Microsatellites /Tandem Repeats database

Genome: Staphylococcus aureus subsp. aureus ST228 complete genome, isolate 18583

Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
98638CTCCGTTGCCGTCTTCTTTACCAGGTTTGTTGCCGTCTTCTTTACCAGGCTTGTTGCCGTCTTCTTTACCAGDesign primers
98711CTTGTTGTTGTCTTCTTTACCAGGCTTGTTGCCGTCTTCTTTGCCAGGTTTGTTGTTGTCTTCTTTACCAGGCTTGTTGCCGTCTTCTTTACCAGGTTTTTTGTTGTCTTCTTTACCAGGCTTGTTGCCGTCTTCTTTGCCAGGTTTGTTGTTGTCTTCTTTACCAGGCTTGTTGCCGTCTTCTTTACCAGGDesign primers
212249TAATCATTTTAACCATCATTTTAATTATCATTTTAADesign primers
282977TTAGTATTATTATTTGTATTATTADesign primers
314936AAAGAAATGAAAAAAGAAGATAAGADesign primers
424480GA-TA-AA-AA-TA-AA-TA-TA-AA-GA-AA-AADesign primers
428459GG-AA-AA-TA-GC-AA-AA-TA-GA-AA-AA-TADesign primers
432189AATAATAAAAAATAATGCAACATAATAATADesign primers
443299AA-CA-TA-AG-CA-TA-AA-TA-TA-AA-GA-TADesign primers
583475GACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGTGACTCAGACTCAGATAGCGACTCAGACTCADesign primers
583553GACTCAGACAGCGACTCAGACTCAGATAGTGATTCAGATTCGGACAGCGACTCAGATTCAGACAGCGAATCAGATTCGGATAGCGACTCAGACTCAGATAGCGACTCADesign primers
583662ACAGCGACTCAGATTCAGACAGTGACTCAGACTCAGACAGCGACTCAGATTCAGACAGCGATTCAGATTCGGATAGCGACTCAGATTCAGDesign primers
583787GACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCAGACAGCGATTCAGATTCAGATAGCGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGACTCAGACAGCGATTCAGACTCADesign primers
587921GACAGCGATTCAGACTCA-GACAGCGATTCAGACTCA-GATAGTGATTCAGATTCA-GATAGTGATTCAGATTCA-GATAGTGATTCAGATTCA-GACAGCGACTCAGACTCA-GATAGTGACTCAGACTCA-GATAGCGATTCAGATTCA-GATAGCGATTCAGACTCA-GACAGCGATTCAGATTCA-GACAGCGACTCAGACTCADesign primers
588134TCGGACAGCGATTCAGACTCAGATAGCGACTCAGACTCAGACAGCGATTCAGACTCAGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACAGCGATTCAGATTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGATTCAGACDesign primers
588305GATAGCGATTCAGATTCAGACAGCGACTCAGATTCGGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGATAGCGACTCAGACGCAGATAGCGACTCAGATTCAGACAGCGATTCAGACTCAGATAGTGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGACAGTGATTCAGACTCADesign primers
591885ATCAGACAGTGATTCAGA-CTCAGACAGTGATTCAGA-CTCAGACAGCGACTCAGA-TTCAGACAGTGATTCAGADesign primers
591973GATTCAGACAGCGACTCAGACGCAGACAGCGATTCAGACGCAGACAGCGACTCADesign primers
592103CAGATAGCGACTCAGATTCAGACAGTGACTCAGACTCAGATAGCGACTCAGACTCAGACAGTGACTCAGACTCAGACAGCGATTCAGATTCAGATAGCGACTCAGATTDesign primers
592219GATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGATAGCGACTCAGACTCAGACAGTGATTCAGACTCAGATAGCDesign primers
639684AA-TA-AA-AA-TA-AC-TA-TA-AA-CA-TA-AADesign primers
682305AAAATTAATATTAAAAATAAAAATDesign primers
705220ATAAAGACAAAGATAAAGATAAAGDesign primers
