This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Percentaje of mismatches allowed within the tandem repeats:
0 |
0.1 |
0.2
Position | Sequence | |
98638 | CTCCGTTGCCGTCTTCTTTACCAGGTTTGTTGCCGTCTTCTTTACCAGGCTTGTTGCCGTCTTCTTTACCAG | Design primers |
98711 | CTTGTTGTTGTCTTCTTTACCAGGCTTGTTGCCGTCTTCTTTGCCAGGTTTGTTGTTGTCTTCTTTACCAGGCTTGTTGCCGTCTTCTTTACCAGGTTTTTTGTTGTCTTCTTTACCAGGCTTGTTGCCGTCTTCTTTGCCAGGTTTGTTGTTGTCTTCTTTACCAGGCTTGTTGCCGTCTTCTTTACCAGG | Design primers |
212249 | TAATCATTTTAACCATCATTTTAATTATCATTTTAA | Design primers |
282977 | TTAGTATTATTATTTGTATTATTA | Design primers |
314936 | AAAGAAATGAAAAAAGAAGATAAGA | Design primers |
424480 | GA-TA-AA-AA-TA-AA-TA-TA-AA-GA-AA-AA | Design primers |
428459 | GG-AA-AA-TA-GC-AA-AA-TA-GA-AA-AA-TA | Design primers |
432189 | AATAATAAAAAATAATGCAACATAATAATA | Design primers |
443299 | AA-CA-TA-AG-CA-TA-AA-TA-TA-AA-GA-TA | Design primers |
583475 | GACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGTGACTCAGACTCAGATAGCGACTCAGACTCA | Design primers |
583553 | GACTCAGACAGCGACTCAGACTCAGATAGTGATTCAGATTCGGACAGCGACTCAGATTCAGACAGCGAATCAGATTCGGATAGCGACTCAGACTCAGATAGCGACTCA | Design primers |
583662 | ACAGCGACTCAGATTCAGACAGTGACTCAGACTCAGACAGCGACTCAGATTCAGACAGCGATTCAGATTCGGATAGCGACTCAGATTCAG | Design primers |
583787 | GACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCAGACAGCGATTCAGATTCAGATAGCGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGACTCAGACAGCGATTCAGACTCA | Design primers |
587921 | GACAGCGATTCAGACTCA-GACAGCGATTCAGACTCA-GATAGTGATTCAGATTCA-GATAGTGATTCAGATTCA-GATAGTGATTCAGATTCA-GACAGCGACTCAGACTCA-GATAGTGACTCAGACTCA-GATAGCGATTCAGATTCA-GATAGCGATTCAGACTCA-GACAGCGATTCAGATTCA-GACAGCGACTCAGACTCA | Design primers |
588134 | TCGGACAGCGATTCAGACTCAGATAGCGACTCAGACTCAGACAGCGATTCAGACTCAGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACAGCGATTCAGATTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGATTCAGAC | Design primers |
588305 | GATAGCGATTCAGATTCAGACAGCGACTCAGATTCGGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGATAGCGACTCAGACGCAGATAGCGACTCAGATTCAGACAGCGATTCAGACTCAGATAGTGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGACAGTGATTCAGACTCA | Design primers |
591885 | ATCAGACAGTGATTCAGA-CTCAGACAGTGATTCAGA-CTCAGACAGCGACTCAGA-TTCAGACAGTGATTCAGA | Design primers |
591973 | GATTCAGACAGCGACTCAGACGCAGACAGCGATTCAGACGCAGACAGCGACTCA | Design primers |
592103 | CAGATAGCGACTCAGATTCAGACAGTGACTCAGACTCAGATAGCGACTCAGACTCAGACAGTGACTCAGACTCAGACAGCGATTCAGATTCAGATAGCGACTCAGATT | Design primers |
592219 | GATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGATAGCGACTCAGACTCAGACAGTGATTCAGACTCAGATAGC | Design primers |
639684 | AA-TA-AA-AA-TA-AC-TA-TA-AA-CA-TA-AA | Design primers |
682305 | AAAATTAATATTAAAAATAAAAAT | Design primers |
705220 | ATAAAGACAAAGATAAAGATAAAG | Design primers |
760030 | AAATTTTTTTAAATTTGTTCAAGTTTTTCT | Design primers |
