Microsatellites /Tandem Repeats database

Genome: Acetobacterium woodii DSM 1030

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
412AAAATATCAAATTATCAAAATAACDesign primers
104664ACAATATAAAACATGATAAAACAATGTAAADesign primers
168557AATAAATTAAAATAAAATGAAATTADesign primers
173370TTTGATTTGCTTTTATTGGATGTGADesign primers
260196GAAGAACCAGAGCTTGATGAATCAGAACTTGATGAATCAGAACTTDesign primers
260256GATGAACCGGAACTCGATGAATCAGAACCCGAAGAACCGGAACTTGATGAATCAGAACTCGATGAACCGGAACTGDesign primers
260340GAACTTGATGAACCGGAACCGGATGAACTGGAATTAGATGAACCGDesign primers
292826CTAAAAAAATAAAAAACGAAAAAADesign primers
299853AA-AA-AA-GA-AA-AC-AA-AA-GA-AA-AA-TA-ADesign primers
363651TT-TT-TT-TT-TA-TT-TT-TT-AT-TT-TT-TG-TT-TC-TTDesign primers
366983CGGTTCCGGTAGCGGCTCTGGTAGTGGTTCCGGCAGDesign primers
381959GATGAAGATAAAGATGGAGATGGAGAGGAADesign primers
437302TTTTAAAATTTGAAAATTTTACAADesign primers
554917ATCAAGCTACCC-CCCAAGCTACCC-CCCAAGCTACCC-CCCAAGCTACCCDesign primers
740569TTAAATTAATAAATTATTAAATGADesign primers
761002GA-GG-AA-AA-AA-AG-AC-GG-AA-AA-AA-CA-GA-AA-AA-AA-ADesign primers
801540TATGTTTTATAATGTTTTGTTATGTTTCAGDesign primers
805057AA-AA-TA-AA-AC-AA-AA-AA-AT-AT-AA-AA-ADesign primers
831049ACGACCGCAGTCGAAACACCGGCAGTCGAAACACCGGCAGTCGAADesign primers
831095CATCGACAGTCGAAA-CACCGGCAGTTGAAA-CACCGGCAGTTGAAA-CACCGGCAGTTGAAADesign primers
895459AATGAAAATAAAAATGCAAATTAADesign primers
1070350ATCGAATAATATCGCATAAGATCAAAAAATDesign primers
1198417AGAATCAGAAGAAGAACAAGAAGAACAAGAAGAACAAGAAGAACAAGAAGAACADesign primers
1248155AGGAACATGCTCACGAACATGCGCACAAACATGCTCDesign primers
1272624CTATTTTTGTCGCACTTTTTGTCGCACTTTTTGTCGDesign primers
1279046TAAATAATACTGATAATAATAATACTAATATAAGTAATACTGATADesign primers
1313493ATGAATAGAAAGGACTAGAAATGATTAAAADesign primers
1343560TT-TT-TT-TA-TT-TT-TT-GT-TT-TA-TC-TT-TDesign primers
1353542TT-TT-TT-TA-TT-TT-TT-AT-TT-TT-TC-TT-TDesign primers
1435098TGATATCGGGAGCAGTATCGGTATCGGGAGCAGTAC-CGGTATCGGGAGCAATATCGGTATCGGGAGCAGTAC-CGGTATCGGGAGCAATATCGGTATCGGGAGCAATAT-CGGTATCGGGAGCAATATDesign primers
1583997TT-AT-TT-TT-AT-GT-TT-AT-GT-TT-AT-ATDesign primers
1674083ACGAAAAAAATA-TAGAAAAAAATA-TAGAAAAAAATADesign primers
1674127GATGTTGAAAAGGACGTTGAAAAAGATATCGAAAAGDesign primers
1708529ACAGTATAAAACATGATAAAACATGATAAADesign primers
1712537ATAAAAAATAATATAAAAAATTAAAAAATADesign primers
