Microsatellites /Tandem Repeats database

Genome: Helicobacter pylori BM012A

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
0AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATTDesign primers
5092TTTCTTAAA-GTTCTTAAA-GTTCTTAAADesign primers
6635TAT-TAG-TAG-TAG-TAG-TAG-TAG-TAG-TAG-TAGDesign primers
7670CCCATACCACCCATGCCACCCATATCADesign primers
82216AACCAAAAAAAGCGAAAATGAAAAAAGCGAAGACAAAAAAAGCGAAAACAAAGAAAACGADesign primers
91532GCGGAAG-AATAAAG-AATAAAG-AATAAAG-AATAAAG-AATAAAG-AATAAAG-AATAAAG-AATAAAG-AATAAAG-AATAAAG-AATAAAG-AATAAAG-AATAAAG-AATAAAG-AATAAAG-AATAAAG-AATAAAG-AATAAAG-AATAAAG-AATAAAG-AATAAAG-AATAAAG-AATAAAG-AATAAAG-AATAAAG-AATAAAG-AATAAAG-AATAAAG-AATAAAG-AATAAAG-AATAAAG-AATAAAG-AATAAAG-AATAAAG-AATAAAG-AATAAAG-AATAAAG-AATAAAGDesign primers
96478ATGGCATT-CAATCATT-CAATCATT-CAATCATT-CAATCATT-CAATCATT-CAATCATT-CAATCATT-CAATCATT-CAATCATT-CAATCATT-CAATCATT-CAATCATT-CAATCATT-CAATCATTDesign primers
102221TTTTTAATCTCTTTTTTATTTCTTTTCATTCTCDesign primers
161867AACAAAAGACAGAACAAGAAA-AACAAAAGACAGAACAAGAAA-AACAAAAGACAGAACAAGAAA-AACAAAAGACAGAACAAGAAA-AACAAAAGACAGAACAAGAACDesign primers
170176ATTTAATCTTCATTTAATATCCGTTTAATCTTTDesign primers
212417AGATGAAGAAGAATATGAAGATGADesign primers
214716AAACCTATAAAATCCTATAAAGAGCTATAADesign primers
226459AAACCTATAAAATCCTATAAAGAGCTATAADesign primers
235262CA-AT-AG-GG-CG-TG-AA-AG-AG-GG-CG-TG-AA-AG-AG-GG-CG-TGDesign primers
240570TTG-TTG-GTT-TTG-TTG-TTG-TGC-TTT-TTG-TTG-TTG-TTG-TTG-TTG-TTGDesign primers
241887TATGAAAAC-AATGAAAAC-AATGAAAACDesign primers
254290AAAAAGCTAAGAAGCTAAAAAGCGDesign primers
264153TTCTTCTTTAGGCTCTTCTTTTTTAACCTCTTCAACTTTAGGCTCDesign primers
264217GGTTCAGGTTTTGGTTCAGGCTTAGGTTTGGGTTTTGGTTCAGGCTTAGGTTTGGGTTTTDesign primers
276061TTTAGCTTCTTTGGCTTCTTTAGTTTCDesign primers
280956AATATTAA-ATACATAA-ATACATAA-ATATATAA-ATACATAA-ATACATAA-ATACATAA-ATACATAA-ATACATAADesign primers
282203TAAAAATCTCTAAAAAGCCCTAAAAATAGCDesign primers
330172TTGTTTGGCTAATTCTTTAGCTAATTGTTCGGCTAGDesign primers
341984GTCCCCTTTA-ATCTTATTTA-ATCTTATTTA-ATCTTATTTA-ATCTTATTTA-ATCTTATTTADesign primers
353187AAACCTATAAAATCCTATAAAGAGCTATAADesign primers
374025AAACCTATAAAATCCTATAAAGAGCTATAADesign primers
396101TATAGAGTTAAAAA-AAGAGAGTTAAAAA-AAGAGAGTTAAAAA-AAGAGAGTTAAAAA-AAGAGAGTTAAAAADesign primers
410277ATGGGGGATATGGGCGATATGGGGAATDesign primers
418912TTGCTTTCTTTAGTTTTATTTTCTTTAATTTTGCTCTCTTTGGCTDesign primers
418960TTGTTTTCTTTAGTTTTATTTTCTTDesign primers
496821CTTCCTCTTTAGCCTCCTTTTTAGCTTTCTCTTTAGDesign primers
516671TTTTTTTGATTTTTTTTATTTTTTTTADesign primers
542169TTTTCTTTTGCATGC-TTTTCTTTTGCATGC-TTTCCTTTTATATGCDesign primers
559134AA-TG-AG-AG-CA-TG-AG-AG-AA-AG-AG-AGDesign primers
588124AAAAGGAAAAGCAAAAAGAAAAGGDesign primers
613240CCCTAATATCCCCAATATCCCTAATATDesign primers
641299GATGGGGGCGATGGAGGCGATGGGGGCDesign primers
646144TTTTAACCTCTTTAACCCTCTTTTAATTTCDesign primers
653587AAAAAAGAGAATTTAAAAAAAAGAATTCAAAAAAAAGAGTTTDesign primers
