Microsatellites /Tandem Repeats database

Genome: Mycobacterium sp. Spyr1

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
246607GGTGCC-GGTGCC-GGTGCC-GGTGCCDesign primers
520418GTCGTCGTG-GTCGTCGTG-GTCGTCGTGDesign primers
529106ACGCCC-ACGCCC-ACGCCC-ACGCCC-ACGCCCDesign primers
529137CGCCGACCCCGACACCCA-CGCCGACCCCGACACCCA-CGCCGACCCCGACACCCADesign primers
572028GGCTAACCAC-GGCTAACCAC-GGCTAACCACDesign primers
1247264GAGTCGTCG-GAGTCGTCG-GAGTCGTCGDesign primers
1342421GCGGCGGGCCGCCGATCAGACCGA-GCGGCGGGCCGCCGATCAGACCGA-GCGGCGGGCCGCCGATCAGACCGA-GCGGCGGGCCGCCGATCAGACCGADesign primers
1345586GCCGACGAC-GCCGACGAC-GCCGACGACDesign primers
2199530CCCCGT-CCCCGT-CCCCGT-CCCCGTDesign primers
2255652GAAGACGCCGCCTCG-GAAGACGCCGCCTCG-GAAGACGCCGCCTCGDesign primers
2262755GAGTCC-GAGTCC-GAGTCC-GAGTCC-GAGTCCDesign primers
2392280CCCGCA-CCCGCA-CCCGCA-CCCGCA-CCCGCADesign primers
2554494GTTGACGACGTCGCCTA-GTTGACGACGTCGCCTA-GTTGACGACGTCGCCTADesign primers
2862522GCCGACCGT-GCCGACCGT-GCCGACCGTDesign primers
3239340GCGGAGCTT-GCGGAGCTT-GCGGAGCTTDesign primers
3673731AAAAAGAACGCCTCGTTG-AAAAAGAACGCCTCGTTG-AAAAAGAACGCCTCGTTGDesign primers
3858010CGTCGAACCAGAC-CGTCGAACCAGAC-CGTCGAACCAGAC-CGTCGAACCAGACDesign primers
3931538CAGCGG-CAGCGG-CAGCGG-CAGCGGDesign primers
4389213CGTCGC-CGTCGC-CGTCGC-CGTCGCDesign primers
4498108CACGAC-CACGAC-CACGAC-CACGAC-CACGACDesign primers
4506696GAGCACACCGAAACCACC-GAGCACACCGAAACCACC-GAGCACACCGAAACCACCDesign primers
4663163CCGGCCTCG-CCGGCCTCG-CCGGCCTCGDesign primers
4664701GGCCGCACC-GGCCGCACC-GGCCGCACCDesign primers
4777971CATCGG-CATCGG-CATCGG-CATCGGDesign primers
4997250AGCCGCTCC-AGCCGCTCC-AGCCGCTCCDesign primers
5183237CGCCGACGG-CGCCGACGG-CGCCGACGGDesign primers
5305974GTTTGTTGGTTCACGCC-GTTTGTTGGTTCACGCC-GTTTGTTGGTTCACGCCDesign primers
5373343GCGGGCGCGGGCCGA-GCGGGCGCGGGCCGA-GCGGGCGCGGGCCGADesign primers
5507745TCGGTG-TCGGTG-TCGGTG-TCGGTGDesign primers

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