Microsatellites /Tandem Repeats database

Genome: Mycobacterium canettii CIPT 140070017

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
90156GGCCACAATCGGGCCACAATCCGGCCACAAGCGCGCCACAATCGDesign primers
126016GTGACATAGG-TTGACATAGG-TTGACATAGGDesign primers
242798GCCGTCGCAAA-CCCGTCGCAAA-CCCGTCGCAAADesign primers
320231TCGGCCTCGAAA-CCGGCCTCGAAA-CCGGCCTCGAAADesign primers
337421CGCCGCCGG-CGCCGCCGG-CGCCGCCGGDesign primers
338867ACGACCACGATC-ATGACCACGATC-ATGACCACGATC-ATGACCACGATCDesign primers
368953ACCGGTGTTGAAGCTGCCGGTGTTGAAGCTACCGGTGTTGAAGCTDesign primers
426258TCCCGCCGT-TCCCGCCGT-TCCCGCCGTDesign primers
432969ATTGCCGAGGTTTGCACTGCCGAGGTTTGCACTGCCGAGGTTTGCDesign primers
436800GCTGCCGGTGTTGCCGATGCCGGTGTTGCCGCTGCCGGAGTTGCCDesign primers
539337GTTGCCGCTGCCGGTGTTGCCGCTGCCGATGTTGCCGCTGCCGGTDesign primers
573956CCAAGAAGGCTGCTCCGGCCAAGAAGGCCGCTCCGGCCAAGAAGGCCGCTCCGGDesign primers
629440CGGCGGCAA-CGGCGGCAA-CGGCGGCAADesign primers
637042CCTAGCGAGGGT-TCTAGCGAGGGT-TCTAGCGAGGGT-TCTAGCGAGGGT-TCTAGCGAGGGTDesign primers
638987CGGGGCCGG-CGGGGCCGG-CGGGGCCGGDesign primers
647125CACCGACGACCGTCGCCCCGACGACCGTCGCCCCGACGACCGTCGDesign primers
872155CGGCAACGG-CGGCAACGG-CGGCAACGGDesign primers
873926CC-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NNDesign primers
875182CGGCGGGGC-CGGCGGGGC-CGGCGGGGCDesign primers
875404CGGGGCCGG-CGGGGCCGG-CGGGGCCGGDesign primers
876121CGGCAACGG-CGGCAACGG-CGGCAACGGDesign primers
1142533AC-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NNDesign primers
1175571GGGATGCCGATGCCCGGGATGCCGACGCCCGGGATGCCGACGCCCDesign primers
1243961GCCGCCGTT-GCCGCCGTT-GCCGCCGTTDesign primers
1244022TTGCCGCCG-TTGCCGCCG-TTGCCGCCGDesign primers
1247479CGGTGCCGC-CGGTGCCGC-CGGTGCCGCDesign primers
1247883CCGGCCCCG-CCGGCCCCG-CCGGCCCCGDesign primers
1268816GCCGGCGGG-GCCGGCGGG-GCCGGCGGGDesign primers
1268956CGGCGGCGC-CGGCGGCGC-CGGCGGCGCDesign primers
1551665CCGCCGGTG-CCGCCGGTG-CCGCCGGTGDesign primers
1551925CCCGCCGGC-CCCGCCGGC-CCCGCCGGCDesign primers
1634265GCCGGGCTG-GCCGGGCTG-GCCGGGCTGDesign primers
1634832GCCGCCGGC-GCCGCCGGC-GCCGCCGGCDesign primers
1662475ATAGCTGGCCTATAGCTGCCCTATAGCTGGCCTDesign primers
1674031CGGTACCGGTCCGCCCGGTATCGGTACCGGTCCGCCGGGGATTGGTACCGGTGCGCCCGGTATDesign primers
1679816CGCCGTTGC-CGCCGTTGC-CGCCGTTGCDesign primers
1692418GCCGCCGTT-GCCGCCGTT-GCCGCCGTTDesign primers
1692603CGCCGTTGC-CGCCGTTGC-CGCCGTTGCDesign primers
1693245CGCCGTCGC-CGCCGTCGC-CGCCGTCGCDesign primers
1695354CGCCGGCCC-CGCCGGCCC-CGCCGGCCCDesign primers
1699716GCCGCCGTT-GCCGCCGTT-GCCGCCGTTDesign primers
1794321GA-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NNDesign primers
