Microsatellites /Tandem Repeats database

Genome: Listeria monocytogenes SLCC2755

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
94552AAACAGCTAAAGAAACAGCAAATGAAACAACAAAAGDesign primers
162615TAGTACCGCCAACACCAGTACCACCAACACCAGTGCCACCAACACDesign primers
173058GGGTCAACTGGATCAACCGGATTTACTGGATCAACCGGGTCAACTGGATTGACCDesign primers
353490TTGCTTGTTTTG-TTGCTTGTTTTG-TTGCTGTTTTTGDesign primers
545803AGAAAAAGCAGATAAAGCAGAAAAAACDesign primers
593248AGATCCGGATCCAGTAAATCCAGATCCAGTTGATCCAGACCCAGTDesign primers
623065TTTGTATTAGTATTGGTATTTTTADesign primers
672507GTAACAAAAAATACACCAAAAGATACACCAAAAAATACACCAAAAAATACACCAAAAGATACACCAAAAGATDesign primers
721652TT-TT-TT-CT-TT-TT-TT-GT-AT-TT-TT-TT-GT-GT-TT-TT-CT-TT-TT-CTDesign primers
793690AA-AA-AA-TA-AA-AA-AA-GA-AA-TA-AA-TA-ADesign primers
882350AATTTGTAA-AACCTATAA-AACCTATAA-AACCTATAA-AACCTATAA-AACCTATAA-AACCTATAA-AACCTATAADesign primers
958071AGAACAAAAACAACAACAAGAAAADesign primers
989426AAAAAGAAGAAGAAAACGAAACAGDesign primers
1125411ATAAAAGAAATAAAACAAATACAAGAADesign primers
1128908TGCACATGTACATGTACATGCGCADesign primers
1152549ACCCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTADesign primers
1152640ATCCGGTAGACCCAGTAGACCCGGTAGACCCAGTAGACCCGGTAGACCCAGTCADesign primers
1302043CCAACGCCAAATCCAACACCAGATCCGACGCCAAATDesign primers
1388643TTTTTTTTATTTTTCTTTCTTTTGTDesign primers
1624752ATTAGCAATAGCATTATCATTATCDesign primers
1629915GCTGCTTCTTTTGCTGCTTCTTTCGCTGCTTTATTTDesign primers
1908223CATCGG-CATCGG-CATCCG-CATCAG-CATCCG-CATCAG-CATCCG-CATCAG-CATCCG-CATCAG-CGTCGG-CATCCG-CATCAG-CGTCGG-CATCAGDesign primers
1908667CGTCGG-CATCGG-CATCCG-CATCGG-CATCGG-CGTCAG-CATCCG-CATCCG-CATCGG-CATCGG-CGTCGG-CATCAG-CGTCAG-CATCCG-CATCGG-CGTCGG-CATCGG-CATCAG-CGTCAG-CATCGGDesign primers
1908788GTCAGCATCCGCATCGGC-GTCAGCATCCGCATCGGC-GTCAGCATCCGCATCCGCDesign primers
1908843TCCGCATCAGCGTCAGCGTCGGCATCAGCGTCGGCATCCGCATCAGCATCAGCADesign primers
1908898CAGCGTCCGCATCAGCGTCGGCATCCGCATCCGCATCAGCGTCGGCGTDesign primers
1908947AGCATCGGCGTCAGCGTCAGCGTCAGCATCAGCGTCAGCATCCGCATCDesign primers
1908996GCGTCCGCATCGGCGTCCGCATCAGCGTCCGCATCGDesign primers
1909033CGTCAG-CGTCAG-CGTCAG-CGTCAGDesign primers
1909065TCAGCATCGGCGTCAGCATCCGCATCCGCATCAGCGTCCGCATCAGCGTCGGCATCAGCGTCAGCATCCGCATCAGCGTCGGCGTCAGCATCCGCADesign primers
1909162CGGCGTCAGCAT-CGGCGTCAGCAT-CGGCGTCCGCATDesign primers
1909199CGCATCGGCGTCAGCATCGGCGTCCGCATCCGCATCDesign primers
1909260GCATCAGCATAAGCAACAGCATCADesign primers
1909367CGCATCGGCATCAGCATCCGCATCDesign primers
1909410GCATCGGCATCCGCATCAGCATCAGCGTCAGCATCAGCGTCGGCATCGGCATCADesign primers
1909465CGTCAGCATCAGCATCGGCATCAGCATCCGCATCGGCGTCAGCATCGGCGTCAGCATCAGCGTCGGCATCGGCATCAGCGTCAGCATCAGCGTCGGCATCCGCATCAGCGTCGGCATCCGCATCCGDesign primers
1909592ATCAGCGTCGGCATCCGCATCAGCGTCGGCATCAGCGTCAGCGTCGGCATCCGCATCAGCGTCAGCGTCAGCATCAGCGTCGGCGTCGGCDesign primers
1909683TCGGCATCCGCATCAGCGTCAGCATCCGCATCCGCATCAGCGTCGGCATCCGCATCAGCGTCAGCGTCAGCATCCGCATCCGCATCAGCGTCAGCATCCGCATCCGCATCGGCGTCGGCADesign primers
1909812GCATCA-GCATCA-GCGTCA-GCGTCADesign primers
2054315TCAGCTTTTTCAGCAGCAGCTTTCTCGGCAGCAGCTTTGTCAGCCDesign primers
2139715TTTGTTTAATGTTTCTTCAATGTTTGTAAAATGDesign primers
2420895TTGCTTTTCCTTCTGCTTTTGCTTDesign primers
2428583CTTTTTCATCCTTTTTCCCCCTTTTTTATGDesign primers
2487400CTCTTTTACTATTTTACTTTTTTADesign primers
2750351TTTGCTTTTGATTTGTTTTTTATTTACTTTTAADesign primers
2776901CAACAACACCAATAACAAAAACAADesign primers

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