Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Bifidobacterium animalis subsp. lactis CNCM I-2494

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
931	CGGTGGCGCTGGCAGTGGCGGAGG	Design primers
18003	GGCAGGTGACAATGCTCAGTCTGGTGACAATGCTCAGTCTGGTGACAATGCCCA	Design primers
18761	AAGGCCATGGCCAAGGTCAAGGGC	Design primers
110109	CATGACTATAGCGTGATTATAGCGTGATTATAG	Design primers
110208	CGCAGAGT-TGCAGAGT-TGCAGAGT	Design primers
110233	GCGGATTT-GCGGATTT-GCGGATTT	Design primers
111138	ATGACGATGAAGCTGACGATGGCG	Design primers
151890	GCGGCTCGTCGGGCGGCGCGTCCGGCGGATCGTCGA	Design primers
179942	CGCAGATAG-GGCAGATAG-GGCAGATAG	Design primers
198827	GCGGAGGCA-ACGGAGGCA-ACGGAGGCA-ACGGAGGCA	Design primers
216721	TCGCCGTCCCCGTCGCCTTCACCG	Design primers
241276	ACTGTGCAGACCGCTGCGCAGACCACTGTGCACCCC	Design primers
254592	ACTGTTGTTGCTGCCGTTGTTGCTGCCGTTGTTGCT	Design primers
254629	CCGTTGTTGCCG-CCGTTGTTGCCG-CTGGTGTTGCCG	Design primers
258409	TTCTCCTTCTTCTTCTTCTTCTCCTCCTCC	Design primers
258492	TTTTTACGCAGACG-GATTTACGCAGACG-GATTTACGCAGACG	Design primers
263468	GTGACATCCCGTAAGCATTGACGACATCCCGTAAGAGTTGGTGACATCCCGTACGCACTG	Design primers
263591	CCTGTTACGGGCCAGCTTGTTACGGGCCAGCCTGCTGCGGGCTAG	Design primers
273933	GCCGAGTCCGAGGCCGAGGCGGAG	Design primers
274167	AATCCCTTACGGGATGTCACCAACTCTTACGGGATGTCGCCATCCATTACGGGATGTCAG	Design primers
278148	CTTCAACTCTTACGGGATGTCGCAATCTCTTACGGGATGTCGCAATCTCTTACGGGATGT	Design primers
278397	GGGATGATGACATCCCGTAAGGGTTGGTGGCATCCTGTAAGGGTTGATGGCCTCCCGTAG	Design primers
281189	ACATCCCGTAACAGATTAGGGTAGCCCGTAACAGATTAGGGTAGCCCGTAACAGATTTGG	Design primers
284594	AG-CG-CG-CG-AG-GG-CG-TG-CG-AG-GG-CG-CG-CG-GG	Design primers
286806	TGACATCCCGTAACGGATAAGGACATCCCGTAAGAGATTATGACATCCCGTAACAGAAAA	Design primers
296167	GCGCGCTAATGCTTACGGGATGTCGTTAATGCTTACGGGATGTCGTTAATGCTTACGGGA	Design primers
299373	GAATCCGAATGCCAATCCGAACCC	Design primers
300064	GAGGACATCGACGAGGATATCGACAACGACATCGAC	Design primers
306866	CGCGGATCTCGTGGATCTCGCGGATCTCCCGGATCT	Design primers
310193	GCAGAAGGAGAAGCAGAAGAAGAA	Design primers
316143	GTGCAGTTCGGCGCAGTTCGATGTAGTTCGACGCAGTTCG	Design primers
325067	GTGCAGTTCGGCGCAGTTCGATGTAGTTCGACGCAGTTCG	Design primers
332030	GAGCGCGGTGGTTGCGCCAG-GGTGCCGGTGGTTGCGCCAG-GGTGCCGGTGGTTGCGCCAG-GGTGCCGGTGGTTGCGCCAG	Design primers
333817	AAGGGGTAGAGGGGGGTAGAGAGGGGTAGA	Design primers
336352	GAAGAAAGG-CAAGAAAGG-CAAGAAAGG	Design primers
341699	GGAATCTCAAGGAATTCCAAGGAATATCAAGGAATATCAA	Design primers
378644	CCGAGGCCGCGGCCGAAGCCGAGG	Design primers
390030	TCGACCTCGACATCCACCTCGACA	Design primers
496775	GGTCGATGTGGTCGACGTCGTCGATGT	Design primers
509392	GATTAGGTGGATTGGGTGGATTGGGTG	Design primers
511270	GCTCGTGCGCGTGCTCATGGTCGT	Design primers
533320	CGACACCGT-GGACACCGT-GGACACCGT	Design primers
542639	AGAGGTCGCGCACAGATCGCGCACAGATCGCGC	Design primers
627071	CGCAGATT-GGCAGATT-GGCAGATT	Design primers
770170	CGTCGGAATCGCCGTCGCAGTCGCCGTCGCAGTCGC	Design primers
833361	CCACAATGGCCGCAATGGCCACAAGGG	Design primers
896362	GGATGCTGCGGTTGCTGCGGATGCAGC	Design primers
1092181	ACCGCCACCGTCACCGACACCGTC	Design primers
1328832	GCATCACTTGGACATCACCTGGACATCACTTGG	Design primers
1333889	CGATGTCATCGTCGGCGTCATCGTCGGCGTCATCGT	Design primers
1345744	ATTACGCAGAGGCGGAGAGATTACACAGCGGCGGGGAGATTACGCATAGCCGGAGAG	Design primers
1349902	CGATATTTCAATATTTCAATATTT	Design primers
1402366	CTCTTACC-CTCTTACC-CTCTTCCC	Design primers
1558436	TCGTCGGCATCGTTGGCATCGGCGGCA	Design primers
1678346	TGGATTCAGTGGATTCATTGGATTCTG	Design primers
1704231	TCTGCCATCCTCAGCTATCCTCTGCCACCT	Design primers
1723574	GTTGATGCAGCTGATGCAGCTGATGCA	Design primers
1736924	GTCTTCCGTATCTTCCGTGTCTTCCGA	Design primers
1743485	CAGTGCAGATCAGCGCAGCTCAGTGCAGCT	Design primers
1783470	GCGGCGGTGGCGGAGGCGGCGCCGGCGACG	Design primers
1930354	GATGCCAACGATGCCGACGATGCCAGC	Design primers
1932741	AGCATCCCCCCGAGCATGCCGCCGAGCTTCCCGCCG	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

931

CGGTGGCGCTGGCAGTGGCGGAGG