Microsatellites /Tandem Repeats database

Genome: Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
9569TAATTTTTTTAAATTTTTTAAGTTTTTDesign primers
13621ATTTTTATTATTATTATTATTTTCDesign primers
26156ATATTTCTTTAATATTTTTTTTATTTTTCTCTADesign primers
27584TTTTTTTTTTATTTGTTTTTTTTADesign primers
41625TTTTTCTATTTCTTTTTTTTTGTCTTTTTGDesign primers
60554CTGCATCTTCATCTGTATCTGTATDesign primers
62688ATATAATTTTATAATTATAGAATTDesign primers
72006ATTTTTATTTATATTATTATTTTTDesign primers
82501ATAAA-ATAAA-AAAAA-AAAAA-ATAGADesign primers
121755AAAAAGAACAAGAAAAAAAAAAATDesign primers
121820AAAAAAAATCATATAAAATCAAAAATAAACDesign primers
161809CCACCAAAAATATCACCAAAAACATCCCCAAAAATADesign primers
172985TT-TT-TT-TT-AT-TT-TT-CT-TT-TT-AT-TT-TDesign primers
181886TAT-TAT-TAT-TTT-TTT-TAT-TAT-TATDesign primers
200934TTTTTTTATTTTTTCTATTTTTTCTDesign primers
211441TTTTTTTATAATTTTTTCTATTTCTTTATGDesign primers
215309AAATATAATTAAATATTTTTTTATATAATTDesign primers
232737TTTTTTATTTCTTTTTTTATTATTTTTTTADesign primers
238119TTTATTATATTTTTTTTTAGTTTTTDesign primers
285458TT-TT-AT-TT-TT-TG-AT-TT-TT-CT-AT-TTDesign primers
287477AAATATTTTTTATTATTTTTATAAATTTTTDesign primers
294990AAACTAAAAAAGAAACAAAAGAAGAAAATAAAATAGDesign primers
309722AA-AA-AA-CA-AA-AA-GA-AA-AA-AA-TA-AA-ADesign primers
314161TTATTATATTAATATATTATTATADesign primers
337866AATAATAAAAATAATAATAATAAGDesign primers
353335ATTATGAATATGATTATGATTATGDesign primers
358426ATAAATTAAAATAACATAAAAAAAADesign primers
365928ATAGAAAAAAAAAAAAAAAAATACAAACAADesign primers
367374TATAGAATAAATATTCTATAATAAATATTATATAATAAATATTATATAATAAATAADesign primers
383517AATAAATAAAAATTAAAAAAATTAATTAAADesign primers
384953ATAATAAATATTATTATAAATATTATTAGAAATATTDesign primers
390842TTATT-ATATT-ATATT-TTATT-TTATTDesign primers
411359CGCTCGACC-TGCTCGACC-TGCTCGACCDesign primers
419044CT-CT-AT-TT-TT-TC-TA-TA-TT-TT-TT-AT-GT-AT-TT-TT-TDesign primers
426939ATTTTTATAAAATTTAATAATTTTTTACAADesign primers
429701AGATGGTGGAAATGGTGGAGATGGTGGDesign primers
436051ATA-AAA-AAA-AAA-TAT-TAA-AAA-AAG-AAG-AAA-AAADesign primers
436102AAAAAAAAATAAAATTAAAAAATAADesign primers
442369AA-AA-GA-AA-AA-CA-AG-AA-AA-AA-TA-GA-AA-ADesign primers
446457ATCAAATT-ATCAAATT-ATCAAAATDesign primers
470352AA-AA-AA-AA-AT-TA-AA-AA-AA-AT-AT-AA-ADesign primers
483793AAATTTATTAAAATCAATTATAAATTATTADesign primers
495166ATAAAAAAAAATAAGATAATATAATDesign primers
503008AAAAAAATAAATAAAAAAACAACAADesign primers
513185GT-TT-TA-TT-TT-GT-TT-TA-AT-AT-AT-TT-TT-TT-TTDesign primers
520172AGAAAAATAAAAAAATAAAAAAATDesign primers
526915AAAAAACAAATAAAACAAAAAAAATDesign primers
527200AAAATTAAAAAATTTAAAAATAAADesign primers
543987AAAATATTAAAAAAATATGAAAAAATTAGTAAADesign primers
561602TTATTAATATATTAATTTATTAAADesign primers
568219TTTTTTAAAAAATTTTTAAATATTTTTTTAAAADesign primers
608847TTTAAATAATTATAAATATTTTGAGATAATDesign primers
610723TATGAAAAAATATGAAAATCAATAAAAAAADesign primers
612928TAA-TAA-AAA-AAA-AAA-AAA-AAA-AAA-AAA-AAADesign primers
634223TTTTATTGTTTTATTATTTTTTTGDesign primers
640643TTTTTTGATATTTTCTTATATTTTTAGAAADesign primers

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