Microsatellites /Tandem Repeats database

Genome: Cellulophaga algicola DSM 14237

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
35261TTTATTAAGTATTTGTTAACTATTTGTTAACTADesign primers
175188CATGTTTTTTAATGTTTTCTGATATTTTTTDesign primers
294812TGATGAAGATGATGATAATGATGGDesign primers
304408TGATTTTGAGTTTGGTTTTGATCTDesign primers
337157TTCTTCCTTTGCTTCTTCTTTTACTTCTTCTTTTGCDesign primers
509511AAAAATAAATAAAAATGAAAAAATTTAAATDesign primers
572405AAAA-CCGC-CAAC-CAAC-CAAC-CAAC-CAAC-CAAC-CAAC-CAAC-CAAT-CAAC-CAAC-CAAC-CAACDesign primers
579329AATCCAAATCAGAATAACCCCAATCAAAATAATCCGAATCAAAACDesign primers
658732AATAAAAATGATAAAAATCATAAAAATDesign primers
681977TTGGTTG-ATGGTTG-ATGGTTG-ATGGTTG-ATGGTTGDesign primers
748841TTTG-ATTG-ATTG-ATTG-ATTG-ATTGDesign primers
750697TTTT-TGAT-TGAT-TGAT-TGAT-TGAT-TGAT-TGAT-TGATDesign primers
751337TTTG-ATTG-ATTG-ATTG-ATTG-ATTGDesign primers
756149CTAAAAACTTA-AAAAAAACTTA-AAAAAAACTTADesign primers
757668ACCACCACGACCACCATCTCCACCDesign primers
822288TCTTCTTTGTTCTTTTTTGATTTTCGTTGTDesign primers
898921TCATTTTGTTTGATTTTGATTGATTTTGATDesign primers
1235073CTGCTGCTGCTATTGCTGCTGCAGDesign primers
1270270TAAGTTG-GTTGATG-GTTGATG-GTTGATG-GTTGATG-GTTGATG-GTTGATG-GTTGATG-GTTGATGDesign primers
1302493TATTTTAAAATATTTTAATGTTTTTGAAAADesign primers
1305619TATTTTATTATCTTTTATTTTATTTDesign primers
1344637CGAAGAGAT-AGAAGAGAT-AGAAGAGATDesign primers
1490478GATGCTGATGGTGATGGTGTTGCTDesign primers
1593271TTT-TCT-TCC-TCT-TCT-TCA-TCC-TCT-TCT-TCT-TCC-TCTDesign primers
1641651CTTCTTCTTCCTCTGCTTCTTTTTDesign primers
1664620AAAAAAAGAAAAAACAAAACAATAADesign primers
1699127AGTTGCAGTTCCTGTTGCAGTTCCDesign primers
1729303TG-TT-TT-AG-TT-TT-TC-TT-TT-TG-TT-TTDesign primers
1896671ATTTA-ATTTC-TTTTA-TTTTA-ATTTCDesign primers
2017555TTTTGTTATTGTGTTTGTTTTGGTDesign primers
2197217AGCTTTAGCTCTAGCTTCTGCTTTCGCTTTDesign primers
2221027AAATTAC-CATCAAC-CATCAAC-CATCAAC-CATCAAC-CATCAAC-CATCAAC-CATCAAC-CATCAAC-CATCAAC-CATCAAC-CATCAAC-CATCAAC-CATCAAC-CATCAAC-CATCAAC-CATCAAC-CATCAACDesign primers
2381604CACCACCACCTCCACCACCACCAGDesign primers
2381712CTGAAGTTG-CTGAAGTTG-CTGAAATTGDesign primers
2521591AATGTGGTAAATAGTGGTAAATTGTGGTAADesign primers
2728443AAAGGAGAT-CAAGGAGAT-CAAGGAGAT-CAAGGAGATDesign primers
3062495AAATAG-AAATAG-AAGTAG-TAATAG-AAATAGDesign primers
3283022ATT-CTT-CTT-CTT-CTT-CTT-CTT-CTTDesign primers
3291942AACTTAC-CATCAAC-CATCAAC-CATCAAC-CATCAAC-CATCAAC-CATCAAC-CATCAAC-CATCAAC-CATCAAC-CATCAAC-CATCAAC-CATCAAC-CATCAAC-CATCAACDesign primers
3374138AATTAAAATTATAATAAAAATGAADesign primers
3392424ATA-TTA-TTA-TTA-TTA-TTA-TTA-TTADesign primers
3472140TCATTTTATAATTTTATAATTTTADesign primers
3602486AGTTGCAGAAGAAGTTACTGAAGAACTTGTAGAAGADesign primers
3644796TGA-TTA-TTA-TTA-TTA-TTA-TTA-TTA-TTA-TTADesign primers
3660955AAGTTTTTTTCATTTTTTTTAAATTCTTTTDesign primers
3689837AAATTAC-CATCAAC-CATCAAC-CATCAAC-CATCAAC-CATCAAC-CATCAAC-CATCAAC-CATCAACDesign primers
3773961TTTTATTTTAATTTTTACTTTTCTDesign primers
3862321ATA-TTA-TTA-TTA-TTA-TTA-TTA-TTADesign primers
3872043ATTTTTAAATAGTTTTAAAAATTTTTCTATDesign primers
3885255AACTTAC-CATCAAC-CATCAAC-CATCAAC-CATCAAC-CATCAAC-CATCAAC-CATCAAC-CATCAAC-CATCAAC-CATCAAC-CATCAACDesign primers
3917421TTTTTTCTTTTTTTCTTTTTTTTCTTTTTTDesign primers
3986686AGGAACAGCAACAGGATCAGGATCDesign primers
4128780AGAGTCACAGCT-AGAGTTACAGCA-GGAGTTACAGCA-GGAGTTACAGCA-GGAGTTACAGCA-GGAGTTACAGCADesign primers
4206952TTTTTATTCTTATTATTAGTTTTADesign primers
4310342CAA-TAA-TAA-TAA-TAA-TAA-TAA-TAADesign primers
4321249TAATTTCATTAAATTTATTTAAATTDesign primers
4406863ACT-AGC-AGA-AGA-AGA-ATA-AGA-AGA-AGA-AGA-AGA-AGA-AGA-AGA-AGADesign primers
4593184AAA-ATA-GTA-GTA-GTA-GTA-GTA-GTA-GTA-GTA-GTA-GTA-GTA-GTA-GTADesign primers
4784187TAATTTAACCTTTTTTTAACCTTTTTTTAACCTDesign primers
4797947GCATTTAAAAGAATTAAAAATCATTTAAATDesign primers
4807943TTTTTCTTCTTCTTTTTCTTTTCCDesign primers

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