Microsatellites /Tandem Repeats database

Genome: Hyphomicrobium denitrificans ATCC 51888

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
62845GACGGCGACGTCGATGGCGTCGGCDesign primers
95464ATCATGGTCATGATGATGATCCTGDesign primers
142686CAACCAGTGTC-CAACCAGTGTC-CAACCAGACTCDesign primers
563393GACCAAAATGGACAATAATGGTCCAAAGTGDesign primers
686395CTTTCGTCCCTTTTGTCCCTTTCATCCDesign primers
991409GCCTGTGCGCCAGACTGTGCGCCAGACGGTGCGCCADesign primers
1090249TAATCCCTATTCCCTCATCCCTAGTCCCDesign primers
1123603TGGCGGCGGCGGTGGTGGTGGCCGDesign primers
1267183ATGTGTAGCAAAGTGTGTAGCAAACCGTGTAGCAAADesign primers
1311399GGCTGGGGTCATCGTGGCTGGGGTCATCGCCGGTGGGGCCATCGTDesign primers
1592631CAACCAGTGTC-CAACCAGTGTC-CAACCAGACTCDesign primers
1712760TCGCTCATTCGTTCATTCGCTCAADesign primers
1712929GCGGGGCGATGCGGGCCGACGCGCGGCGCTDesign primers
1819166CCCTGAACCTGGCCCTAAAACTGGCCCCGAAACTGGDesign primers
1844186GCAGGA-GCGGGA-GCCGGA-GCCGGA-GCCGGADesign primers
1857171CGCCGTCGTCGTCGCGGTCGGCGTDesign primers
1865440GGCTTTA-GGTTTTA-GGTTTTA-GGTTTTADesign primers
1986812GGCGTGCTTGGAAGCATGCTTGGAAGCATGCTTGGADesign primers
2150992AGGGATTAGGGACTTGGGATTAGGGATGDesign primers
2240655CGAGCTCGCAAGCTCGCGCGCTCGDesign primers
2245083GGTCTCCC-CACTTCCC-CACTTCCC-CACTTCCC-CACTTCCC-CACTTCCC-CACTTCCC-CACTTCCC-CACTTCCC-CACTTCCC-CACTTCCC-CACTTCCC-CACTTCCC-CACTTCCC-CACTTCCC-CACTTCCC-CACTTCCC-CACTTCCC-CACTTCCC-CACTTCCC-CACTTCCC-CACTTCCC-CACTTCCC-CACTTCCC-CACTTCCC-CACTTCCC-CACTTCCCDesign primers
2263744GCCGCCGTGACCCCAACCGCCTCCGCCATGTCCCCAGCCGCCACCACCGTGGCCCCAACCACCDesign primers
2309857GGGTTCCGGTTCGAGTTCGGGCTCGGGTTCGGGTTCDesign primers
2342610ATGATCGTGATCATGACCGTGATCDesign primers
2597201CCATTCCGCCCATGCCGCCCATGCCGCDesign primers
2815825CCGTCGCCGCCGCCGTGGTCGTCGDesign primers
2852888CACAGG-CTCAGG-CTCAGG-CTCAGGDesign primers
2917865CGT-CGG-CGT-GGG-CGG-CGG-CGG-CGGDesign primers
2918007GGC-GGC-GGC-AGC-AGC-GGC-GGC-GGCDesign primers
3071492TTC-GTC-GTC-TTC-GTC-TTC-GTC-TTC-ATC-TTC-GTC-TTCDesign primers
3282109ATCGTGATCGCGGTCGTGATCGTTDesign primers
3308288ATTCAGTGCCTGGTTCAGTGTCTGGTTCAGTGTCTGDesign primers
3349113TCATGATCATCATCGTGATCATGGDesign primers
3393415CCCCAG-CCTCAG-CCTCAG-CCTCAGDesign primers
3469121GCTGGCGCTTGCGATGGCGCTGCCDesign primers
3538208CGCCGCCGCCGAAGCCGCCGCCGCDesign primers
3564687CGAGGACGAGCACGATGACGATGADesign primers
3613492CGATAACCGGGATAACCGCGATAACCGDesign primers
3619441ACTGGCGGCACCGTCACTGGCGTCATCGCCACTGGCGTCACAATCDesign primers

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