Microsatellites /Tandem Repeats database

Genome: Helicobacter pylori ELS37

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
7707CATGCCGCCCATGCCTCCCATTCCGCCCATGCCACCDesign primers
79953TA-TA-TA-TA-TA-TT-TT-TA-TA-TA-TA-AADesign primers
82966TATGGTATGTATGGCATGTATGGAATGDesign primers
83934TAACACGGATACCGGCAACACAGACACCGGCAATACGGATACCGGDesign primers
84037GACGACATGAGCAACGACATGGGCGATGACATGAACDesign primers
84169ATGGGGGATATGGGCGATATGGGGAATDesign primers
92207TTCTTCGTTTTCTTCGTCTTCTTCGCTDesign primers
97447TTTTTTTTATTATTTTTATTATTTTDesign primers
126452GCTTGTCTTTTGTTTTTCTTG-TTCTGTCTTTTGTTTTTCTTG-TTCTGTCTTTTGTTGTTCTTGDesign primers
126548GCTTGTCTTTTGTTTTTCTTG-TTCTGTCTTTTGTTTTTCTTG-TTCTGTCTTTTGTTGTTCTTGDesign primers
128093TGCTTTTTGTCTTTCTTGTTCTGTTTTCTGTTGTTCTTGTTCTGTCTTTTGTTTTTCTTGTTCDesign primers
136287GAGAAAAAAGGGAAAAAAGGGAAAAAADesign primers
166639GCCTTTGAGCCTTTTAGCCTTTCADesign primers
173278ATTCTTTAACCTCTTCTTTAGCCTCTTCTTTAGCCTDesign primers
202352CAAAAAGAAGAGCAAAAAAATGAGCAAGAAGAAGAGDesign primers
235744GTATAAAGGTATAAAAATATAAAGDesign primers
260745TCTATTGATGATTTGAGGGTT-AATTATGATGATTTGAGGGTT-AATTATGATGATTTGAGGGTT-AATTATGATGATTTGAGGGTTDesign primers
269050TCAAGGGCTTAGACAAGGACTTAGGCAAGGACTTAGDesign primers
301365AAGAAAAAGAAAAAAAAGCAGAAAAAGDesign primers
310732CGTTGCTT-GGTTGCTT-GGTTGCTT-GGTTGCTTDesign primers
310772GATTGAAT-GAATGATA-GAATGATA-GAATGATA-GAATGATA-GAATGATADesign primers
310826TAGAATGA-TTGATTGC-TTGAATGG-TTGAATGG-TTGAATGG-TTGAATGG-TTGAATGG-TTGAATGG-TTGAATGG-TTGAATGG-TTGAATGG-TTGAATGGDesign primers
327088AAAATAAACTAAACTAAAAATAAATDesign primers
405946TGGGGGGCGTGAGGGCTTTGGGGAGTGTGAGGGTTTTGGGGAGTGCGAGGGCTTDesign primers
412515CCTTAAGAAAATGAATTTCAAATGAAGAAAACGAATTTCAAATGAAGAAAATGAGTTTCADesign primers
415034CTTTTTTCTTTTAAACCCTTTTCTTTTGAACTTTCTTTTTTTAAADesign primers
415448ATTCTTTTAAACTTTTTTAAATTTTTTTACDesign primers
436724AAAAAATAAAAAAAAAAAACAAAATDesign primers
482959TTCTATATTTATTTGAACAATATTTATTTGAACAATATTTATTTGDesign primers
665149TTTTGAGCTTCATTTTTTTGAGTCTCACTTTTTTGAGCCTCTTTTDesign primers
669040TGATGATTTGAGGGTTAATTA-TGATGATTTGAGGGTTAATTA-TGATGATTTGAGAGCCGATTADesign primers
669104AATAATTTGAGAGCCGATTAT-AATAATTTGAGAGCCGATTAT-AATAATTTGAGAGCCGATTAT-AATAATTTGAGAGCCGATTAT-AATAATTTGAGAGCCGATTACDesign primers
683096TATTACATGCCTTATTATTACATGCCCTATGGTTTCATGCCTTATDesign primers
685925CAAAGCGCTTCAAACCACTTAAAAGCGCTCDesign primers
699386AAAGCGTGCAAAAAATCGCGCAAAAAATCGCGCAAADesign primers
702218GAGATTTTTGGTGAGATCATCGTATTTTTTGGTGAGTTCATCGTATTTTTTGGTGAGTTCATCDesign primers
