Microsatellites /Tandem Repeats database

Genome: Melissococcus plutonius ATCC 35311

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
15871CTATTT-TTATTT-TTATTT-TTATTTDesign primers
37972AACAAAGAAATAAAGAAACAAAAADesign primers
48004ATAAAGAAAAAAATACAGCAAAAAATGAACAAAAAADesign primers
55687ATTTTTTGATATTTTGAATTTTTGDesign primers
83046AAAATAAGT-AAAATAAGT-AAAATAAATDesign primers
198774ATAAACCGAACAAACCAAATGAACCTAATAAACCAAACAAACCAACCAAACCAADesign primers
253936ATAGTTATTTAGTTATATACTTATDesign primers
308085TTATTTAAAATTAAGTAAAATTTTTTCAAADesign primers
361360AATAAAAATATAAATTAAAATAGADesign primers
418556CCTATG-CCTATG-CATATG-CCAATGDesign primers
435176AA-AA-AT-AA-AG-AT-AA-AA-AT-AA-AA-AADesign primers
453367TATTATCATTATTAGTATTATTAGDesign primers
492612GGCCCGGTCATGGTGGACAGGTCATGGTGGACAGGTCATGGTDesign primers
517891TAAGTATTG-GAAGTATTG-GAAGTATTGDesign primers
600000GATTTTGCTTTTGCTTTTGATGTTDesign primers
645232GAATTAATGATTTAATGATTTAATGAATTAAADesign primers
681463TTTTTCTTGTTCTTCTTCTTTTTTCTTTTCTTCTTCDesign primers
723591TCAAAAAAATGCAAAAAACTTTTAAAAAATDesign primers
786785CAATGACAATTACAATGTTAATGADesign primers
794538TAGTGGTAGAAAGTGGTGGATTATGGTAGADesign primers
940568AAATAAAAAACAAAATATAAAAAATGAADesign primers
963547AAAAAATGATTGAAAATGATAAAAAAGAATDesign primers
971562TAATAATAATTATAATTAAAATAADesign primers
1035727TTTAATTGTTAATTTTTAAATTTTGATTDesign primers
1107226GAA-GAA-AAA-GAA-AAA-GAA-GAA-GAA-AAA-GAADesign primers
1115826TT-TT-TT-TC-TT-TT-TT-TC-TT-TG-TT-TTDesign primers
1176530AAAAAATAAAAAAGAAACAATAAAADesign primers
1204459TT-AA-AT-TT-TA-AT-TT-AT-AT-TT-AT-ATDesign primers
1258089TCTTTTGTTTTTTTTTATTTTATTTDesign primers
1259430GGCAATGTTGGTAATGTTGGTAATGTTDesign primers
1320853AAAAAAAATAAACAAAGAAAAAAATDesign primers
1347081ATTATTTTTTAATAATTTTTAATTTATTTTTTGDesign primers
1373516TGTTTTGTTATCTTTTGTGTTGTTCDesign primers
1376110TTTTATTCACTTGAATTCACTTGAATTCACDesign primers
1465473TTTTATTGTATTCTATTTTTTTCTADesign primers
1497186TCTATA-TCTATA-TCTTTA-TCTATA-TCTTTA-TCTTTA-TCTATADesign primers
1497235CTGTTGCGTGA-CTGTCCCGTGA-CTGTCCCGTGA-CTGTCCCGTGA-CTGTCCCGTGADesign primers
1507650CTTTATTA-ATTTATTA-ATTTATTADesign primers
1558235AATAACAATATTAACAATATTAACAATDesign primers
1563003GATTTTTCAAAATTTTTGAAAATTTTTGAADesign primers
1564327TTCTT-TTATT-ATCTT-TTCTT-TTCTTDesign primers
1675518TA-AA-AA-TA-TA-AA-AA-AA-TA-AA-AA-TADesign primers
1682806AAAAAATAAATAAACACTAAATAATAAATAAATDesign primers
1716263GTCTGGATTAGGCTTTGGATTAGGCTTTGGATTAGGDesign primers
1729374CAATAACAAAAACAGTAAAAATAADesign primers
1736764TCTTTA-TCTTTA-TTTTTA-TCTTTADesign primers
1817344CTTCTGCTGCTGCTGGACCTGCTGCTGCTGCAACTGGTGCTGCTGDesign primers

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