656016TACATTGGAATACATTTGCATTAGAATGCATTTGCATTGGAATGTATTDesign primers
660077TCTTGTGGGTTTTCTACA-TCTTGCGGTATTTCTACA-TCTTGCGGTATTTCTACA-TCTTGCGGTATTTCTACA-TCTTGCGGTATTTCTACADesign primers
677057AACCAAACCTAAACAAACAAAACAADesign primers
684709TATGAAACCTATTCCATAAAACCTATTCAATAAAACCTATTCDesign primers
762924GGTTTTTGTTCAATGGGTTTCTGTTCAATCGGCTTTTGTTCAGAGDesign primers
762971TTTCTGTTCAAGCGGTTTTTGTTCAATGGGTTTCTGTTCAATCGGDesign primers
765246CTTTAGCGTCCTCTTTAGCACCCTCTTTAGCGTTTTDesign primers
765425GCGTTTGCGTTGGCGCTTGCGTTGDesign primers
771860TCCAAATACATTCCAATGCAAATGCATTCTAATGCAAATGTATTCCAADesign primers
832850GCTTTTTTTAGCTTCTTCTAACTTTTTTTTDesign primers
836231TC-TT-TT-CT-TT-TT-TC-TC-TT-TT-AT-CT-TT-TTDesign primers
888585TTTATGCTCTACTTTTTGTTCTACTTTCTGCTCTACDesign primers
888733GGCTTAGGTTTAGGCTCAGGCTTAGGCTTTDesign primers
940258CTCGTGGCAAAATACGATGAA-CTCACAGGAAAATACGATGAA-CTCACAGGAAAATACGATGAA-CTCACAGGAAAATACGATGAA-CTCACAGGAAAATACGATGAA-CTCACAGGAAAATACGATGAA-CTCACAGGAAAATACGATGAA-CTCACAGGAAAATACGATGAADesign primers
943181ATTTGCGCGATTTTTTGGGCGATTTTTTGCGCGCTTDesign primers
959352CCATAAGGCATGAAACCATAGGGCATGTAATAATAAGGCATGTAATAATAAGGCATGTAADesign primers
976694CTCAAAGAAATGAGGCTCCAAAAAATGAAGTTCAAAGAAATGAGADesign primers
983244AAGAGTTAAAGAATAAAGAACTGAAGAATAAAGAATTGAAAAATADesign primers
996526TTTTGAAACATTTTTGAAAGTTTTTTGAAAATTDesign primers
1056299AG-CG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AGDesign primers
1090710AAAATTCTCAAAAATCTCAAGATTCTCDesign primers
1098904AACAAAAACAACAAAAAAAACAATDesign primers
1099743TGCTTCTTTTTTAAG-AATTTCTTTTTTAAG-ATTTTCTTTTTTAAG-AATTTCTTTTTTAAG-AATTTCTTTTTTAAG-AATTTCTTTTTTAAG-AATTTCTTTTTTAAG-AATTTCTTTTTTAAGDesign primers
1121227GCTTTTAATTCTGTGTTTAATTCTGTGTTTAATTCTDesign primers
1132939GAATATTTTTAGGAATATTTTCAATGATATTTTTAGGAATGTTTTTAADesign primers
1174069AAACCTATAAAATCCTATAAAGAGCTATAADesign primers
1229692AAACCTATAAAATCCTATAAAGAGCTATAADesign primers
1284073TCATGTTTTCTTCAGTCATATTCTCTTGAGCCGTATTTTCTTCAGDesign primers
1288088CCCAAAGACAAC-GAAAATGACAAC-GAAAATGACAAC-GAAAATGACAAC-GAAAATGACAAC-GAAAATGACAACDesign primers
1298096GCAAGAAGTGGTGTGA-TATAGAAGTGGTGTGA-TATAGAAGTGGTGTGA-TATAGAAGTGGTGTGA-TATAGAAGTGGTGTGADesign primers
1360612ATGGCATT-CAATCATT-CAATCATT-CAATCATT-CAATCATT-CAATCATT-CAATCATT-CAATCATT-CAATCATT-CAATCATT-CAATCATT-CAATCATTDesign primers
1413095TAATCGGCTCTCAAATCATCA-TAATTAACCCTCAAATCATCA-TAATTAACCCTCAAATCATCA-TAATTAACCCTCAAATCATCA-TAATTAACCCTCAAATCATCA-TAATTAACCCTCAAATCATCA-TAATTAACCCTCAAATCATCADesign primers
1425357CG-AT-AT-AT-AT-AT-AT-AT-AT-AT-AT-AT-AT-AT-AT-AT-AT-AT-AT-ATDesign primers
1438926TTTTCTAAATTTTCTAAGGTTTCTAAADesign primers
1471225TCTACTTTTTCAACTGCTTTTTCATCTTTTTTTTCADesign primers
1497402AACAAA-AACCCA-AACCCA-AACCCA-AACCAA-AACCCADesign primers
1551258ATGCCGCTACCATAACTTGCGCTACCATAACTCGCGCTACCATAADesign primers
1575208GCATTTCAATGTATTTTAATGCATTTAAATDesign primers
1618158TTTTTTTTATTTTGTTATTTTTGTTDesign primers

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