752062GTAGAGCAGAAAGTAGAACAAAAAGTAGAGCAGAAADesign primers
794814TTTTTCTTTCTTTTCTTTCTTTTCTTTDesign primers
867392TCA-TCT-TCA-TAT-TCT-TCT-TCA-TCTDesign primers
976461TTTTCACTTTCATTTTCTGTTTCADesign primers
986539CAATGAAGAAGTTTCCAATGAAGAAGCCTTAAATAAAGAAGCTTCDesign primers
999640AATTGCAAGAAATTGTAAAAAATTGCCAGTDesign primers
1015666ACAACAAAACACAAAACCACAAAACDesign primers
1033559CCCTGATTATTT-TATTGATTATTT-TATTGACTATTT-TATTGATTATTT-TATTGATTATTT-TTTTGATTATTTDesign primers
1045886CTAAAGAAGAAGCGCAAGAAGAAGTTAAAGAAGAAADesign primers
1059878CATCGCCTCCATCGCCCCCATCGCCCCDesign primers
1090162GATATTAGGGATATTGGGGATATTGGGDesign primers
1117031TTTCCTTTTCTTTTTGCTTTTCCTDesign primers
1163341CAAAGAGCATGCAAAAAAAGAACATGCAAAAGAAAAGCATGCAAADesign primers
1193794GGTTGGGATTGGTGGGGTTTGGTTGGGTTTDesign primers
1246273AAAGATTAAATGAATATTAAATGAAGATTAAATDesign primers
1254351GTATTTAATGAAATCTTTCTGTTCTTTAACCAAATCTTTCTGTTCTTTAACCAAATCTTTCTGTTCTTTAACCAAATCTTTCTGTTCTTTAATCAAATCTTTTTGDesign primers
1306119TAACCCATATCACCCATATAAGCCATADesign primers
1314000GG-TT-TA-AA-AA-GA-GA-GT-TT-AA-AA-AA-GA-GA-GT-TT-AA-AA-AA-GA-GADesign primers
1316452TACATTGGAATGTATTTGCATTAGAATGCATTTGCATTGGAATGTATTDesign primers
1327003TGGCATGCCGATTAA-ATGCATGCTGATTAA-ATGCATGCTGATTAA-ATGCATGCTGATTAADesign primers
1359545TAGAGAGCCTCAAACTAGAGAGCCTCAGACTAGAGAACCACAAGCDesign primers
1377432AGTTATTA-TGTATTTA-TGTATTTA-TGTATTTA-TGTATTTA-TGTATTTA-TGTATTTA-TGTATTTADesign primers
1379374TTATCTTTATCGCTATCTTTTTCTDesign primers
1441984TATGGATTATAGGCTGTTTCAATTATAGGCTGTTTCAATTATAGGCTGDesign primers
1453944ATGGCATT-CAACCATT-CAACCATT-CAACCATT-CAACCATT-CAACCATT-CAACCATT-CAACCATT-CAACCATT-CAACCATT-CAACCATT-CAACCATTDesign primers
1454050AGCAATCA-ATCATTCT-ATCATTCT-ATCATTCT-ATCATTCT-ATCATTCTDesign primers
1454123TCAACCAA-GCAACCAA-GCAACCAA-GCAACCAADesign primers
1472280TTG-TTG-GTT-TTG-TTG-TTG-TGC-TTT-TTG-TTG-TTG-TTG-CTG-TTG-TTGDesign primers
1482848AAGCTA-AGTCTA-AGTCTA-AGTCTA-AGTCTA-AGTCTA-AGTCTA-AGTCTADesign primers
1496402AAAACCCAAACCTAAACCAAAACCDesign primers
1573733TTAATTT-TCAATTT-TCAATTT-TCAATTTDesign primers
1575043GCATTTCAATGTATTTTAATGCATTTAAATDesign primers
1615248ACAA-AAAA-GAAA-GCAA-GAAA-GAAA-GCAA-GAAA-GAAADesign primers
1644634TATCGTTTTATCTTTTTATCATTTDesign primers
1663112TTTTTAG-TGATTAG-TGATTAG-TGATTAG-TGATTAG-TGATTAGDesign primers
1664479AGTGAAG-TGATTAG-TGATTAG-TGATGAG-TGATTAG-TGATTAG-TGATTAG-TGATTAG-TGATTAG-TGATTAG-TGATTAG-TGATTAGDesign primers

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