1762716AGATTTAAAAGATTTCAAAGATGTAAADesign primers
1969563CGCCTC-CGCCCC-CGCCCC-CGCCACDesign primers
2051631CAAATAGG-CAAATAGG-TAAATAGGDesign primers
2288993AAATGATTAAATTATTAAATGATTDesign primers
2305547AACAAAACCAAAAACGACACCAAAAAAACAACCAAADesign primers
2326717TAATTGATATGAATTGATAATAAATTATATDesign primers
2366373TCAATTTCTTTCCATTTTTTTTCATTTCTTDesign primers
2490505TACTGTTACTGGTTGTGTTACTGGTTGTGTTACTGGDesign primers
2498474ATAATCATCATCATAATAATACTCDesign primers
2559240CTTCGATACTTTGATACTTCGATADesign primers
2587892CGTTGGTGTTGCCGGATCTGTTGGTGTTGTTGGATCTGTTGGTGTTGTTGGATCDesign primers
2587947GTTGGCGTCGTTGGATCCGTTGGTGTTGTTGGATCCGTTGGCGTCGTTGGATCCGTTGGCGTCGTTGGATCCDesign primers
2590080CTTTTTATTCCTTTTTTTTGCTTTTCACTCDesign primers
2642511ATTTTTGTTCATTTTGTTTCATTTCTTTTCDesign primers
2716956AATCCCGGTGAAAACCCCGGCGAAAATCCTGGTGAADesign primers
2881801TTCCATTTCTTTTTCGGTTTCTTTTAGCATTTCTTTDesign primers
2938296TTCCTGTTGAACTGG-TGCTTGTTGAACTGG-TGCTTGCTGAACTGG-AGCTTGTTGAACTGGDesign primers
3018441TTTAGCTTTTGCTTCGGCCTCTGCCTTAGCTTTCGCTTCTGCCGCTGCCTTGGCTTTTGCTTCGGCCTCTGCDesign primers
3018541GCTTTCGCTTCCGCTTCTGCTTTAGCTTTCGCTTCTGCTTTGGCTTTCGCTTCGDesign primers
3018604TTGGCTTTCGCTTCTGCTTTGGCTTTCGCTTCCGCTTCTGCCTTGGCTTTTGCTTCGGCTTCTGCCTTGGCTDesign primers
3018709GCTTTCGCTTCTGCTTCTGCCTTGGCTTTTGCTTCTGCTTTGGCTTCCGCTTCTDesign primers
3018925ACTTCTGCCTTGGCTTTTGCTTCGGCCTCTGCCTTGGCTTTCGCTTCGGCCGCTGCCTTAGCTTTTGCTTCGDesign primers
3019030TTAGCTTCGGCCTCTGCCTTGGCTTTTGCTTCTGCTTCTGCCTTAGCTTTCGCTTCGGCCTCTGCCTTGGCTDesign primers
3040545ATTAATTCCATTATTTCCATTTATTCCDesign primers
3042236ATAATAAAGTAATAAAACAATAAADesign primers
3257631AAAAGTGAAAGTAAAAGAAAAAATDesign primers
3389914TGTTCGTGT-TATTCGTGT-TATTCGTGT-TATTCGTGTDesign primers
3567850TCGTATGACACAAGTATGACACAGGTATGACACDesign primers
3594773TATCT-ATACT-AACCT-CACCT-ATACT-ACCCT-TACCT-AACCT-AACCTDesign primers
3598030TTTTCTATTCTCTTCTATTCTTCTCDesign primers
3609110TTGAGACATGG-GCGAGACATGG-GCGAGACATGGDesign primers
3740504ATAATCATAATTAAAATCATAATADesign primers
3798418CGGTTTTTAT-TTGTTTTTAT-TTGTTTTTATDesign primers
3973033TCGTATGACACAAGTATGACACAGGTATGACACDesign primers
4001741TCTATCTGTGTTTACATCTGTGTTTATATCTGTGTTDesign primers
4021343CTTTTATC-CTTTTATC-CTTTAATCDesign primers
4044657AAATTGTGGATTAATTGGGGATAACTTGTCGATDesign primers

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