760030AAATTTTTTTAAATTTGTTCAAGTTTTTCTDesign primers
828859TAGTGGTTCAGATTCAGC-GAGTGATTCAGATTCAGC-AAGTGATTCAGACTCAGC-GAGTGATTCAGATTCAGC-AAGTGATTCAGATTCAGC-AAGTGATTCAGATTCAGC-AAGTGATTCAGACTCAGC-AAGTGATTCAGATTCAGC-AAGTGATTCAGATTCAGC-AAGCGATTCAGATTCAGC-GAGCGATTCAGATTCAGC-GAGCGATTCAGATTCAGCDesign primers
829127GATAGCGATTCCGACTCAGATAGCGACTCAGATTCAGACAGCGATTCTGACTCAGACAGCGATTCTGACTCADesign primers
829280TCAGATTCCGATAGCGATTCAGATTCCGACAGTGATTCCGACTCAGATAGCGATDesign primers
829337GACTCAGATAGCGACTCA-GATTCAGACAGCGATTCA-GATTCAGACAGCGATTCA-GACTCAGACAGTGACTCA-GATTCAGATAGCGATTCADesign primers
829428ATTCAGACAGTGATTCAGACTCAGATAGCGATTCAGATTCCGACAGTGACTCAGACTCAGACAGCGATTCAGATTCCGATAGCGATTCAGATTCCGACAGTGACTCAGDesign primers
829561GAGTGATTCAGATTCAGATAGCGATTCAGAATCAGATAGTGACTCAGACTCAGACAGTGATTCAGATTCAGATAGTGACTCAGACTCAGACAGCGATTCAGAATCAGATAGTGACTCCGATTCAGACAGCGATTCAGAATCAGATAGTGACTCCGATTCAGADesign primers
856135AAAAGTATAAAAGTTTAAAAGAATDesign primers
1000128TCAGGGTTGTTAGGGTTGTCAGGGTTADesign primers
1000161TCATCTGGGTTGTTAGGGTTATCAGGATTGTTAGGGTTATCAGGATTGTTAGGGDesign primers
1084704CTTTAACTT-CTTTAACTT-CTTTAGCTTDesign primers
1213156TATAGAATTATATAATTATAGAAADesign primers
1322160TATTAAAGAATATGAAATAATAGAAAAGAADesign primers
1324546CTGCTTCTTCTTCGGCTTCTTCTTDesign primers
1372348ATTTTTTGTCTTCAGACTTTTTATCATCAGATTTCTTGTCGTCTGDesign primers
1695418TTCTTTTTTTATCTTTTCTATTCTTDesign primers
1852572AATAATAATAGTAATCATAACAATDesign primers
1922484ACAATTTAATAAACTTTAATAGAATTTTATDesign primers
1978711ATATATACAATATACACAATATACACADesign primers
2025908TTTGGATTCGGATTTGGCTTTGGTDesign primers
2307247AACTACAACGACTACAACAACTACGACAACTACATCDesign primers
2320067TAATATATCAATATATTGATATATDesign primers
2389868TTTAAATTAATTTTATGTAATATAADesign primers
2498637ATCTTTATAATCTTTAAAATCTTTAAADesign primers
2589410TATTTTAAATTTTATATTTTTTATTTTTDesign primers
2615378ACTTACTTTTAATTACTTTCACTTTCTTATDesign primers
2663050CTATCTGAATCCGAGTCGCTATCCGAGTCTGAGTCG-CTGTCTGAATCTGAATCGCTATCCGAGTCTGAGTCG-CTGTCTGAATCTGAATCGCTGTCTGAGTCCGAATCG-CTATCTGAATCTGAGTCGDesign primers
2663177TGTCTGAGTCTGAATCGC-TATCTGAGTCTGAGTCGC-TGTCTGAGTCTGAGTCGC-TGTCTGAGTCTGAATCGC-TATCTGAATCTGAGTCGC-TGTCTGAGTCTGAGTCGC-TATCTGAGTCTGAGTCGC-TGTCTGAGTCTGAGTCGC-TGTCTGAATCTGAATCGC-TGTCTGAGTCTGAATCGC-TATCTGAGTCTGAATCGC-TATCTGAGTCTGAATCAC-TGTCTGAGTCCGAGTCAC-TGTCTGAATCTGACTCAC-TATCTGATTCTGAGTCGC-TATCTGATTCTGAGTCGC-TGTCTGAATCTGAATCAC-TGTCTGAATCCGAATCGC-TATCTGATTCTGAATCGC-TATCTGAATCTGAATCGC-TATCTGAATCTGAGTCGC-TATCTGATTCTGAATCGC-TATCTGATTCTGAGTCGC-TGTCTGAATCTGAATCAC-TGTCTGAATCCGAATCGC-TATCTGATTCTGAGTCGCDesign primers
2688262GGATCTTTCGATGCATCTTTCAATGCATCTTTCGATDesign primers

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