG-TGCCTGAGGTTG-TGCCTGAGGTTG-AGCCTGAGGTTGDesign primers
2304576ATTGCTTACAAGATTGTTTAGAAGATTGCTTAGAAADesign primers
2315611AGTGTGACTTCGTGTGGCTTAGCGTGACTCDesign primers
2316278ATCAAGCGGATAAGTAACAAGTGGATTAGTATCAAGCGAATGAGTDesign primers
2325926GCTTTAGTTGCTTCAGTTGCTTCAGTTDesign primers
2343303TTGTTGAAATGACTTGGTGAAACGACTTGTTGGAATGAADesign primers
2380174TATTGTGACCCAAGTTAAACATCATGTGACTCGAGTTAAACATCATGTGACTCGAGTTAAACADesign primers
2412222TTCGCTATGAACTA-GTAGCTATGAACTA-GTAGCTATGAACTA-GTAGCTATGAACTADesign primers
2413868ATCTTGTTCATCTTGTTTATCTTTTTCDesign primers
2420706GACCTCAGAAAAAACCTCAAAAAAGACATCAAAAAAGACCTCAAAAATDesign primers
2473965CATCATTAACGTCATTAACGTCATTAADesign primers
2531554TCGATAACTCGCGATGACTCTTGATAACTTDesign primers
2625322TAAACAAACATTT-TAAAGAAGCATTT-TAAAGAAGCATTT-TAAAGAAGCATTT-TAAAGAAGCATTT-TAAAGAAGCATTT-TAAAGAAGCATTTDesign primers
2632012ACTTGGCATTGAAATTAGCATTGAACTTGTCTTTGAAATCGGCATTGADesign primers
2690018CTTGTG-CTCATG-CTCATG-CTCATG-CTCATG-CTCATGDesign primers
2764419GCTCAGTGCTCAGTGCTTAGAGCTTAGAGCTTAGAGCTTAGAGCTTAGAGCTTAGAGCTTAGADesign primers
2766012TATTTCCAG-AATTTCCAG-AATTTCCAGDesign primers
2798127CACCTAACTCTAAACTAACTCTAAACTAACTCTDesign primers
2805307AACTCAACGCCACTCAACTAGACTCDesign primers
2807112AACAAAAACAATGACAAAAACAAGDesign primers
2846613GCGTTAATCTCGAAGTGTTATTCTCGAAGCGTTAGTCTCGATDesign primers
3010766AAGCATTGAAGAATAAGCAGTACTGAAGAATAAGCAGTACTGAAGAATAAGDesign primers
3015665TGCTAA-GGATAA-GGATAA-GGATAA-GGATAA-GGATAADesign primers
3056670ATTCACATTAGCTGCATTCATATCAGCGGCATTCGCATTAGTTGCDesign primers
3193200GATGAAATCAG-AGTGAAATCAG-AGTGAAATCAGDesign primers
3205413AGCTCTGGTTTAAGCCCTTGTTTAAGTTCTGCTTTADesign primers
3239947AATCATTTTTAAATCAATCATTGCTGAATCAATCATTGCTGAATCDesign primers
3261851GCTCAATCCACTTTTGTGCCATCCACTTTTGTGCCATCCACTTTTDesign primers
3268866GAGCCAATACATCTGGGCCAATGCATCTGAGCCAATGCATTTDesign primers
3282053TAGTACTGTTAGCCTTAGTACTGTGAGCCTTAGTTTTGTAAGCCTDesign primers
3284745ATGCGCTAACGCGCTAACGCGCTADesign primers
3376027TC-TC-TT-CG-TT-TG-CT-CT-TT-GT-TT-GC-TC-TT-TG-TT-TDesign primers
3438263TAAAGA-TAGAGA-TAGAGA-TAGAGADesign primers
3454877ACT-GGT-GGT-GCT-GCT-GCT-GGT-GGT-GTT-GGT-ACT-GCT-GCT-GGT-GCTDesign primers
3491825CAGACGCAG-GCAACGCAG-GCAACGCAG-GCAACGCAG-GCAACGCAG-GCAACGCAG-GCAACGCAG-GCAACGCAG-GCAACGCAG-GCAACGCAG-GCAACGCAG-GCAACGCAG-GCAACGCAG-GCAACGCAG-GCAACGCAG-GCAACGCAG-GCAACGCAG-GCAACGCAG-GCAACGCAG-GCAACGCAG-GCAACGCAG-GCAACGCAG-GCAACGCAG-GCAACGCAG-GCAACGCAG-GCAACGCAG-GCAACGCAG-GCAACGCAG-GCAACGCAG-GCAACGCAG-GCAACGCAG-GCAACGCAG-GCAACGCAG-GCAACGCAG-GCAACGCAG-GCAACGCAG-GCAACGCAG-GCAACGCAG-GCAACGCAG-GCAACGCAG-GCAACGCAG-GCAACGCAGDesign primers
3529607GCTTGTTCGGCTTGTTTGGCTTATTCGDesign primers
3662783GGTGTACTGAGTACTGAGTATTGAGTATTGAGTATTGAGTATTGAGTATTGAGTATTGAGTATDesign primers
3678674CAAAACAATCGCGCTCAGAACAGTCGCACTTCAAACAATCGTGCTDesign primers
3680010AACAGTGAAATCAAGAGTGAAATCGAGAGTGAAATCDesign primers
3688959CTAAAGCGATTTAGAGCGATTTAGAGCGATDesign primers
3708323CATTTGATTTCCTTTCAATTGATTTDesign primers
3721356GAAGATAGCGACACCGAAGAAAGCTATACCGAAGATAGCTAAGCCDesign primers