828859 | TAGTGGTTCAGATTCAGC-GAGTGATTCAGATTCAGC-AAGTGATTCAGACTCAGC-GAGTGATTCAGATTCAGC-AAGTGATTCAGATTCAGC-AAGTGATTCAGATTCAGC-AAGTGATTCAGACTCAGC-AAGTGATTCAGATTCAGC-AAGTGATTCAGATTCAGC-AAGCGATTCAGATTCAGC-GAGCGATTCAGATTCAGC-GAGCGATTCAGATTCAGC | Design primers |
829127 | GATAGCGATTCCGACTCAGATAGCGACTCAGATTCAGACAGCGATTCTGACTCAGACAGCGATTCTGACTCA | Design primers |
829280 | TCAGATTCCGATAGCGATTCAGATTCCGACAGTGATTCCGACTCAGATAGCGAT | Design primers |
829337 | GACTCAGATAGCGACTCA-GATTCAGACAGCGATTCA-GATTCAGACAGCGATTCA-GACTCAGACAGTGACTCA-GATTCAGATAGCGATTCA | Design primers |
829428 | ATTCAGACAGTGATTCAGACTCAGATAGCGATTCAGATTCCGACAGTGACTCAGACTCAGACAGCGATTCAGATTCCGATAGCGATTCAGATTCCGACAGTGACTCAG | Design primers |
829561 | GAGTGATTCAGATTCAGATAGCGATTCAGAATCAGATAGTGACTCAGACTCAGACAGTGATTCAGATTCAGATAGTGACTCAGACTCAGACAGCGATTCAGAATCAGATAGTGACTCCGATTCAGACAGCGATTCAGAATCAGATAGTGACTCCGATTCAGA | Design primers |
856135 | AAAAGTATAAAAGTTTAAAAGAAT | Design primers |
1000128 | TCAGGGTTGTTAGGGTTGTCAGGGTTA | Design primers |
1000161 | TCATCTGGGTTGTTAGGGTTATCAGGATTGTTAGGGTTATCAGGATTGTTAGGG | Design primers |
1084704 | CTTTAACTT-CTTTAACTT-CTTTAGCTT | Design primers |
1213156 | TATAGAATTATATAATTATAGAAA | Design primers |
1322160 | TATTAAAGAATATGAAATAATAGAAAAGAA | Design primers |
1324546 | CTGCTTCTTCTTCGGCTTCTTCTT | Design primers |
1372348 | ATTTTTTGTCTTCAGACTTTTTATCATCAGATTTCTTGTCGTCTG | Design primers |
1695418 | TTCTTTTTTTATCTTTTCTATTCTT | Design primers |
1852572 | AATAATAATAGTAATCATAACAAT | Design primers |
1922484 | ACAATTTAATAAACTTTAATAGAATTTTAT | Design primers |
1978711 | ATATATACAATATACACAATATACACA | Design primers |
2025908 | TTTGGATTCGGATTTGGCTTTGGT | Design primers |
2307247 | AACTACAACGACTACAACAACTACGACAACTACATC | Design primers |
2320067 | TAATATATCAATATATTGATATAT | Design primers |
2389868 | TTTAAATTAATTTTATGTAATATAA | Design primers |
2498637 | ATCTTTATAATCTTTAAAATCTTTAAA | Design primers |
2589410 | TATTTTAAATTTTATATTTTTTATTTTT | Design primers |
2615378 | ACTTACTTTTAATTACTTTCACTTTCTTAT | Design primers |
2663050 | CTATCTGAATCCGAGTCGCTATCCGAGTCTGAGTCG-CTGTCTGAATCTGAATCGCTATCCGAGTCTGAGTCG-CTGTCTGAATCTGAATCGCTGTCTGAGTCCGAATCG-CTATCTGAATCTGAGTCG | Design primers |
2663177 | TGTCTGAGTCTGAATCGC-TATCTGAGTCTGAGTCGC-TGTCTGAGTCTGAGTCGC-TGTCTGAGTCTGAATCGC-TATCTGAATCTGAGTCGC-TGTCTGAGTCTGAGTCGC-TATCTGAGTCTGAGTCGC-TGTCTGAGTCTGAGTCGC-TGTCTGAATCTGAATCGC-TGTCTGAGTCTGAATCGC-TATCTGAGTCTGAATCGC-TATCTGAGTCTGAATCAC-TGTCTGAGTCCGAGTCAC-TGTCTGAATCTGACTCAC-TATCTGATTCTGAGTCGC-TATCTGATTCTGAGTCGC-TGTCTGAATCTGAATCAC-TGTCTGAATCCGAATCGC-TATCTGATTCTGAATCGC-TATCTGAATCTGAATCGC-TATCTGAATCTGAGTCGC-TATCTGATTCTGAATCGC-TATCTGATTCTGAGTCGC-TGTCTGAATCTGAATCAC-TGTCTGAATCCGAATCGC-TATCTGATTCTGAGTCGC | Design primers |
2688262 | GGATCTTTCGATGCATCTTTCAATGCATCTTTCGAT | Design primers |
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