2058414CT-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NNDesign primers
2072590GGCGCCGCC-GGCGCCGCC-GGCGCCGCCDesign primers
2073001CCCGCCGGC-CCCGCCGGC-CCCGCCGGCDesign primers
2073781CGCCCCACC-CGCCCCACC-CGCCCCACCDesign primers
2166302CCGCCGTTG-CCGCCGTTG-CCGCCGTTGDesign primers
2166773CCGCCGTTG-CCGCCGTTG-CCGCCGTTGDesign primers
2223425ACTGCGGCCCATCGAG-ACTCCGGCCCATCGAG-ACTCCGGCCCATCGAG-ACTCCGGCCCATCGAGDesign primers
2627466ACGTGGTCGCCGGCGGCT-GCGTGGTCGCCGGCGGCT-GCGTGGTCGCCGGCGGCTDesign primers
2799300GGCGGGGCC-GGCGGGGCC-GGCGGGGCCDesign primers
2799624GCCGGCGGG-GCCGGCGGG-GCCGGCGGGDesign primers
2909898CACCGTTGC-CACCGTTGC-CACCGTTGCDesign primers
3144651CGGCGCCGG-CGGCGCCGG-CGGCGCCGGDesign primers
3480792CC-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NNDesign primers
3677872ACGCTTGTCGGCGCTTGTCGACGCTTGTCGDesign primers
3863107CCGCCGGTG-CCGCCGGTG-CCGCCGGTGDesign primers
3863489CGCCGGTGC-CGCCGGTGC-CGCCGGTGCDesign primers
3864669GT-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NNDesign primers
4032460CCGGCGGCA-CCGGCGGCA-CCGGCGGCA-CCGGCGGCADesign primers
4032892CCGGCGGGG-CCGGCGGGG-CCGGCGGGG-CCGGCGGGGDesign primers
4032966AACGGCGGC-AACGGCGGC-AACGGCGGC-AACGGCGGCDesign primers
4034019GGCAACGGC-GGCAACGGC-GGCAACGGCDesign primers
4037291GC-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NNDesign primers
4038392GA-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NNDesign primers
4039699CGGCGGCAC-CGGCGGCAC-CGGCGGCACDesign primers
4044688CGGCGGGAC-CGGCGGGAC-CGGCGGGACDesign primers
4050529CA-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NNDesign primers
4052009CCGGCGGCA-CCGGCGGCA-CCGGCGGCADesign primers
4149338GCCGCCCGC-GCCGCCCGC-GCCGCCCGCDesign primers
4202879GCCGGCGGG-GCCGGCGGG-GCCGGCGGGDesign primers
4203463CGGCAACGG-CGGCAACGG-CGGCAACGG-CGGCAACGGDesign primers
4206839GCCGGCGGG-GCCGGCGGG-GCCGGCGGGDesign primers
4207423CGGCAACGG-CGGCAACGG-CGGCAACGG-CGGCAACGGDesign primers
4210870CC-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NNDesign primers
4212326GGCGGGGCC-GGCGGGGCC-GGCGGGGCCDesign primers
4212799CGGCGCCGG-CGGCGCCGG-CGGCGCCGGDesign primers
4212889CGGCGCCGG-CGGCGCCGG-CGGCGCCGGDesign primers
4212994CGGCGGCGC-CGGCGGCGC-CGGCGGCGCDesign primers
4278215ACCCGGCAT-ACCCGGCAT-ACCCGGCATDesign primers
4472912GGGGTTCCTGGCGTGATC-GGGGTTCCCGGCGTGATC-GGGGTTCCCGGCGTGATC-GGGGTTCCCGGCGTGATC-GGGGTTCCCGGCGTGATCDesign primers
4473003GGGTTCCCGGCGTGACCGGGATTCCCGGCGTGACCGGGATTCCCGGCGTGACCGDesign primers
4478658ATTCATTGAGATTCATTGCGATTCATTGAGDesign primers

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