3746007CTAAGCACTAACTGTAAGCATTAACTGTAAGCACTAAATDesign primers
3758170CTAAAAA-ATAAAAA-ATAAAAA-ATAAAAA-ATAAAAADesign primers
3758206TAAACAA-TAAACAA-TAAACAA-TAAACAA-TAAACAA-TAAACAA-TAAACAA-TAAACAA-TAAACAADesign primers
3762584AAGGGAT-AAGAGAT-AAGAGAT-AAGAGAT-AAGGGATDesign primers
3773719CACTCACGTTCAATCAATAACGTTCAATCACTCACTTTCAATDesign primers
3815588GACTCA-GAGTCA-TAGTCA-TAGTCA-TAGTCA-TAGTCA-TAGTCA-TAGTCA-TAGTCADesign primers
3823914TAACACAGCGCCAACATAGCGCCAACATAGCGCDesign primers
3874938ATAAAACCGTCAAAAACCGTTTAAAACCTTDesign primers
3880097AATAATATTAATAAAAATATTAATDesign primers
3893946TCATTCCAACAAGTCGTTTCAACAAGTCATTTCAACAACDesign primers
3934610AGCGTCTTCAACATGAGTGCCTTTAACATGAGTGCCTTTAACATGDesign primers
3959493AAGTGCTTAGATTTAGAGGCGCTTAGATTTAGAAGCACTTAAATTTAGDesign primers
3960818AACTGATATTAGAACGACTAATATTAGAACTACTAATGTTAGAACDesign primers
3990390CTAAAACCGT-CTAAAACCGT-TTAAAACCTTDesign primers
4008962TTTATTTCAACAACTCATTTCAACAAGTCATTTCAACAADesign primers
4035784ACAACTCAATAAAACAAACTCAAAAACTCAGTAAAACAGACTAAGTAACTCAATAAAACAAATTCADesign primers
4045843GGTACAGTTTGCGACGATACTGTTTGCAACGGTACTCTTTGCGACDesign primers
4087644ATACATTAGGCCTATATATTAGGGCTATACATTAACCCTDesign primers
4089139AGATTCTTAAGCAC-GAATTCTTAAGCAC-GAATTCTTAAGCACDesign primers
4106420CAATTTCAGTTTCAAATTCAGTTTDesign primers
4117587CAACAGCATT-AAACAGCATT-AAACAGCAGTDesign primers
4120963TATTGCA-TTTAGCA-TTTAGCA-TTTAGCA-TTTAGCA-TTTAGCADesign primers
4122013CTAATAAAAACTGAAAAAAACAACTAAAAADesign primers
4166439TAATTGGCGAAACAATTGGCTAAATAATTGGTGAAADesign primers
4177748GTGTTAGTTAAGTGCTATTTAAGCGTTAGTTAADesign primers
4215546CAGTTAT-CTGTTAT-CTGTTAT-CTGTTAT-CTGTTATDesign primers
4276008TTAATGC-TAGATGC-TAGATGC-TAGATGC-TAAATGC-TAAATGC-TAAATGC-TAAATGC-TAAATGC-TAAATGC-TAAATGC-TAAATGC-TAAATGC-TAAATGC-TAAATGC-TAAATGC-TAAATGC-TAAATGC-TAAATGC-TAAATGC-TAAATGC-TAAATGC-TAAATGC-TAAATGC-TAAATGC-TAAATGC-TAAATGC-TAAATGC-TAAATGC-TAAATGC-TAAATGC-TAAATGC-TAAATGC-TAAATGC-TAAATGC-TAAATGC-TAAATGC-TAAATGC-TAAATGC-TAAATGCDesign primers
4287227TCACTAAGTCACTAATTCATTAAGDesign primers
4344687ACAACAATCTGAGCAAAAACAAATTGAGCAAAAACAAATTGAGCADesign primers
4376691TTAAGCATTAAACTTAAGCACTAAACCTAAGTATTAAACDesign primers
4523144TGGGGCATTGATATTTGTCGCATTGATGTTTGGCACATGGATATTDesign primers
4556839GAAAG-GTAAG-GTAAG-GAAAG-GAAAGDesign primers
4570947ATAATGG-ATAACGG-ATAACGG-ATAACGGDesign primers
4635415CTGCTACTTAATAGACAGCTACTTAATTGGAAGCGACTTAATAGADesign primers
4714709ATTTTCTAATGTACACATTTCTAATGTAAACCTTTCTAATGTACADesign primers
4805167CATTTGGATTCCATTGGGAGTCCTTTTGGAGTCDesign primers
4838390GACTTA-TGCTTA-TGCTTA-TGCTTA-TGCTTA-TGCTTADesign primers
4841745CAAAAAGGATAGTAAAAAGGATTGTAAAAAGGATTGDesign primers
5142046CGCCGCCAGTGCCATTTCCACCGCCTGTGCCAGTTCCACCACCAGTGCCAGTTCDesign primers
5142101ACCACCTGTACCTGTTCC-ACCACCTGTACCTGTTCC-ACCACCTGTACCTGTTCC-ACCGCCTGTGCCAGTTCCDesign primers
5142174CCGCCTGTGCCAGTTCCACCACCTGTGCCAGTTCCACCACCTGTGCCAGTTCCACCACCTGTGCCAGTTCCGCCGCCTGTGCCTGTTCCGDesign primers

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